Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0029983

Physical Location & Seq

Genomic Coordinates Forward (+)

41059852 .. 41064977

Gene Structure 5126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG320000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCCCAAGGTGTCTTCCAGTTGAGAAGAAGCTGGATTGAGATCCTCTGCCATGATATCAATGTCCATATTCCCCATCATATGTCTCCAAGGATTCCAAGCTATAACTTAGGGGGGCAACATGAACCTCTGTTTGGTTCATATGTTCCACACGAGAATGTTAATTATCCTTATAATTTGCCTATTCCAAGCTTCAACATGACCTGTTCAGAGATGGACCCTGTCAATGACAATGCTCAAGAAGTTCAAAATGCTCAAGGTGATCTTGTTGAAAATAATGAGAATGTGATGCATGATTACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009941 GO:0009987 GO:0010109 GO:0010205 GO:0016053 GO:0019222 GO:0019752 GO:0019904 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0032787 GO:0042548 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0072330 GO:1901576 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko02020 map02020

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

101

Amino Acids

11.64

Weight (kDa)

4.89

Isoelectric Point (pI)

68.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029983)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496941
rosa_samantha	Rh2CG320000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	174
AclWI	GGATC	1 cut(s)	37
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	3 cut(s)	196, 248, 272
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AluBI	AGCT	3 cut(s)	33, 102, 192
AluI	AGCT	3 cut(s)	33, 102, 192
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	3
AspS9I	GGNCC	2 cut(s)	4, 217
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	217
BauI	CACGAG	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	7
BccI	CCATC	2 cut(s)	84, 208
BcoDI	GTCTC	1 cut(s)	90
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	2 cut(s)	4, 217
BmiI	GGNNCC	1 cut(s)	219
BmsI	GCATC	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	7
BpuEI	CTTGAG	2 cut(s)	222, 240
BsaBI	GATNNNNATC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	7, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	19
Bse8I	GATNNNNATC	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	7, 89
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseNI	ACTGG	1 cut(s)	19
BshFI	GGCC	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	42, 262
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	7, 89
BssMI	GATC	2 cut(s)	42, 262
BssSI	CACGAG	1 cut(s)	152
BssT1I	CCWWGG	2 cut(s)	7, 89
Bst2BI	CACGAG	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	109
BstKTI	GATC	2 cut(s)	45, 265
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	2 cut(s)	42, 262
BstV2I	GAAGAC	1 cut(s)	7
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	5
Cfr13I	GGNCC	2 cut(s)	4, 217
CviAII	CATG	4 cut(s)	53, 122, 199, 293
CviJI	RGCY	4 cut(s)	5, 33, 102, 192
CviKI_1	RGCY	4 cut(s)	5, 33, 102, 192
DdeI	CTNAG	1 cut(s)	109
DpnI	GATC	2 cut(s)	44, 264
DpnII	GATC	2 cut(s)	42, 262
Eco130I	CCWWGG	2 cut(s)	7, 89
Eco32I	GATATC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	217
EcoRV	GATATC	1 cut(s)	58
EcoT14I	CCWWGG	2 cut(s)	7, 89
EcoT22I	ATGCAT	1 cut(s)	294
ErhI	CCWWGG	2 cut(s)	7, 89
FaeI	CATG	4 cut(s)	56, 125, 202, 296
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FatI	CATG	4 cut(s)	52, 121, 198, 292
FauNDI	CATATG	2 cut(s)	81, 142
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	56, 125, 202, 296
HindIII	AAGCTT	1 cut(s)	190
HinfI	GANTC	1 cut(s)	94
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	1 cut(s)	239
HpyCH4V	TGCA	1 cut(s)	292
HpyF3I	CTNAG	1 cut(s)	109
Hsp92II	CATG	4 cut(s)	56, 125, 202, 296
Kzo9I	GATC	2 cut(s)	42, 262
LpnPI	CCDG	4 cut(s)	19, 32, 217, 234
LweI	GCATC	1 cut(s)	279
MalI	GATC	2 cut(s)	44, 264
MboI	GATC	2 cut(s)	42, 262
MboII	GAAGA	2 cut(s)	7, 39
MflI	RGATCY	1 cut(s)	42
MluCI	AATT	2 cut(s)	163, 175
MnlI	CCTC	2 cut(s)	56, 138
Mph1103I	ATGCAT	1 cut(s)	294
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	156
NdeI	CATATG	2 cut(s)	81, 142
NdeII	GATC	2 cut(s)	42, 262
NlaIII	CATG	4 cut(s)	56, 125, 202, 296
NlaIV	GGNNCC	1 cut(s)	219
NsiI	ATGCAT	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	94
PflFI	GACNNNGTC	1 cut(s)	221
PsiI	TTATAA	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	2 cut(s)	4, 217
PsuI	RGATCY	1 cut(s)	42
PsyI	GACNNNGTC	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	162
Sau3AI	GATC	2 cut(s)	42, 262
Sau96I	GGNCC	2 cut(s)	4, 217
SetI	ASST	7 cut(s)	13, 35, 104, 130, 194, 206, 262
SfaNI	GCATC	1 cut(s)	279
SinI	GGWCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	2 cut(s)	237, 255
SmoI	CTYRAG	2 cut(s)	237, 255
Sse9I	AATT	2 cut(s)	163, 175
StyI	CCWWGG	2 cut(s)	7, 89
TasI	AATT	2 cut(s)	163, 175
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TspDTI	ATGAA	2 cut(s)	129, 138
Tth111I	GACNNNGTC	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	217
Zsp2I	ATGCAT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.