Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029947

Physical Location & Seq

Genomic Coordinates Reverse (-)

38562497 .. 38568230

Gene Structure 5734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45475

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGTCACCACAGACAGGCAAAGTTCATTTGATAGAATTCTTGCTTCCATTCCCTTTAAAGGCCAGGTCCTTAATAAAACAAGTTTATGGGGGTTTGACAAAACTCGACATATAACATCAAATGCAGTTGTATCAGTCCTAGACGAAAATGTAACTGTGCAAAGAAATGTTCTGTTTTTCCGGTGGAGGTTGTGGTCAATGATATCCATGTCAGATGCAGTTTCTGTTGCATCTTACAATCTGATGCATTTTCTGCTCCCCCATGAGAGCCTGTTTCATGGAGGTTTTGTGACTGGAAGTATTGATGCATCATTATGGACAGTCTATAGAAGTGGCAGTCGAAATTACTATGGCGATGTACTTCCAGACGGCTTGATAATTGAACGTGGACTGATGAATCAAGCGGACTATGGTGAAGTAAGTAGGAAAGCATTAAGCTTGTTTGAGTATGACAGAAGTATGTCATATGATTTGATGTTGGACTGTAAAAATTACATGCATTGTGGTTGTGTGGCTTTGGAGCATGGGTTGATATTGGTAGACACAAAGTATGAATTTGGAAAGGGACACGATGGTTCCATAAATTTGATTGATGAGGTGCATACACCCGATTCAAGCAGATATTGGATTGCACATACTTATGAGGAACATTTTCAAAATGGTCTTGAACCTGAAAATGTTGGTAAGGAGTTCTTGATCTTGTGGTTTAAAGATCATTGCAATCCATATGAAGATGAGATATATTTTCTTGTACGAGACAATCAAATAATCGAAATTCAAGATGCCTTCAACAGAGGTAAAGACCTTGTTTTGATTGACATTCTATTTTTTGTATACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006188 GO:0006189 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046040 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

SAICAR_synt

Protein Analysis

280

Amino Acids

32.42

Weight (kDa)

5.23

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAICAR_synt	PF01259	1 - 57	5.1e-06	SAICAR synthetase
SAICAR_synt	PF01259	166 - 246	6.3e-19	SAICAR synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0029947)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0491851
rosa_samantha	Rh3AG300100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	540, 834
AciI	CCGC	1 cut(s)	404
AcsI	RAATTY	4 cut(s)	36, 554, 583, 774
AfaI	GTAC	2 cut(s)	360, 753
AfiI	CCNNNNNNNGG	2 cut(s)	15, 59
AgsI	TTSAA	6 cut(s)	383, 615, 656, 668, 779, 790
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	1 cut(s)	438
AluI	AGCT	1 cut(s)	438
Alw26I	GTCTC	1 cut(s)	750
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	1 cut(s)	61
ApoI	RAATTY	4 cut(s)	36, 554, 583, 774
Asp700I	GAANNNNTTC	1 cut(s)	651
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	67
BccI	CCATC	1 cut(s)	566
BceAI	ACGGC	1 cut(s)	385
BciT130I	CCWGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	750
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	325
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	577
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	6 cut(s)	205, 234, 239, 295, 317, 772
BsaWI	WCCGGW	1 cut(s)	180
BsaXI	ACNNNNNCTCC	4 cut(s)	273, 303, 512, 542
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 59
Bse1I	ACTGG	1 cut(s)	298
Bse3DI	GCAATG	1 cut(s)	715
BseBI	CCWGG	1 cut(s)	65
BseLI	CCNNNNNNNGG	2 cut(s)	15, 59
BseMI	GCAATG	1 cut(s)	715
BseNI	ACTGG	1 cut(s)	298
BshFI	GGCC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	579
BslI	CCNNNNNNNGG	2 cut(s)	15, 59
BsmAI	GTCTC	1 cut(s)	750
BsmFI	GGGAC	1 cut(s)	579
BsnI	GGCC	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	696, 712
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	577
BsrDI	GCAATG	1 cut(s)	715
BsrI	ACTGG	1 cut(s)	298
BssMI	GATC	2 cut(s)	696, 712
BssNAI	GTATAC	1 cut(s)	835
Bst1107I	GTATAC	1 cut(s)	835
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	3 cut(s)	157, 322, 485
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstEII	GGTNACC	1 cut(s)	4
BstKTI	GATC	2 cut(s)	699, 715
BstMAI	GTCTC	1 cut(s)	750
BstMBI	GATC	2 cut(s)	696, 712
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNI	CCWGG	1 cut(s)	65
BstNSI	RCATGY	1 cut(s)	499
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	1 cut(s)	63
BstSFI	CTRYAG	1 cut(s)	325
BstZ17I	GTATAC	1 cut(s)	835
BsuRI	GGCC	1 cut(s)	63
BtgZI	GCGATG	1 cut(s)	369
CaiI	CAGNNNCTG	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	359, 752
CviAII	CATG	5 cut(s)	208, 263, 278, 496, 524
CviJI	RGCY	5 cut(s)	63, 270, 372, 438, 515
CviKI_1	RGCY	5 cut(s)	63, 270, 372, 438, 515
CviQI	GTAC	2 cut(s)	359, 752
DpnI	GATC	2 cut(s)	698, 714
DpnII	GATC	2 cut(s)	696, 712
DraI	TTTAAA	2 cut(s)	58, 709
Eco32I	GATATC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	67
Eco91I	GGTNACC	1 cut(s)	4
EcoO109I	RGGNCCY	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	4
EcoRI	GAATTC	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	63
EcoRV	GATATC	1 cut(s)	204
EcoT22I	ATGCAT	3 cut(s)	249, 310, 501
FaeI	CATG	5 cut(s)	211, 266, 281, 499, 527
FalI	AAGNNNNNCTT	2 cut(s)	677, 709
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	5 cut(s)	207, 262, 277, 495, 523
FauNDI	CATATG	2 cut(s)	466, 727
FblI	GTMKAC	2 cut(s)	540, 834
FspBI	CTAG	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	181
Hin1II	CATG	5 cut(s)	211, 266, 281, 499, 527
HindIII	AAGCTT	1 cut(s)	436
HinfI	GANTC	2 cut(s)	397, 611
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	3 cut(s)	389, 541, 835
Hpy188I	TCNGA	2 cut(s)	214, 243
Hpy188III	TCNNGA	4 cut(s)	365, 665, 694, 779
Hpy8I	GTNNAC	3 cut(s)	389, 541, 835
HpyAV	CCTTC	1 cut(s)	796
HpyCH4III	ACNGT	3 cut(s)	157, 322, 485
HpyCH4IV	ACGT	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpySE526I	ACGT	1 cut(s)	385
Hsp92II	CATG	5 cut(s)	211, 266, 281, 499, 527
Kzo9I	GATC	2 cut(s)	696, 712
LmnI	GCTCC	2 cut(s)	261, 520
LpnPI	CCDG	7 cut(s)	50, 77, 194, 279, 284, 378, 684
LweI	GCATC	6 cut(s)	205, 234, 239, 295, 317, 772
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	1 cut(s)	385
MaeIII	GTNAC	3 cut(s)	4, 151, 289
MalI	GATC	2 cut(s)	698, 714
MboI	GATC	2 cut(s)	696, 712
MboII	GAAGA	1 cut(s)	743
MluCI	AATT	7 cut(s)	36, 343, 378, 490, 554, 583, 774
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	5 cut(s)	180, 275, 589, 637, 788
Mph1103I	ATGCAT	3 cut(s)	249, 310, 501
MroXI	GAANNNNTTC	1 cut(s)	651
MseI	TTAA	4 cut(s)	57, 72, 434, 708
MslI	CAYNNNNRTG	2 cut(s)	313, 639
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	253
NdeI	CATATG	2 cut(s)	466, 727
NdeII	GATC	2 cut(s)	696, 712
NlaIII	CATG	5 cut(s)	211, 266, 281, 499, 527
NlaIV	GGNNCC	1 cut(s)	577
NmuCI	GTSAC	2 cut(s)	4, 289
NsiI	ATGCAT	3 cut(s)	249, 310, 501
NspI	RCATGY	1 cut(s)	499
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	2 cut(s)	397, 611
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	63
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	577
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	224
RsaI	GTAC	2 cut(s)	360, 753
RsaNI	GTAC	2 cut(s)	359, 752
RseI	CAYNNNNRTG	2 cut(s)	313, 639
SaqAI	TTAA	4 cut(s)	57, 72, 434, 708
Sau3AI	GATC	2 cut(s)	696, 712
Sau96I	GGNCC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	65
SetI	ASST	9 cut(s)	69, 191, 286, 388, 440, 600, 673, 799, 807
SfaNI	GCATC	6 cut(s)	205, 234, 239, 295, 317, 772
SfcI	CTRYAG	1 cut(s)	325
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	2 cut(s)	313, 639
Sse9I	AATT	7 cut(s)	36, 343, 378, 490, 554, 583, 774
SsiI	CCGC	1 cut(s)	404
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	63
TaaI	ACNGT	3 cut(s)	157, 322, 485
TaiI	ACGT	1 cut(s)	388
TaqI	TCGA	3 cut(s)	106, 340, 771
TasI	AATT	7 cut(s)	36, 343, 378, 490, 554, 583, 774
TatI	WGTACW	1 cut(s)	358
TfiI	GAWTC	2 cut(s)	397, 611
Tru1I	TTAA	4 cut(s)	57, 72, 434, 708
Tru9I	TTAA	4 cut(s)	57, 72, 434, 708
TseFI	GTSAC	2 cut(s)	4, 289
Tsp45I	GTSAC	2 cut(s)	4, 289
TspDTI	ATGAA	5 cut(s)	15, 266, 410, 567, 744
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	4 cut(s)	36, 554, 583, 774
XceI	RCATGY	1 cut(s)	499
XmiI	GTMKAC	2 cut(s)	540, 834
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	1 cut(s)	140
Zsp2I	ATGCAT	3 cut(s)	249, 310, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.