RchiOBHm_Chr3g0487081

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0029923
Physical Location & Seq
Forward (+)
34224056 .. 34224527
472 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45152

Sequence Viewer

Length: 267 bp
ATGCCATTTCAGCTGGATATTGTTATTTGGTGTGCGTTACTTGGTGCTTGTGGTTTGCATTCAAGTTTGGAACTTGGTGAGTCTGCGGCAGAGGAACTTGATAAACTAGAAAGTGACCATGCTGCAATATATTCAACGCTTTCAAGGATTCATGGGGAAAGAGGAGTTTGGAATAGTGTGCTCGAGTTAAGGAAGAAAATGAAAGAGAAAGGCGTTCAAAAGCAGAATGCAGTTAGCTGGGTTGAGTCTGCACGAGTAATTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

88

Amino Acids

9.83

Weight (kDa)

6.27

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E_motif PF20431 20 - 82 1.2e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029923)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0487081
rosa_samantha Rh3AG279100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 86
AgsI TTSAA 4 cut(s) 63, 135, 144, 218
AluBI AGCT 2 cut(s) 13, 237
AluI AGCT 2 cut(s) 13, 237
Alw21I GWGCWC 1 cut(s) 183
Ama87I CYCGRG 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 89
AvaI CYCGRG 1 cut(s) 182
BauI CACGAG 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 109
BfaI CTAG 1 cut(s) 107
BisI GCNGC 2 cut(s) 87, 123
BlsI GCNGC 2 cut(s) 88, 124
BmeT110I CYCGRG 1 cut(s) 182
BseRI GAGGAG 1 cut(s) 177
BseXI GCAGC 1 cut(s) 109
BseYI CCCAGC 1 cut(s) 237
BsgI GTGCAG 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 182
BsmI GAATGC 2 cut(s) 58, 232
BsoBI CYCGRG 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 183
BspACI CCGC 1 cut(s) 86
BssSI CACGAG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 252
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 109
CviAII CATG 2 cut(s) 119, 152
CviJI RGCY 2 cut(s) 13, 237
CviKI_1 RGCY 2 cut(s) 13, 237
Eco88I CYCGRG 1 cut(s) 182
FaeI CATG 2 cut(s) 122, 155
FaiI YATR 3 cut(s) 120, 130, 153
FatI CATG 2 cut(s) 118, 151
Fnu4HI GCNGC 2 cut(s) 87, 123
Fsp4HI GCNGC 2 cut(s) 87, 123
FspBI CTAG 1 cut(s) 107
GluI GCNGC 2 cut(s) 87, 123
GsaI CCCAGC 1 cut(s) 241
Hin1II CATG 2 cut(s) 122, 155
HinfI GANTC 3 cut(s) 80, 148, 245
HphI GGTGA 1 cut(s) 89
HpyCH4V TGCA 4 cut(s) 58, 125, 230, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
Hsp92II CATG 2 cut(s) 122, 155
LpnPI CCDG 1 cut(s) 223
Lsp1109I GCAGC 1 cut(s) 109
MaeI CTAG 1 cut(s) 107
MaeIII GTNAC 2 cut(s) 36, 113
MboII GAAGA 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 1 cut(s) 258
MlyI GAGTC 2 cut(s) 89, 254
MnlI CCTC 2 cut(s) 85, 155
MseI TTAA 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 13
Mva1269I GAATGC 2 cut(s) 58, 232
MwoI GCNNNNNNNGC 1 cut(s) 10
NlaIII CATG 2 cut(s) 122, 155
NmuCI GTSAC 1 cut(s) 113
PaeR7I CTCGAG 1 cut(s) 182
PctI GAATGC 2 cut(s) 58, 232
PfeI GAWTC 1 cut(s) 148
PkrI GCNGC 2 cut(s) 88, 124
PleI GAGTC 2 cut(s) 88, 253
PpsI GAGTC 2 cut(s) 88, 253
PspFI CCCAGC 1 cut(s) 237
PspXI VCTCGAGB 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 13
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 2 cut(s) 87, 123
SchI GAGTC 2 cut(s) 89, 254
SduI GDGCHC 1 cut(s) 183
SetI ASST 2 cut(s) 15, 239
Sfr274I CTCGAG 1 cut(s) 182
SlaI CTCGAG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 1 cut(s) 258
SsiI CCGC 1 cut(s) 86
SspMI CTAG 1 cut(s) 107
TaqI TCGA 1 cut(s) 183
TasI AATT 1 cut(s) 258
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 2 cut(s) 140, 215
XhoI CTCGAG 1 cut(s) 182
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.