Rh3AG279100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0029923
Physical Location & Seq
Forward (+)
32487401 .. 32488964
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG279100.1

Sequence Viewer

Length: 543 bp
ATGAGCAAATTTACTTGTTTGCAAGTGGCTATCTCCACCTGGGGAACAGCCAAAGGAGTCACAATCGGAGTCAAAATCTCCCCTGACATCCTACTCTTATTGGTCTCCCAATGGAGAGATTCTCTTCAGGAACAATCTCAGGTTCTGGTTAATCAACAGCTGGATATTGTTATTTGGTGTGCGTTACTTGGTGCTTGTGGTTTGCATTCAAGTTTGGAACTTGGTGAGTCTGCGGCAGAGGAACTTGATAAACTAGAAAGTGACCATGCTGCAATATATTCAACGCTTTCAAGGATTCATGGGGAAAGAGGAGTTTGGAATAGTGTGCTCGAGTTAAGGAAGAAAATGAAAGAGAAAGGCGTTCAAAAGCAGAATGCAGTTAGCTGGGTTGAGTCTGCACGATTTGATCAAAAACTCAACAGCAACACAACAAAAGACAGGATAGTTATTGGGTTGCTACTGAGACTGCATCTGAGTAGGGTGGGTAAGGCGACAGCAGTGATAGGAGTAACAATAAATAGACCCCTTTTTTCAACCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

180

Amino Acids

19.88

Weight (kDa)

8.82

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E_motif PF20431 69 - 131 7.6e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029923)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0487081
rosa_samantha Rh3AG279100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 233
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 110
AgsI TTSAA 5 cut(s) 210, 282, 291, 365, 534
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 2 cut(s) 160, 384
AluI AGCT 2 cut(s) 160, 384
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 2 cut(s) 109, 457
AlwNI CAGNNNCTG 1 cut(s) 145
Ama87I CYCGRG 1 cut(s) 329
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 236
AvaI CYCGRG 1 cut(s) 329
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 256
BciT130I CCWGG 1 cut(s) 40
BclI TGATCA 1 cut(s) 406
BcoDI GTCTC 2 cut(s) 109, 457
BfaI CTAG 1 cut(s) 254
BisI GCNGC 2 cut(s) 234, 270
BlsI GCNGC 2 cut(s) 235, 271
Bme1390I CCNGG 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 329
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 478
BplI GAGNNNNNCTC 2 cut(s) 106, 138
BsaI GGTCTC 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 87
BseMII CTCAG 3 cut(s) 152, 452, 464
BseRI GAGGAG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 256
BseYI CCCAGC 1 cut(s) 384
BsgI GTGCAG 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 330
BsiHKCI CYCGRG 1 cut(s) 329
BsmAI GTCTC 2 cut(s) 109, 457
BsmI GAATGC 2 cut(s) 205, 379
Bso31I GGTCTC 1 cut(s) 109
BsoBI CYCGRG 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 1 cut(s) 406
BspACI CCGC 1 cut(s) 233
BspCNI CTCAG 3 cut(s) 151, 453, 465
BspTNI GGTCTC 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 129
BstDEI CTNAG 3 cut(s) 138, 461, 473
BstF5I GGATG 1 cut(s) 87
BstKTI GATC 1 cut(s) 409
BstMAI GTCTC 2 cut(s) 109, 457
BstMBI GATC 1 cut(s) 406
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 256
BtsCI GGATG 1 cut(s) 87
BtsI GCAGTG 1 cut(s) 504
BtsIMutI CAGTG 1 cut(s) 504
CaiI CAGNNNCTG 1 cut(s) 145
CviAII CATG 2 cut(s) 266, 299
CviJI RGCY 4 cut(s) 29, 50, 160, 384
CviKI_1 RGCY 4 cut(s) 29, 50, 160, 384
DdeI CTNAG 3 cut(s) 138, 461, 473
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco31I GGTCTC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 38
FaeI CATG 2 cut(s) 269, 302
FaiI YATR 3 cut(s) 267, 277, 300
FatI CATG 2 cut(s) 265, 298
FbaI TGATCA 1 cut(s) 406
Fnu4HI GCNGC 2 cut(s) 234, 270
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 2 cut(s) 234, 270
FspBI CTAG 1 cut(s) 254
GluI GCNGC 2 cut(s) 234, 270
GsaI CCCAGC 1 cut(s) 388
Hin1II CATG 2 cut(s) 269, 302
HinfI GANTC 6 cut(s) 57, 69, 119, 227, 295, 392
HphI GGTGA 1 cut(s) 236
Hpy188I TCNGA 2 cut(s) 68, 474
Hpy188III TCNNGA 1 cut(s) 128
HpyCH4V TGCA 6 cut(s) 22, 205, 272, 377, 398, 469
HpyF3I CTNAG 3 cut(s) 138, 461, 473
Hsp92II CATG 2 cut(s) 269, 302
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 1 cut(s) 406
LpnPI CCDG 9 cut(s) 25, 52, 96, 113, 125, 131, 146, 370, 424
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 1 cut(s) 478
MaeI CTAG 1 cut(s) 254
MaeIII GTNAC 4 cut(s) 58, 183, 260, 508
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 2 cut(s) 116, 352
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 1 cut(s) 8
MlyI GAGTC 4 cut(s) 66, 78, 236, 401
MnlI CCTC 2 cut(s) 232, 302
MseI TTAA 2 cut(s) 150, 335
MspA1I CMGCKG 1 cut(s) 160
MspR9I CCNGG 1 cut(s) 40
Mva1269I GAATGC 2 cut(s) 205, 379
MvaI CCWGG 1 cut(s) 40
NdeII GATC 1 cut(s) 406
NlaIII CATG 2 cut(s) 269, 302
NmuCI GTSAC 2 cut(s) 58, 260
PaeR7I CTCGAG 1 cut(s) 329
PctI GAATGC 2 cut(s) 205, 379
PfeI GAWTC 2 cut(s) 119, 295
PkrI GCNGC 2 cut(s) 235, 271
PleI GAGTC 4 cut(s) 65, 77, 235, 400
PpsI GAGTC 4 cut(s) 65, 77, 235, 400
Psp6I CCWGG 1 cut(s) 38
PspFI CCCAGC 1 cut(s) 384
PspGI CCWGG 1 cut(s) 38
PspXI VCTCGAGB 1 cut(s) 329
PstNI CAGNNNCTG 1 cut(s) 145
PvuII CAGCTG 1 cut(s) 160
SaqAI TTAA 2 cut(s) 150, 335
SatI GCNGC 2 cut(s) 234, 270
Sau3AI GATC 1 cut(s) 406
SchI GAGTC 4 cut(s) 66, 78, 236, 401
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 1 cut(s) 330
SetI ASST 4 cut(s) 41, 144, 162, 386
SfaNI GCATC 1 cut(s) 478
Sfr274I CTCGAG 1 cut(s) 329
SlaI CTCGAG 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 1 cut(s) 8
SsiI CCGC 1 cut(s) 233
SspMI CTAG 1 cut(s) 254
StyD4I CCNGG 1 cut(s) 38
TaqI TCGA 1 cut(s) 330
TasI AATT 1 cut(s) 8
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 2 cut(s) 119, 295
Tru1I TTAA 2 cut(s) 150, 335
Tru9I TTAA 2 cut(s) 150, 335
TscAI CASTG 1 cut(s) 504
TseFI GTSAC 2 cut(s) 58, 260
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 2 cut(s) 58, 260
TspDTI ATGAA 2 cut(s) 287, 362
TspRI CASTG 1 cut(s) 504
XapI RAATTY 1 cut(s) 8
XhoI CTCGAG 1 cut(s) 329
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.