Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030100

Physical Location & Seq

Genomic Coordinates Forward (+)

17854110 .. 17854466

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37236

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCAAGTGAGCCTGGCTGAGTGGGCCAAGATCTGTCATCAGAATGGGGACCTTGATCAAATCATTGATCAAAGTTTGAGAGGTAAGATTTCAGCTGACTGCCTGAATAAGTTCACTGAGGTAGCTATCAGTTGCATGCATGATGATGGGACGGAACGGTCGTCCATGAATGATGTTGTAAAGGAGCTTGAGCTTGCATTGCTGCTTCAGCAGAGTGCAGAAGGGAATACCAAATGCACTGATAGGAATGTTGAAACTGAAACAAGTAGTAGTGACCACAGTTGTGCCACCAACAATTCCGTCAAATGTATATCTGCGACAATCTTCTCTAAGATTAACAACCCAAGTGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

118

Amino Acids

12.89

Weight (kDa)

4.9

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030100)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400311
rosa_multiflora	Rmu_sc0012670.1_g000011

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	157
AcuI	CTGAAG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	254
AjnI	CCWGG	1 cut(s)	12
AleI	CACNNNNGTG	1 cut(s)	282
AluBI	AGCT	4 cut(s)	95, 125, 187, 193
AluI	AGCT	4 cut(s)	95, 125, 187, 193
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	1 cut(s)	202
Asp700I	GAANNNNTTC	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	24, 49
AvaII	GGWCC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	14
BclI	TGATCA	2 cut(s)	55, 67
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	24, 49
BmiI	GGNNCC	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	14
BseMI	GCAATG	1 cut(s)	197
BseMII	CTCAG	2 cut(s)	9, 108
BseXI	GCAGC	1 cut(s)	189
BsgI	GTGCAG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	161
BshFI	GGCC	1 cut(s)	26
BsiEI	CGRYCG	1 cut(s)	161
BslFI	GGGAC	2 cut(s)	62, 163
BsmFI	GGGAC	2 cut(s)	62, 163
BsnI	GGCC	1 cut(s)	26
Bsp143I	GATC	3 cut(s)	30, 55, 67
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	2 cut(s)	10, 109
BspLI	GGNNCC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	197
BssMI	GATC	3 cut(s)	30, 55, 67
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	2 cut(s)	159, 281
BstC8I	GCNNGC	2 cut(s)	137, 195
BstDEI	CTNAG	3 cut(s)	18, 117, 330
BstKTI	GATC	3 cut(s)	33, 58, 70
BstMBI	GATC	3 cut(s)	30, 55, 67
BstMCI	CGRYCG	1 cut(s)	161
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 199, 208
BstNI	CCWGG	1 cut(s)	14
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	26
BtsIMutI	CAGTG	2 cut(s)	114, 237
Cac8I	GCNNGC	2 cut(s)	137, 195
Cfr13I	GGNCC	2 cut(s)	24, 49
CspCI	CAANNNNNGTGG	1 cut(s)	328
CviAII	CATG	3 cut(s)	136, 140, 166
CviJI	RGCY	7 cut(s)	12, 17, 26, 95, 125, 187, 193
CviKI_1	RGCY	7 cut(s)	12, 17, 26, 95, 125, 187, 193
DdeI	CTNAG	3 cut(s)	18, 117, 330
DpnI	GATC	3 cut(s)	32, 57, 69
DpnII	GATC	3 cut(s)	30, 55, 67
DrdI	GACNNNNNNGTC	1 cut(s)	157
DseDI	GACNNNNNNGTC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	12
EcoT22I	ATGCAT	1 cut(s)	141
FaeI	CATG	3 cut(s)	139, 143, 169
FaiI	YATR	4 cut(s)	137, 141, 167, 311
FaqI	GGGAC	2 cut(s)	62, 163
FatI	CATG	3 cut(s)	135, 139, 165
FbaI	TGATCA	2 cut(s)	55, 67
Fnu4HI	GCNGC	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	26
Hin1II	CATG	3 cut(s)	139, 143, 169
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	1 cut(s)	42
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	2 cut(s)	159, 281
HpyCH4V	TGCA	6 cut(s)	4, 135, 139, 197, 218, 237
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 199, 208
HpyF3I	CTNAG	3 cut(s)	18, 117, 330
Hsp92II	CATG	3 cut(s)	139, 143, 169
Ksp22I	TGATCA	2 cut(s)	55, 67
Kzo9I	GATC	3 cut(s)	30, 55, 67
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	2 cut(s)	26, 116
Lsp1109I	GCAGC	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	3 cut(s)	32, 57, 69
MboI	GATC	3 cut(s)	30, 55, 67
MboII	GAAGA	1 cut(s)	316
MflI	RGATCY	1 cut(s)	30
MluCI	AATT	1 cut(s)	295
MnlI	CCTC	2 cut(s)	74, 112
Mph1103I	ATGCAT	1 cut(s)	141
MroXI	GAANNNNTTC	1 cut(s)	110
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	3 cut(s)	42, 144, 282
MspA1I	CMGCKG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	3 cut(s)	23, 199, 208
NdeII	GATC	3 cut(s)	30, 55, 67
NlaIII	CATG	3 cut(s)	139, 143, 169
NlaIV	GGNNCC	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	272
NsiI	ATGCAT	1 cut(s)	141
NspI	RCATGY	1 cut(s)	139
OliI	CACNNNNGTG	1 cut(s)	282
PaeI	GCATGC	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PdmI	GAANNNNTTC	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	204
PpuMI	RGGWCCY	1 cut(s)	49
Psp5II	RGGWCCY	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	50
PspPI	GGNCC	2 cut(s)	24, 49
PspPPI	RGGWCCY	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	30
PvuII	CAGCTG	1 cut(s)	95
RseI	CAYNNNNRTG	3 cut(s)	42, 144, 282
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	3 cut(s)	30, 55, 67
Sau96I	GGNCC	2 cut(s)	24, 49
ScrFI	CCNGG	1 cut(s)	14
SetI	ASST	7 cut(s)	54, 85, 97, 123, 127, 189, 195
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	3 cut(s)	42, 144, 282
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SphI	GCATGC	1 cut(s)	139
Sse9I	AATT	1 cut(s)	295
StyD4I	CCNGG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	159, 281
TasI	AATT	1 cut(s)	295
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	2 cut(s)	121, 244
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	182
TspGWI	ACGGA	2 cut(s)	167, 289
TspRI	CASTG	2 cut(s)	121, 244
VpaK11BI	GGWCC	1 cut(s)	49
XceI	RCATGY	1 cut(s)	139
XmnI	GAANNNNTTC	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.