Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029983

Physical Location & Seq

Genomic Coordinates Forward (+)

48345653 .. 48346470

Gene Structure 818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45923

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCACAAGGTTGTTCAGATCTGACTCGAGGGTCACTGATTGTGTACAAGACGGGGATCAGGGGATGGGTAAAGTTTTGGTTGATGCCAGAGTTGGGCTACCACTTTTGGGCTCAACTTAATGGAACAGTTCATTGTGACTACCCCTTATTAACATTCTTTTGTTTTCTCAACAGGATTGAGATCCTCTTCCATGATATCAATGTCCATATTCCCCATCATATATCTCCAAGGATTCCAAGCTATAACTTAGGGGGGCAACATGAACCTCCGTTTGGTTCATATGTTCCACATGATAATGTTAATTATCCTTATAATTTGCCTATTCCAAGCTTCAACATGACCTGTTCAGAGGTTCATGATGCACTTGTTCTTTGTTTTATTTCCTCACATATCAAACAGATAAGTACACATGTGCACCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009941 GO:0009987 GO:0010109 GO:0010205 GO:0016053 GO:0019222 GO:0019752 GO:0019904 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0032787 GO:0042548 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0072330 GO:1901576 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko02020 map02020

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

141

Amino Acids

16.22

Weight (kDa)

6.61

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029983)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496941
rosa_samantha	Rh2CG320000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	315
AasI	GACNNNNNNGTC	1 cut(s)	31
AclWI	GGATC	2 cut(s)	65, 178
AfaI	GTAC	2 cut(s)	47, 409
AfiI	CCNNNNNNNGG	3 cut(s)	95, 109, 275
AflIII	ACRYGT	1 cut(s)	412
AgsI	TTSAA	1 cut(s)	337
AjuI	GAANNNNNNNTTGG	2 cut(s)	258, 290
AluBI	AGCT	2 cut(s)	243, 333
AluI	AGCT	2 cut(s)	243, 333
Alw21I	GWGCWC	1 cut(s)	420
Alw44I	GTGCAC	1 cut(s)	416
AlwI	GGATC	2 cut(s)	65, 178
Ama87I	CYCGRG	1 cut(s)	27
ApaLI	GTGCAC	1 cut(s)	416
AvaI	CYCGRG	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	420
BanII	GRGCYC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	420
BccI	CCATC	2 cut(s)	60, 225
BglII	AGATCT	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	27
BmsI	GCATC	2 cut(s)	75, 352
BsaBI	GATNNNNATC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 109, 275
Bse8I	GATNNNNATC	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	230
BseGI	GGATG	1 cut(s)	71
BseJI	GATNNNNATC	1 cut(s)	182
BseLI	CCNNNNNNNGG	3 cut(s)	95, 109, 275
BseSI	GKGCMC	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	27
BslI	CCNNNNNNNGG	3 cut(s)	95, 109, 275
BsoBI	CYCGRG	1 cut(s)	27
Bsp1286I	GDGCHC	2 cut(s)	115, 420
Bsp1407I	TGTACA	1 cut(s)	45
Bsp143I	GATC	3 cut(s)	19, 57, 183
BspHI	TCATGA	1 cut(s)	358
BspPI	GGATC	2 cut(s)	65, 178
BsrGI	TGTACA	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	3 cut(s)	19, 57, 183
BssT1I	CCWWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	194
BstAUI	TGTACA	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	71
BstKTI	GATC	3 cut(s)	22, 60, 186
BstMBI	GATC	3 cut(s)	19, 57, 183
BstNSI	RCATGY	1 cut(s)	416
BstSLI	GKGCMC	1 cut(s)	420
BstX2I	RGATCY	2 cut(s)	19, 183
BstYI	RGATCY	2 cut(s)	19, 183
BtsCI	GGATG	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	35
CciI	TCATGA	1 cut(s)	358
Csp6I	GTAC	2 cut(s)	46, 408
CviAII	CATG	6 cut(s)	194, 263, 293, 340, 359, 413
CviJI	RGCY	4 cut(s)	99, 113, 243, 333
CviKI_1	RGCY	4 cut(s)	99, 113, 243, 333
CviQI	GTAC	2 cut(s)	46, 408
DdeI	CTNAG	1 cut(s)	250
DpnI	GATC	3 cut(s)	21, 59, 185
DpnII	GATC	3 cut(s)	19, 57, 183
DrdI	GACNNNNNNGTC	1 cut(s)	31
DseDI	GACNNNNNNGTC	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	115
Eco32I	GATATC	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	27
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	6 cut(s)	197, 266, 296, 343, 362, 416
FatI	CATG	6 cut(s)	193, 262, 292, 339, 358, 412
FauNDI	CATATG	1 cut(s)	283
FokI	GGATG	1 cut(s)	78
FriOI	GRGCYC	1 cut(s)	115
Hin1II	CATG	6 cut(s)	197, 266, 296, 343, 362, 416
HindIII	AAGCTT	1 cut(s)	331
HinfI	GANTC	2 cut(s)	25, 235
Hpy166II	GTNNAC	3 cut(s)	46, 410, 418
Hpy188I	TCNGA	3 cut(s)	19, 24, 352
Hpy188III	TCNNGA	1 cut(s)	359
Hpy8I	GTNNAC	3 cut(s)	46, 410, 418
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	2 cut(s)	365, 418
HpyF3I	CTNAG	1 cut(s)	250
Hsp92II	CATG	6 cut(s)	197, 266, 296, 343, 362, 416
Kzo9I	GATC	3 cut(s)	19, 57, 183
LpnPI	CCDG	4 cut(s)	46, 102, 160, 358
LweI	GCATC	2 cut(s)	75, 352
MaeIII	GTNAC	2 cut(s)	33, 137
MalI	GATC	3 cut(s)	21, 59, 185
MboI	GATC	3 cut(s)	19, 57, 183
MboII	GAAGA	1 cut(s)	181
MflI	RGATCY	2 cut(s)	19, 183
MhlI	GDGCHC	2 cut(s)	115, 420
MluCI	AATT	2 cut(s)	304, 316
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	5 cut(s)	23, 197, 279, 346, 397
MseI	TTAA	3 cut(s)	120, 152, 303
MslI	CAYNNNNRTG	1 cut(s)	297
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	3 cut(s)	19, 57, 183
NlaIII	CATG	6 cut(s)	197, 266, 296, 343, 362, 416
NmuCI	GTSAC	2 cut(s)	33, 137
NspI	RCATGY	1 cut(s)	416
PaeR7I	CTCGAG	1 cut(s)	27
PagI	TCATGA	1 cut(s)	358
PciI	ACATGT	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	235
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PscI	ACATGT	1 cut(s)	412
PsiI	TTATAA	1 cut(s)	315
PspXI	VCTCGAGB	1 cut(s)	27
PsuI	RGATCY	2 cut(s)	19, 183
RsaI	GTAC	2 cut(s)	47, 409
RsaNI	GTAC	2 cut(s)	46, 408
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	120, 152, 303
Sau3AI	GATC	3 cut(s)	19, 57, 183
SchI	GAGTC	1 cut(s)	19
SduI	GDGCHC	2 cut(s)	115, 420
SetI	ASST	6 cut(s)	13, 245, 271, 335, 347, 357
SfaNI	GCATC	2 cut(s)	75, 352
Sfr274I	CTCGAG	1 cut(s)	27
SlaI	CTCGAG	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
Sse9I	AATT	2 cut(s)	304, 316
StyI	CCWWGG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	28
TasI	AATT	2 cut(s)	304, 316
TatI	WGTACW	2 cut(s)	45, 407
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	3 cut(s)	120, 152, 303
Tru9I	TTAA	3 cut(s)	120, 152, 303
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	2 cut(s)	33, 137
Tsp45I	GTSAC	2 cut(s)	33, 137
TspDTI	ATGAA	4 cut(s)	122, 270, 279, 347
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	1 cut(s)	42
VneI	GTGCAC	1 cut(s)	416
XceI	RCATGY	1 cut(s)	416
XhoI	CTCGAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.