Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0029947

Physical Location & Seq

Genomic Coordinates Reverse (-)

36911900 .. 36923597

Gene Structure 11698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG300100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTCAGAGGTTTTGTGACTGGAAGTATTGATGCATCATTATGGACAGTCTATAGAAGTGGCAGTCGAAATTACTATGGCGATATAATTGAACGTGGACTGATGAATCAAGCGGACTATGGTGAAGTAAGTAGGAAAGCATTAAGCTTGTTTGAGTATGACAGAAGTATGTCATATGATTTGATGTTGGACTGTAAAAATTACATGCATTGTGGTTGTGTGGCTTTGGAGCATGGGTTGATATTGGTAGACACAAAGTATGAATTTGGAAAGGGACACGATGGTTCCATAAATTTGATTGATGAGGTGCATACACCCGATTCAAGCAGATATTGGATTGCACATACTTATGAGGAACATTTTCAAAATGGTCTTGAACCTGAAAATGTTGGTAAGGAGTTCTTGATCTTGTGGTTTAAAGATCATTGCAATCCATATGAAGATGAGATATATTTTCTTGTACGAGACAATCAAATAATCGAAATTCAAGATGCCTTCAACAGAGGAAGGGCTTGTGCAGCTGCTGCCGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCCATGACTCCTCTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006188 GO:0006189 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046040 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

SAICAR_synt

Protein Analysis

196

Amino Acids

22.55

Weight (kDa)

4.8

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAICAR_synt	PF01259	68 - 149	1.8e-19	SAICAR synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029947)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0491851
rosa_samantha	Rh3AG300100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	1 cut(s)	113
AcsI	RAATTY	3 cut(s)	263, 292, 483
AfaI	GTAC	1 cut(s)	462
AgsI	TTSAA	8 cut(s)	92, 324, 365, 377, 488, 499, 536, 560
AluBI	AGCT	2 cut(s)	147, 521
AluI	AGCT	2 cut(s)	147, 521
Alw26I	GTCTC	1 cut(s)	459
AlwNI	CAGNNNCTG	1 cut(s)	524
ApeKI	GCWGC	3 cut(s)	518, 521, 524
ApoI	RAATTY	3 cut(s)	263, 292, 483
Asp700I	GAANNNNTTC	2 cut(s)	360, 564
AsuHPI	GGTGA	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	508, 511, 530
BccI	CCATC	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	52
BisI	GCNGC	3 cut(s)	519, 522, 525
BlsI	GCNGC	3 cut(s)	520, 523, 526
BmiI	GGNNCC	1 cut(s)	286
BmsI	GCATC	3 cut(s)	22, 44, 481
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bse1I	ACTGG	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	424
BseMI	GCAATG	1 cut(s)	424
BseNI	ACTGG	1 cut(s)	25
BseRI	GAGGAG	1 cut(s)	570
BseXI	GCAGC	3 cut(s)	508, 511, 530
BsgI	GTGCAG	1 cut(s)	537
BsiSI	CCGG	1 cut(s)	528
BslFI	GGGAC	1 cut(s)	288
BsmAI	GTCTC	1 cut(s)	459
BsmFI	GGGAC	1 cut(s)	288
Bsp143I	GATC	3 cut(s)	405, 421, 547
BspACI	CCGC	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	25
BssMI	GATC	3 cut(s)	405, 421, 547
Bst4CI	ACNGT	2 cut(s)	49, 194
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstKTI	GATC	3 cut(s)	408, 424, 550
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	3 cut(s)	405, 421, 547
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 524
BstNSI	RCATGY	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	52
BstV1I	GCAGC	3 cut(s)	508, 511, 530
CaiI	CAGNNNCTG	1 cut(s)	524
Csp6I	GTAC	1 cut(s)	461
CviAII	CATG	3 cut(s)	205, 233, 574
CviJI	RGCY	4 cut(s)	147, 224, 512, 521
CviKI_1	RGCY	4 cut(s)	147, 224, 512, 521
CviQI	GTAC	1 cut(s)	461
DpnI	GATC	3 cut(s)	407, 423, 549
DpnII	GATC	3 cut(s)	405, 421, 547
DraI	TTTAAA	1 cut(s)	418
EcoT22I	ATGCAT	2 cut(s)	37, 210
FaeI	CATG	3 cut(s)	208, 236, 577
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	3 cut(s)	204, 232, 573
FauNDI	CATATG	2 cut(s)	175, 436
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	3 cut(s)	519, 522, 525
Fsp4HI	GCNGC	3 cut(s)	519, 522, 525
GluI	GCNGC	3 cut(s)	519, 522, 525
HapII	CCGG	1 cut(s)	528
Hin1II	CATG	3 cut(s)	208, 236, 577
HindIII	AAGCTT	1 cut(s)	145
HinfI	GANTC	3 cut(s)	106, 320, 577
HpaII	CCGG	1 cut(s)	528
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	2 cut(s)	98, 250
Hpy188I	TCNGA	1 cut(s)	8
Hpy188III	TCNNGA	4 cut(s)	374, 403, 488, 551
Hpy8I	GTNNAC	2 cut(s)	98, 250
HpyAV	CCTTC	2 cut(s)	501, 505
HpyCH4III	ACNGT	2 cut(s)	49, 194
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	6 cut(s)	35, 208, 310, 341, 429, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 524
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	3 cut(s)	208, 236, 577
Kzo9I	GATC	3 cut(s)	405, 421, 547
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	4 cut(s)	6, 393, 541, 576
Lsp1109I	GCAGC	3 cut(s)	508, 511, 530
LweI	GCATC	3 cut(s)	22, 44, 481
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	3 cut(s)	407, 423, 549
MboI	GATC	3 cut(s)	405, 421, 547
MboII	GAAGA	1 cut(s)	452
MluCI	AATT	7 cut(s)	70, 87, 199, 263, 292, 483, 543
MlyI	GAGTC	1 cut(s)	571
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	4 cut(s)	298, 346, 497, 591
Mph1103I	ATGCAT	2 cut(s)	37, 210
MroXI	GAANNNNTTC	2 cut(s)	360, 564
MseI	TTAA	3 cut(s)	143, 417, 585
MslI	CAYNNNNRTG	2 cut(s)	40, 348
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	2 cut(s)	518, 524
NdeI	CATATG	2 cut(s)	175, 436
NdeII	GATC	3 cut(s)	405, 421, 547
NlaIII	CATG	3 cut(s)	208, 236, 577
NlaIV	GGNNCC	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	16
NsiI	ATGCAT	2 cut(s)	37, 210
NspI	RCATGY	1 cut(s)	208
PdmI	GAANNNNTTC	2 cut(s)	360, 564
PfeI	GAWTC	2 cut(s)	106, 320
PkrI	GCNGC	3 cut(s)	520, 523, 526
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
PspN4I	GGNNCC	1 cut(s)	286
PstNI	CAGNNNCTG	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
RseI	CAYNNNNRTG	2 cut(s)	40, 348
SaqAI	TTAA	3 cut(s)	143, 417, 585
SatI	GCNGC	3 cut(s)	519, 522, 525
Sau3AI	GATC	3 cut(s)	405, 421, 547
SchI	GAGTC	1 cut(s)	571
SetI	ASST	7 cut(s)	13, 97, 149, 309, 382, 523, 565
SfaNI	GCATC	3 cut(s)	22, 44, 481
SfcI	CTRYAG	1 cut(s)	52
SmiMI	CAYNNNNRTG	2 cut(s)	40, 348
Sse9I	AATT	7 cut(s)	70, 87, 199, 263, 292, 483, 543
SsiI	CCGC	1 cut(s)	113
TaaI	ACNGT	2 cut(s)	49, 194
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	67, 480
TasI	AATT	7 cut(s)	70, 87, 199, 263, 292, 483, 543
TfiI	GAWTC	2 cut(s)	106, 320
Tru1I	TTAA	3 cut(s)	143, 417, 585
Tru9I	TTAA	3 cut(s)	143, 417, 585
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	3 cut(s)	518, 521, 524
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	3 cut(s)	119, 276, 453
XapI	RAATTY	3 cut(s)	263, 292, 483
XceI	RCATGY	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	249
XmnI	GAANNNNTTC	2 cut(s)	360, 564
Zsp2I	ATGCAT	2 cut(s)	37, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.