Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012670.1

Orthogroup ID

OG0030100

Physical Location & Seq

Genomic Coordinates Reverse (-)

49486 .. 49755

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012670.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atggcagccgggtgcctgaataagttcaccgaaatagctatcagttgcatgcatgacaatggaacagaacggccgtccatgactgatgttgttaggggccttgaacttgcattgcagcttcagcagagtgcggaagggaatatcaactgcactgaaaggaatgttgaaactgaaacaagcagcagtgagcaaagttgtgccaccaaagattccattaaatgtatatctgcaacaatcttctctgaggtcaacaactcgagtgggagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

89

Amino Acids

9.56

Weight (kDa)

4.67

Isoelectric Point (pI)

87.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030100)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400311
rosa_multiflora	Rmu_sc0012670.1_g000011

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	12
AciI	CCGC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	104, 167
AluBI	AGCT	2 cut(s)	38, 118
AluI	AGCT	2 cut(s)	38, 118
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	2 cut(s)	71, 97
ApeKI	GCWGC	3 cut(s)	5, 115, 180
Asp700I	GAANNNNTTC	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	97
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	19
AvaI	CYCGRG	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	12
BbvI	GCAGC	3 cut(s)	17, 127, 192
BceAI	ACGGC	2 cut(s)	58, 86
BcnI	CCSGG	1 cut(s)	10
BisI	GCNGC	3 cut(s)	6, 116, 181
BlsI	GCNGC	3 cut(s)	7, 117, 182
Bme1390I	CCNGG	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	2 cut(s)	14, 98
BmrFI	CCNGG	1 cut(s)	10
BpuMI	CCSGG	1 cut(s)	10
Bse3DI	GCAATG	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	110
BseMII	CTCAG	1 cut(s)	234
BseX3I	CGGCCG	1 cut(s)	71
BseXI	GCAGC	3 cut(s)	17, 127, 192
BsgI	GTGCAG	1 cut(s)	133
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	2 cut(s)	73, 99
BshNI	GGYRCC	1 cut(s)	12
BsiEI	CGRYCG	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	9
BsnI	GGCC	2 cut(s)	73, 99
BsoBI	CYCGRG	1 cut(s)	256
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	2 cut(s)	73, 99
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	14, 98
BspT107I	GGYRCC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	243
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	8
BstV1I	GCAGC	3 cut(s)	17, 127, 192
BstZI	CGGCCG	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	73, 99
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	2 cut(s)	150, 190
Cac8I	GCNNGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	97
CspCI	CAANNNNNGTGG	1 cut(s)	241
CviAII	CATG	3 cut(s)	49, 53, 79
CviJI	RGCY	5 cut(s)	8, 38, 73, 99, 118
CviKI_1	RGCY	5 cut(s)	8, 38, 73, 99, 118
DdeI	CTNAG	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	71
EagI	CGGCCG	1 cut(s)	71
EclXI	CGGCCG	1 cut(s)	71
Eco52I	CGGCCG	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	256
EcoO109I	RGGNCCY	1 cut(s)	97
EcoT22I	ATGCAT	1 cut(s)	54
FaeI	CATG	3 cut(s)	52, 56, 82
FaiI	YATR	4 cut(s)	50, 54, 80, 224
FatI	CATG	3 cut(s)	48, 52, 78
Fnu4HI	GCNGC	3 cut(s)	6, 116, 181
Fsp4HI	GCNGC	3 cut(s)	6, 116, 181
GluI	GCNGC	3 cut(s)	6, 116, 181
HaeIII	GGCC	2 cut(s)	73, 99
HapII	CCGG	1 cut(s)	9
Hin1II	CATG	3 cut(s)	52, 56, 82
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	1 cut(s)	209
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	2 cut(s)	27, 250
Hpy188I	TCNGA	1 cut(s)	244
Hpy8I	GTNNAC	2 cut(s)	27, 250
HpyAV	CCTTC	1 cut(s)	128
HpyCH4V	TGCA	6 cut(s)	48, 52, 110, 115, 150, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	52, 56, 82
LpnPI	CCDG	2 cut(s)	22, 29
Lsp1109I	GCAGC	3 cut(s)	17, 127, 192
MboII	GAAGA	1 cut(s)	229
MnlI	CCTC	1 cut(s)	238
Mph1103I	ATGCAT	1 cut(s)	54
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	57
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	121
NciI	CCSGG	1 cut(s)	10
NlaIII	CATG	3 cut(s)	52, 56, 82
NlaIV	GGNNCC	2 cut(s)	14, 98
NsiI	ATGCAT	1 cut(s)	54
NspI	RCATGY	1 cut(s)	52
PaeI	GCATGC	1 cut(s)	52
PaeR7I	CTCGAG	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	3 cut(s)	7, 117, 182
PspN4I	GGNNCC	2 cut(s)	14, 98
PspPI	GGNCC	1 cut(s)	97
PspXI	VCTCGAGB	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	3 cut(s)	6, 116, 181
Sau96I	GGNCC	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	10
SetI	ASST	3 cut(s)	40, 120, 249
Sfr274I	CTCGAG	1 cut(s)	256
SgeI	CNNG	9 cut(s)	21, 22, 28, 61, 65, 91, 113, 119, 189
SlaI	CTCGAG	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
SphI	GCATGC	1 cut(s)	52
SsiI	CCGC	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	8
TaqI	TCGA	1 cut(s)	257
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	2 cut(s)	157, 190
TseI	GCWGC	3 cut(s)	5, 115, 180
TspRI	CASTG	2 cut(s)	157, 190
XceI	RCATGY	1 cut(s)	52
XhoI	CTCGAG	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	23
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.