Rh1DG088200
ERF Family

Belongs to the small GTPase superfamily. SAR1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0029985
Physical Location & Seq
Reverse (-)
16405687 .. 16406491
805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG088200.1

Sequence Viewer

Length: 387 bp
ATGTTTCTCTTCGACTGGTTCTACGGCATGCTCGCTTCCCTCGGTCTGTGGCAGAAGGAGACCAAGATCTTGTTCCTAGGGCTCGATAATGCCGGCAAGACCACCTTGCTTCACATGCTCAAAGATGATAGGCTAGTGCAGCATCAGCCTACACAATATCCCACATCTGAGGAGTTGAGTATTGGCAAAATCAAGTTCAAGGCCTTTGATTTGGGAGGTCATCAGATTGCTCGCAGGGTCTGGAAGGATTACTACGCAAAGGTTAGCTATACTGTGCTTTATGTAAATGTCGATATTGCTGCTTTACATCATTGTGTCTTTTTAGAGTTGTTTTTTAATGCCTCATGGATTCCTGTGTGTGATAATTATGTCTACTGGCCGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

128

Amino Acids

15.05

Weight (kDa)

6.95

Isoelectric Point (pI)

22.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 8 - 95 8.6e-32 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029985)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0488041
rosa_samantha Rh1DG088200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 372
AcoI YGGCCR 1 cut(s) 377
AgsI TTSAA 1 cut(s) 199
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 1 cut(s) 267
AluI AGCT 1 cut(s) 267
Alw26I GTCTC 1 cut(s) 53
AlwNI CAGNNNCTG 1 cut(s) 240
AoxI GGCC 2 cut(s) 201, 377
ApeKI GCWGC 2 cut(s) 139, 299
AspA2I CCTAGG 1 cut(s) 76
AvrII CCTAGG 1 cut(s) 76
BanII GRGCYC 1 cut(s) 84
BarI GAAGNNNNNNTAC 2 cut(s) 236, 268
BbvI GCAGC 2 cut(s) 151, 286
BceAI ACGGC 1 cut(s) 40
BcgI CGANNNNNNTGC 2 cut(s) 281, 315
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 2 cut(s) 77, 134
BglII AGATCT 1 cut(s) 66
BisI GCNGC 2 cut(s) 140, 300
BlnI CCTAGG 1 cut(s) 76
BlsI GCNGC 2 cut(s) 141, 301
BmsI GCATC 1 cut(s) 151
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 40, 76
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 2 cut(s) 20, 380
BseDI CCNNGG 2 cut(s) 40, 76
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 2 cut(s) 20, 380
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 2 cut(s) 151, 286
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 2 cut(s) 203, 379
BsiSI CCGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 53
BsnI GGCC 2 cut(s) 203, 379
Bso31I GGTCTC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 1 cut(s) 66
BspANI GGCC 2 cut(s) 203, 379
BspCNI CTCAG 1 cut(s) 160
BspTNI GGTCTC 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 2 cut(s) 20, 380
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 2 cut(s) 40, 76
BssMI GATC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 4 cut(s) 29, 33, 94, 232
BstDEI CTNAG 1 cut(s) 168
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 3 cut(s) 115, 139, 145
BstNSI RCATGY 2 cut(s) 31, 118
BstV1I GCAGC 2 cut(s) 151, 286
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 2 cut(s) 203, 379
Cac8I GCNNGC 4 cut(s) 29, 33, 94, 232
CaiI CAGNNNCTG 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 92
CviAII CATG 3 cut(s) 28, 115, 345
CviJI RGCY 6 cut(s) 82, 133, 148, 203, 267, 379
CviKI_1 RGCY 6 cut(s) 82, 133, 148, 203, 267, 379
DdeI CTNAG 1 cut(s) 168
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 377
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 76
Eco147I AGGCCT 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 3 cut(s) 31, 118, 348
FaiI YATR 6 cut(s) 29, 116, 270, 282, 346, 369
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FatI CATG 3 cut(s) 27, 114, 344
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 2 cut(s) 140, 300
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 2 cut(s) 140, 300
FspBI CTAG 2 cut(s) 77, 134
GluI GCNGC 2 cut(s) 140, 300
HaeIII GGCC 2 cut(s) 203, 379
HapII CCGG 1 cut(s) 93
Hin1II CATG 3 cut(s) 31, 118, 348
HinfI GANTC 1 cut(s) 349
HpaII CCGG 1 cut(s) 93
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 2 cut(s) 169, 225
Hpy188III TCNNGA 1 cut(s) 241
Hpy8I GTNNAC 1 cut(s) 373
HpyAV CCTTC 2 cut(s) 49, 238
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 139, 145
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 3 cut(s) 31, 118, 348
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 66
LpnPI CCDG 5 cut(s) 106, 220, 226, 361, 366
Lsp1109I GCAGC 2 cut(s) 151, 286
LweI GCATC 1 cut(s) 151
MaeI CTAG 2 cut(s) 77, 134
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 1 cut(s) 364
MnlI CCTC 4 cut(s) 50, 163, 209, 352
MroNI GCCGGC 1 cut(s) 92
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 312
MspI CCGG 1 cut(s) 93
MwoI GCNNNNNNNGC 3 cut(s) 115, 139, 145
NaeI GCCGGC 1 cut(s) 94
NdeII GATC 1 cut(s) 66
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 3 cut(s) 31, 118, 348
NspI RCATGY 2 cut(s) 31, 118
PaeI GCATGC 1 cut(s) 31
PceI AGGCCT 1 cut(s) 203
PdiI GCCGGC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 349
PkrI GCNGC 2 cut(s) 141, 301
PstNI CAGNNNCTG 1 cut(s) 240
PsuI RGATCY 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 312
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 2 cut(s) 140, 300
Sau3AI GATC 1 cut(s) 66
SduI GDGCHC 1 cut(s) 84
SetI ASST 4 cut(s) 107, 220, 264, 269
SfaNI GCATC 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 312
SphI GCATGC 1 cut(s) 31
Sse9I AATT 1 cut(s) 364
SseBI AGGCCT 1 cut(s) 203
SspMI CTAG 2 cut(s) 77, 134
StuI AGGCCT 1 cut(s) 203
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 274
TaqI TCGA 3 cut(s) 12, 84, 291
TaqII GACCGA 1 cut(s) 32
TasI AATT 1 cut(s) 364
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseI GCWGC 2 cut(s) 139, 299
XceI RCATGY 2 cut(s) 31, 118
XmaJI CCTAGG 1 cut(s) 76
XmiI GTMKAC 1 cut(s) 372
XspI CTAG 2 cut(s) 77, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.