RchiOBHm_Chr3g0483411

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
29649035 .. 29655070
6036 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44816

Sequence Viewer

Length: 1551 bp
ATGGAAAGCTACTTGCACAAGGACTTCGACGTCCAGCACAAGCACCTCTCGCCGGAGGCCTCAAGCAATTGGAGAAAAGCCGTCAGCCGCGTCGTCAAGAACCCCGCCAGGAGGTTCCGACATCTCGCCGATCTTGACAAGCGTGCCGAGGCTGAGAGGAAGAAGAAGCAAATCCAGCAAGAAATTGAAATTCGAGTTGCTCTTTATGTTCACAAAGCGGCACTAGCATTCATTGAGGCTGGAGAGAGTCAACCAGTTTCTGATCAGGTTGAATACAAACTGTCTGAAGAGGCCGAAAAAGAGGGTTTCAGCATTCACCCAGACGAACTTGCATCAATCATACGCAGCCATGATATTAAGGCCTTGAAAAGCCACGGTGGAGTTGATGGGATTTCAACAAAAGTATCCGTCGTCCCAGATGAAGGTGTCAGGGGTAGCAGTATACCTACAAGGCAAAATGTTTATGGCTTAAACCGCTATATGGAGAAACCTCCCCGATCATTCTTGGTGTTTGTCTGGGAAGCTCTACAGGATTTAACATTAATTATTCTTATGGTTTGTGCCGTGGTTTCAATTGAAGTGGGACTTGCTACTGAAGGGTGGCCAGAAGGCATGTATGAAGGGGTGGGAATTTTACTCAGTATAGTGTTAGTTGTTTTGGTCACTGCCATTAGTGATTACAGGCAGTCCATGCAATTCAAGGATTTGGACAGGGAGAAGAAAAAGATTTTTATTCAGGTCACTAGGGATGGGAAAAGACAAAAAGTTTCCATTTATGATTTGCTGGTGGGAGATATTGTTCATTTGGCATTGGGTGACCAAGTTCCAGCGGATGGACTTTTCATATCAGGATGCAGCTTGTTGATTGATGAGTCAAGCTTGTCAGGTGAGAGTGAGCCAGTGAATGTGTGTGAAGAAAAGCCTTTTCTTCTTTCGGGAACCAAAGTGCAAGATGGGTCAGGTAAAATGCTGGTAACAACAGTTGGTATGAGGACCGAATGGGGAAAGTTGATGGAAACTCTGAGTGAGGGAGGAGAAGATGAGACCCCACTGCAGGTGAAGCTGAATGGTGTTGCTACAATTATTGGTAAAATTGGTTTGGCTTTCGCTGTGGTGACATTTTTGGTTTTGACAGTAGGATATTTGGTGGAAAAAGCACTTAGCAATGAGATCACAGATTGGTCTTCAACTGATGCCGTAATACTTTTGAACTACTTTGCCGCCATTGCAGTAACTATCTTTGTGGTGTTGGCAACTTTTGTGGTTACAGTAAGGGTTGGGGATAACATTGTTTTTGCCTTCTCCATGATGACATTTTTGGTGAAGCAGACTATTAATGGTATAACAACCATCGTCAAATTTTGTCTTACTTTTGCGGTTGACTATGGTTATGCCTCCGTGGTGATAGCTTTGCTGGTAATGATTAAAATAGTGGTGGAAAGAGTGCGTAGCAACAAGATCAATGATTGGTCTTCAGGAGATGCAAATAGATTTGTCGTCGATTATGCTCTTGCAATGTTAGAGTATTTACTCTTCCGTAAAATAGATTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

516

Amino Acids

57.23

Weight (kDa)

5.65

Isoelectric Point (pI)

32.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CaATP_NAI PF12515 5 - 50 4.3e-15 Ca2+-ATPase N terminal autoinhibitory domain
Cation_ATPase_N PF00690 124 - 191 2.7e-12 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 246 - 340 5.8e-21 P-type ATPase actuator domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0021379)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0483411
rosa_laevigata RLG00000023282 RLG00000023285
rosa_multiflora Rmu_sc0007793.1_g000006
rosa_roxburghii Rroxscaffold_6G00398350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1045
AasI GACNNNNNNGTC 1 cut(s) 29
AatII GACGTC 1 cut(s) 33
Acc36I ACCTGC 1 cut(s) 1045
AccB7I CCANNNNNTGG 1 cut(s) 833
AccI GTMKAC 1 cut(s) 442
AccII CGCG 1 cut(s) 90
AciI CCGC 7 cut(s) 88, 105, 218, 475, 830, 1221, 1376
AcoI YGGCCR 1 cut(s) 602
AcsI RAATTY 3 cut(s) 189, 630, 1358
AcuI CTGAAG 3 cut(s) 306, 615, 1458
AcyI GRCGYC 1 cut(s) 30
AfiI CCNNNNNNNGG 6 cut(s) 52, 111, 422, 481, 833, 1054
AgsI TTSAA 9 cut(s) 188, 272, 367, 396, 573, 578, 700, 1188, 1210
AjnI CCWGG 1 cut(s) 107
AloI GAACNNNNNNTCC 2 cut(s) 783, 815
AluBI AGCT 6 cut(s) 9, 524, 858, 879, 1063, 1409
AluI AGCT 6 cut(s) 9, 524, 858, 879, 1063, 1409
Alw26I GTCTC 1 cut(s) 1037
AlwNI CAGNNNCTG 1 cut(s) 260
AoxI GGCC 4 cut(s) 57, 291, 360, 602
ApeKI GCWGC 2 cut(s) 345, 855
ApoI RAATTY 3 cut(s) 189, 630, 1358
AseI ATTAAT 2 cut(s) 542, 1335
AspS9I GGNCC 1 cut(s) 993
AsuHPI GGTGA 7 cut(s) 308, 827, 899, 1069, 1126, 1333, 1414
AvaII GGWCC 1 cut(s) 993
BaeI ACNNNNGTAYC 2 cut(s) 387, 420
BalI TGGCCA 1 cut(s) 604
BarI GAAGNNNNNNTAC 2 cut(s) 1517, 1549
BbsI GAAGAC 2 cut(s) 1176, 1464
BbvI GCAGC 2 cut(s) 357, 867
BccI CCATC 6 cut(s) 380, 743, 827, 947, 1006, 1358
BceAI ACGGC 3 cut(s) 65, 548, 1181
BciT130I CCWGG 1 cut(s) 109
BciVI GTATCC 1 cut(s) 415
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 1037
BfaI CTAG 2 cut(s) 224, 744
BfmI CTRYAG 2 cut(s) 527, 1052
BfuAI ACCTGC 1 cut(s) 1045
BfuI GTATCC 1 cut(s) 415
BisI GCNGC 5 cut(s) 88, 219, 346, 856, 1221
BlsI GCNGC 5 cut(s) 89, 220, 347, 857, 1222
Bme1390I CCNGG 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 993
BmgT120I GGNCC 1 cut(s) 993
BmiI GGNNCC 2 cut(s) 116, 940
BmrFI CCNGG 1 cut(s) 109
BmsI GCATC 4 cut(s) 341, 842, 1183, 1471
BpiI GAAGAC 2 cut(s) 1176, 1464
BpmI CTGGAG 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 46
BsaHI GRCGYC 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 1037
BsaJI CCNNGG 4 cut(s) 147, 373, 564, 1398
BsaXI ACNNNNNCTCC 2 cut(s) 783, 813
Bsc4I CCNNNNNNNGG 6 cut(s) 52, 111, 422, 481, 833, 1054
Bse1I ACTGG 2 cut(s) 254, 899
Bse3DI GCAATG 3 cut(s) 1171, 1224, 1521
BseBI CCWGG 1 cut(s) 109
BseDI CCNNGG 4 cut(s) 147, 373, 564, 1398
BseGI GGATG 3 cut(s) 754, 838, 857
BseLI CCNNNNNNNGG 6 cut(s) 52, 111, 422, 481, 833, 1054
BseMI GCAATG 3 cut(s) 1171, 1224, 1521
BseMII CTCAG 3 cut(s) 144, 652, 1013
BseNI ACTGG 2 cut(s) 254, 899
BseRI GAGGAG 1 cut(s) 1047
BseXI GCAGC 2 cut(s) 357, 867
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 4 cut(s) 59, 293, 362, 604
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 2 cut(s) 398, 597
BslI CCNNNNNNNGG 6 cut(s) 52, 111, 422, 481, 833, 1054
BsmAI GTCTC 1 cut(s) 1037
BsmFI GGGAC 2 cut(s) 398, 597
BsmI GAATGC 2 cut(s) 227, 312
BsnI GGCC 4 cut(s) 59, 293, 362, 604
Bso31I GGTCTC 1 cut(s) 1037
Bsp143I GATC 5 cut(s) 130, 262, 497, 1170, 1458
BspACI CCGC 7 cut(s) 88, 105, 218, 475, 830, 1221, 1376
BspANI GGCC 4 cut(s) 59, 293, 362, 604
BspCNI CTCAG 3 cut(s) 145, 651, 1014
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 116, 940
BspMAI CTGCAG 1 cut(s) 1056
BspMI ACCTGC 1 cut(s) 1045
BspTNI GGTCTC 1 cut(s) 1037
BsrDI GCAATG 3 cut(s) 1171, 1224, 1521
BsrI ACTGG 2 cut(s) 254, 899
BssECI CCNNGG 4 cut(s) 147, 373, 564, 1398
BssMI GATC 5 cut(s) 130, 262, 497, 1170, 1458
BssNAI GTATAC 1 cut(s) 443
BssNI GRCGYC 1 cut(s) 30
Bst1107I GTATAC 1 cut(s) 443
Bst2UI CCWGG 1 cut(s) 109
Bst4CI ACNGT 5 cut(s) 282, 377, 982, 1135, 1270
Bst6I CTCTTC 2 cut(s) 282, 1538
BstACI GRCGYC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 691
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 4 cut(s) 153, 638, 1022, 1160
BstDSI CCRYGG 3 cut(s) 373, 564, 1398
BstEII GGTNACC 1 cut(s) 815
BstF5I GGATG 3 cut(s) 754, 838, 857
BstFNI CGCG 1 cut(s) 90
BstKTI GATC 5 cut(s) 133, 265, 500, 1173, 1461
BstMAI GTCTC 1 cut(s) 1037
BstMBI GATC 5 cut(s) 130, 262, 497, 1170, 1458
BstMWI GCNNNNNNNGC 7 cut(s) 49, 175, 224, 474, 691, 1060, 1226
BstNI CCWGG 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 616
BstPI GGTNACC 1 cut(s) 815
BstSCI CCNGG 1 cut(s) 107
BstSFI CTRYAG 2 cut(s) 527, 1052
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 357, 867
BstV2I GAAGAC 2 cut(s) 1176, 1464
BstZ17I GTATAC 1 cut(s) 443
BsuI GTATCC 1 cut(s) 415
BsuRI GGCC 4 cut(s) 59, 293, 362, 604
BtgI CCRYGG 3 cut(s) 373, 564, 1398
BtsCI GGATG 3 cut(s) 754, 838, 857
BtsI GCAGTG 2 cut(s) 663, 1049
BtsIMutI CAGTG 3 cut(s) 663, 906, 1049
BveI ACCTGC 1 cut(s) 1045
Cac8I GCNNGC 1 cut(s) 144
CaiI CAGNNNCTG 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 993
CseI GACGC 1 cut(s) 79
CspCI CAANNNNNGTGG 4 cut(s) 561, 596, 1242, 1277
CviAII CATG 4 cut(s) 350, 613, 691, 1306
DdeI CTNAG 4 cut(s) 153, 638, 1022, 1160
DpnI GATC 5 cut(s) 132, 264, 499, 1172, 1460
DpnII GATC 5 cut(s) 130, 262, 497, 1170, 1458
DrdI GACNNNNNNGTC 1 cut(s) 29
DseDI GACNNNNNNGTC 1 cut(s) 29
EaeI YGGCCR 1 cut(s) 602
Eam1104I CTCTTC 2 cut(s) 282, 1538
EarI CTCTTC 2 cut(s) 282, 1538
Eco147I AGGCCT 2 cut(s) 59, 362
Eco31I GGTCTC 1 cut(s) 1037
Eco47I GGWCC 1 cut(s) 993
Eco57I CTGAAG 3 cut(s) 306, 615, 1458
Eco91I GGTNACC 1 cut(s) 815
EcoO65I GGTNACC 1 cut(s) 815
EcoRII CCWGG 1 cut(s) 107
FaeI CATG 4 cut(s) 353, 616, 694, 1309
FalI AAGNNNNNCTT 2 cut(s) 570, 602
FaqI GGGAC 2 cut(s) 398, 597
FatI CATG 4 cut(s) 349, 612, 690, 1305
FauI CCCGC 1 cut(s) 112
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 1 cut(s) 442
Fnu4HI GCNGC 5 cut(s) 88, 219, 346, 856, 1221
FokI GGATG 3 cut(s) 761, 845, 864
Fsp4HI GCNGC 5 cut(s) 88, 219, 346, 856, 1221
FspBI CTAG 2 cut(s) 224, 744
GluI GCNGC 5 cut(s) 88, 219, 346, 856, 1221
GsuI CTGGAG 1 cut(s) 261
HaeIII GGCC 4 cut(s) 59, 293, 362, 604
HapII CCGG 1 cut(s) 53
HgaI GACGC 1 cut(s) 79
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 4 cut(s) 353, 616, 694, 1309
HincII GTYRAC 2 cut(s) 251, 1381
HindII GTYRAC 2 cut(s) 251, 1381
HindIII AAGCTT 1 cut(s) 877
HinfI GANTC 2 cut(s) 247, 872
HpaII CCGG 1 cut(s) 53
HphI GGTGA 7 cut(s) 308, 827, 899, 1069, 1126, 1333, 1414
Hpy166II GTNNAC 4 cut(s) 211, 251, 443, 1381
Hpy188I TCNGA 4 cut(s) 119, 262, 286, 1023
Hpy188III TCNNGA 5 cut(s) 97, 134, 849, 936, 1476
Hpy8I GTNNAC 4 cut(s) 211, 251, 443, 1381
Hpy99I CGWCG 4 cut(s) 32, 95, 413, 1502
HpyAV CCTTC 5 cut(s) 416, 590, 602, 614, 1309
HpyCH4III ACNGT 5 cut(s) 282, 377, 982, 1135, 1270
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 9 cut(s) 16, 332, 694, 855, 949, 1054, 1229, 1484, 1514
HpyF10VI GCNNNNNNNGC 7 cut(s) 49, 175, 224, 474, 691, 1060, 1226
HpyF3I CTNAG 4 cut(s) 153, 638, 1022, 1160
HpySE526I ACGT 1 cut(s) 30
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 4 cut(s) 353, 616, 694, 1309
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 5 cut(s) 130, 262, 497, 1170, 1458
Lsp1109I GCAGC 2 cut(s) 357, 867
LweI GCATC 4 cut(s) 341, 842, 1183, 1471
MaeI CTAG 2 cut(s) 224, 744
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 7 cut(s) 661, 739, 815, 973, 1114, 1231, 1264
MalI GATC 5 cut(s) 132, 264, 499, 1172, 1460
MboI GATC 5 cut(s) 130, 262, 497, 1170, 1458
MfeI CAATTG 2 cut(s) 67, 573
MlsI TGGCCA 1 cut(s) 604
MluNI TGGCCA 1 cut(s) 604
MlyI GAGTC 2 cut(s) 256, 881
MmeI TCCRAC 1 cut(s) 142
Mox20I TGGCCA 1 cut(s) 604
MscI TGGCCA 1 cut(s) 604
MseI TTAA 6 cut(s) 357, 470, 536, 542, 1335, 1425
Msp20I TGGCCA 1 cut(s) 604
MspA1I CMGCKG 1 cut(s) 830
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 109
MunI CAATTG 2 cut(s) 67, 573
Mva1269I GAATGC 2 cut(s) 227, 312
MvaI CCWGG 1 cut(s) 109
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 7 cut(s) 49, 175, 224, 474, 691, 1060, 1226
NdeII GATC 5 cut(s) 130, 262, 497, 1170, 1458
NlaIII CATG 4 cut(s) 353, 616, 694, 1309
NlaIV GGNNCC 2 cut(s) 116, 940
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 4 cut(s) 661, 739, 815, 1114
NspI RCATGY 1 cut(s) 616
PaqCI CACCTGC 1 cut(s) 1045
PceI AGGCCT 2 cut(s) 59, 362
PctI GAATGC 2 cut(s) 227, 312
PflMI CCANNNNNTGG 1 cut(s) 833
PkrI GCNGC 5 cut(s) 89, 220, 347, 857, 1222
PleI GAGTC 2 cut(s) 255, 880
PpsI GAGTC 2 cut(s) 255, 880
PshBI ATTAAT 2 cut(s) 542, 1335
Psp6I CCWGG 1 cut(s) 107
PspEI GGTNACC 1 cut(s) 815
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 116, 940
PspPI GGNCC 1 cut(s) 993
PstI CTGCAG 1 cut(s) 1056
PstNI CAGNNNCTG 1 cut(s) 260
SaqAI TTAA 6 cut(s) 357, 470, 536, 542, 1335, 1425
SatI GCNGC 5 cut(s) 88, 219, 346, 856, 1221
Sau3AI GATC 5 cut(s) 130, 262, 497, 1170, 1458
Sau96I GGNCC 1 cut(s) 993
SchI GAGTC 2 cut(s) 256, 881
ScrFI CCNGG 1 cut(s) 109
SfaNI GCATC 4 cut(s) 341, 842, 1183, 1471
SfcI CTRYAG 2 cut(s) 527, 1052
SinI GGWCC 1 cut(s) 993
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
SseBI AGGCCT 2 cut(s) 59, 362
SsiI CCGC 7 cut(s) 88, 105, 218, 475, 830, 1221, 1376
SspMI CTAG 2 cut(s) 224, 744
StuI AGGCCT 2 cut(s) 59, 362
StyD4I CCNGG 1 cut(s) 107
TaaI ACNGT 5 cut(s) 282, 377, 982, 1135, 1270
TaiI ACGT 1 cut(s) 33
TaqI TCGA 3 cut(s) 27, 193, 1500
TaqII GACCGA 1 cut(s) 1010
TauI GCSGC 3 cut(s) 90, 221, 1223
Tru1I TTAA 6 cut(s) 357, 470, 536, 542, 1335, 1425
Tru9I TTAA 6 cut(s) 357, 470, 536, 542, 1335, 1425
TscAI CASTG 3 cut(s) 670, 906, 1056
TseFI GTSAC 4 cut(s) 661, 739, 815, 1114
TseI GCWGC 2 cut(s) 345, 855
Tsp45I GTSAC 4 cut(s) 661, 739, 815, 1114
TspDTI ATGAA 5 cut(s) 220, 435, 633, 791, 832
TspGWI ACGGA 3 cut(s) 397, 1387, 1526
TspRI CASTG 3 cut(s) 670, 906, 1056
Van91I CCANNNNNTGG 1 cut(s) 833
VpaK11BI GGWCC 1 cut(s) 993
VspI ATTAAT 2 cut(s) 542, 1335
XapI RAATTY 3 cut(s) 189, 630, 1358
XceI RCATGY 1 cut(s) 616
XmiI GTMKAC 1 cut(s) 442
XspI CTAG 2 cut(s) 224, 744
ZraI GACGTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.