RchiOBHm_Chr3g0488041
ERF Family

Belongs to the small GTPase superfamily. SAR1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0029985
Physical Location & Seq
Reverse (-)
35566598 .. 35568113
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45245

Sequence Viewer

Length: 387 bp
ATGTTTCTCTTCGACTGGTTCTACGGCGTGCTCGCTTCCCTCGGTCTGTGGCAAAAGGAGGCCAAGATCTTGTTCCTAGGGCTCGATAATGCCGGCAAGACCACCTTGCTTCACATGCTCAAAGATGATAGGCTGGTGCAGCATCAGCCTACGCAATACCCCACATCCGAGGAGTTGAGTATTGGCAAAATCAAGTTCAAGGCCTTTGATTTGGGAGGTCATCAGATTGCTCGCAGGGTCTGGAAGGATTACTACGCAAAGGTTAGCTATACTGTGCTTTATGTAAATGCCGATATTGCTGCTTTACATCATTGTGTCTTTTTAGAGTTGTTTTTTAATGCCTCCTGGATTCCTGTGTGTGATAATTATGTCTACTGTCCGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

128

Amino Acids

14.87

Weight (kDa)

6.95

Isoelectric Point (pI)

25.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 8 - 96 9.6e-32 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029985)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0488041
rosa_samantha Rh1DG088200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 372
AgsI TTSAA 1 cut(s) 199
AjnI CCWGG 1 cut(s) 344
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 1 cut(s) 267
AluI AGCT 1 cut(s) 267
Alw21I GWGCWC 1 cut(s) 33
AlwNI CAGNNNCTG 1 cut(s) 240
AoxI GGCC 2 cut(s) 60, 201
ApeKI GCWGC 2 cut(s) 139, 299
AspA2I CCTAGG 1 cut(s) 76
AvrII CCTAGG 1 cut(s) 76
BanII GRGCYC 1 cut(s) 84
BarI GAAGNNNNNNTAC 2 cut(s) 236, 268
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 151, 286
BceAI ACGGC 1 cut(s) 40
BcgI CGANNNNNNTGC 2 cut(s) 281, 315
BciT130I CCWGG 1 cut(s) 346
BfaI CTAG 1 cut(s) 77
BglII AGATCT 1 cut(s) 66
BisI GCNGC 2 cut(s) 140, 300
BlnI CCTAGG 1 cut(s) 76
BlsI GCNGC 2 cut(s) 141, 301
Bme1390I CCNGG 1 cut(s) 346
BmrFI CCNGG 1 cut(s) 346
BmsI GCATC 1 cut(s) 151
BsaJI CCNNGG 3 cut(s) 40, 76, 168
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 20
BseBI CCWGG 1 cut(s) 346
BseDI CCNNGG 3 cut(s) 40, 76, 168
BseGI GGATG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 2 cut(s) 151, 286
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 2 cut(s) 62, 203
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 93
BsnI GGCC 2 cut(s) 62, 203
Bsp1286I GDGCHC 2 cut(s) 33, 84
Bsp143I GATC 1 cut(s) 66
BspANI GGCC 2 cut(s) 62, 203
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 3 cut(s) 40, 76, 168
BssMI GATC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 346
Bst4CI ACNGT 2 cut(s) 274, 377
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 4 cut(s) 29, 33, 94, 232
BstF5I GGATG 1 cut(s) 164
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 4 cut(s) 115, 139, 145, 296
BstNI CCWGG 1 cut(s) 346
BstNSI RCATGY 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 344
BstV1I GCAGC 2 cut(s) 151, 286
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 2 cut(s) 62, 203
BtsCI GGATG 1 cut(s) 164
Cac8I GCNNGC 4 cut(s) 29, 33, 94, 232
CaiI CAGNNNCTG 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 92
CviAII CATG 1 cut(s) 115
CviJI RGCY 6 cut(s) 62, 82, 133, 148, 203, 267
CviKI_1 RGCY 6 cut(s) 62, 82, 133, 148, 203, 267
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 76
Eco147I AGGCCT 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 1 cut(s) 118
FaiI YATR 4 cut(s) 116, 270, 282, 369
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FatI CATG 1 cut(s) 114
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 2 cut(s) 140, 300
FokI GGATG 1 cut(s) 151
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 2 cut(s) 140, 300
FspBI CTAG 1 cut(s) 77
GluI GCNGC 2 cut(s) 140, 300
HaeIII GGCC 2 cut(s) 62, 203
HapII CCGG 1 cut(s) 93
Hin1II CATG 1 cut(s) 118
HinfI GANTC 1 cut(s) 349
HpaII CCGG 1 cut(s) 93
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 3 cut(s) 169, 225, 381
Hpy188III TCNNGA 1 cut(s) 241
Hpy8I GTNNAC 1 cut(s) 373
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 2 cut(s) 274, 377
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 4 cut(s) 115, 139, 145, 296
Hsp92II CATG 1 cut(s) 118
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 66
LpnPI CCDG 7 cut(s) 106, 119, 220, 226, 331, 358, 366
Lsp1109I GCAGC 2 cut(s) 151, 286
LweI GCATC 1 cut(s) 151
MaeI CTAG 1 cut(s) 77
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 2 cut(s) 33, 84
MluCI AATT 1 cut(s) 364
MnlI CCTC 5 cut(s) 50, 52, 163, 209, 352
MroNI GCCGGC 1 cut(s) 92
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 312
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 346
MvaI CCWGG 1 cut(s) 346
MwoI GCNNNNNNNGC 4 cut(s) 115, 139, 145, 296
NaeI GCCGGC 1 cut(s) 94
NdeII GATC 1 cut(s) 66
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 1 cut(s) 118
NspI RCATGY 1 cut(s) 118
PceI AGGCCT 1 cut(s) 203
PdiI GCCGGC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 349
PfoI TCCNGGA 1 cut(s) 344
PkrI GCNGC 2 cut(s) 141, 301
Psp6I CCWGG 1 cut(s) 344
PspGI CCWGG 1 cut(s) 344
PstNI CAGNNNCTG 1 cut(s) 240
PsuI RGATCY 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 312
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 2 cut(s) 140, 300
Sau3AI GATC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 346
SduI GDGCHC 2 cut(s) 33, 84
SetI ASST 4 cut(s) 107, 220, 264, 269
SfaNI GCATC 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 312
Sse9I AATT 1 cut(s) 364
SseBI AGGCCT 1 cut(s) 203
SspMI CTAG 1 cut(s) 77
StuI AGGCCT 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 344
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 2 cut(s) 274, 377
TaqI TCGA 2 cut(s) 12, 84
TaqII GACCGA 1 cut(s) 32
TasI AATT 1 cut(s) 364
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseI GCWGC 2 cut(s) 139, 299
XceI RCATGY 1 cut(s) 118
XmaJI CCTAGG 1 cut(s) 76
XmiI GTMKAC 1 cut(s) 372
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.