RchiOBHm_Chr4g0386621

Transmembrane protein 56-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
2110689 .. 2114358
3670 bp
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UTR
Exon/CDS
Intron
PRQ35997

Sequence Viewer

Length: 177 bp
ATGGTGGGATTTGCATATCCTCTTGGTTTCATGTCCACCAGTGGCTATGTCATCCCAAACAAAGAGTTTCACTGGTTGGCTTATGCCCTTTTTGGCATGCTTCTCTGCAAAATTGTTTACAAATTAACAGGTCTTATTAGCCTTCAAAGCTTCAAGGAATATCAGAAATTGAGCTAA

Protein Analysis

58

Amino Acids

6.64

Weight (kDa)

9.21

Isoelectric Point (pI)

27.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030113)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0386621
rosa_roxburghii Rroxscaffold_5G00387000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 146, 154
AluBI AGCT 2 cut(s) 150, 174
AluI AGCT 2 cut(s) 150, 174
Bse1I ACTGG 2 cut(s) 39, 77
BseGI GGATG 1 cut(s) 51
BseNI ACTGG 2 cut(s) 39, 77
BsrI ACTGG 2 cut(s) 39, 77
BstC8I GCNNGC 1 cut(s) 98
BstF5I GGATG 1 cut(s) 51
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 100
BtsCI GGATG 1 cut(s) 51
BtsIMutI CAGTG 2 cut(s) 46, 70
Cac8I GCNNGC 1 cut(s) 98
CviAII CATG 2 cut(s) 31, 97
CviJI RGCY 5 cut(s) 45, 80, 141, 150, 174
CviKI_1 RGCY 5 cut(s) 45, 80, 141, 150, 174
FaeI CATG 2 cut(s) 34, 100
FaiI YATR 5 cut(s) 16, 32, 48, 84, 98
FatI CATG 2 cut(s) 30, 96
FokI GGATG 1 cut(s) 38
Hin1II CATG 2 cut(s) 34, 100
HindIII AAGCTT 1 cut(s) 148
Hpy166II GTNNAC 2 cut(s) 36, 118
Hpy188I TCNGA 1 cut(s) 165
Hpy8I GTNNAC 2 cut(s) 36, 118
HpyAV CCTTC 1 cut(s) 152
HpyCH4V TGCA 2 cut(s) 14, 108
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
Hsp92II CATG 2 cut(s) 34, 100
LpnPI CCDG 3 cut(s) 52, 58, 114
MluCI AATT 3 cut(s) 111, 122, 167
MnlI CCTC 1 cut(s) 30
MseI TTAA 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 147
NlaIII CATG 2 cut(s) 34, 100
NspI RCATGY 1 cut(s) 100
PaeI GCATGC 1 cut(s) 100
SaqAI TTAA 1 cut(s) 125
SetI ASST 3 cut(s) 133, 152, 176
SgeI CNNG 7 cut(s) 35, 43, 51, 85, 109, 141, 166
SphI GCATGC 1 cut(s) 100
Sse9I AATT 3 cut(s) 111, 122, 167
TasI AATT 3 cut(s) 111, 122, 167
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TscAI CASTG 2 cut(s) 46, 77
TspDTI ATGAA 1 cut(s) 19
TspRI CASTG 2 cut(s) 46, 77
XceI RCATGY 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.