Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030061

Physical Location & Seq

Genomic Coordinates Forward (+)

22103298 .. 22103613

Gene Structure 316 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37484

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGCCCCAGCTCACTAAGAGATCAAGGATTCCAAATATTATGGATCACGTGATAAAAGATACCATGGATTTAAAACACTTGTACCAGGTCCATTTAAAACACTATGTTGATACTCCTAGACGTGTTGCTGCTGTGGAAGTATTATGTGTGCAACCTAAACCAAGTTATCGACCTTTGGTAATGGATGTACTGCACTCGCTAATCCCTCTTGTGCCTATGGATCTCGGAGGATCGCTGGGAATTACAGACTGCATACCCTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

88

Amino Acids

9.97

Weight (kDa)

8.69

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030061)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0403071
rosa_samantha	Rh4AG117800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	51, 228, 238
AcvI	CACGTG	1 cut(s)	49
AfaI	GTAC	2 cut(s)	83, 189
AflIII	ACRYGT	1 cut(s)	121
AjiI	CACGTC	1 cut(s)	122
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
AlwI	GGATC	3 cut(s)	51, 228, 238
ApeKI	GCWGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	88
BaeI	ACNNNNGTAYC	2 cut(s)	65, 98
BbrPI	CACGTG	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	86
BfaI	CTAG	1 cut(s)	117
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	88
BmgBI	CACGTC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	86
BsaAI	YACGTR	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	115
BseYI	CCCAGC	2 cut(s)	6, 235
BsgI	GTGCAG	1 cut(s)	176
Bsp143I	GATC	4 cut(s)	20, 43, 220, 230
Bsp19I	CCATGG	1 cut(s)	63
BspPI	GGATC	3 cut(s)	51, 228, 238
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	4 cut(s)	20, 43, 220, 230
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	86
BstBAI	YACGTR	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	4 cut(s)	23, 46, 223, 233
BstMBI	GATC	4 cut(s)	20, 43, 220, 230
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	115
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BtgI	CCRYGG	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	88
CsiI	ACCWGGT	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	82, 188
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	1 cut(s)	10
CviKI_1	RGCY	1 cut(s)	10
CviQI	GTAC	2 cut(s)	82, 188
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	4 cut(s)	22, 45, 222, 232
DpnII	GATC	4 cut(s)	20, 43, 220, 230
DraI	TTTAAA	2 cut(s)	72, 96
Eco130I	CCWWGG	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	88
Eco72I	CACGTG	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	1 cut(s)	67
FaiI	YATR	6 cut(s)	41, 65, 105, 145, 218, 254
FatI	CATG	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	1 cut(s)	129
GsaI	CCCAGC	2 cut(s)	10, 239
Hin1II	CATG	1 cut(s)	67
HinfI	GANTC	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	227
HpyCH4IV	ACGT	2 cut(s)	48, 121
HpyCH4V	TGCA	3 cut(s)	151, 193, 252
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	2 cut(s)	48, 121
Hsp92II	CATG	1 cut(s)	67
Kzo9I	GATC	4 cut(s)	20, 43, 220, 230
LpnPI	CCDG	4 cut(s)	20, 71, 98, 221
Lsp1109I	GCAGC	1 cut(s)	115
MabI	ACCWGGT	1 cut(s)	84
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	2 cut(s)	48, 121
MalI	GATC	4 cut(s)	22, 45, 222, 232
MboI	GATC	4 cut(s)	20, 43, 220, 230
MflI	RGATCY	1 cut(s)	220
MluCI	AATT	1 cut(s)	240
MnlI	CCTC	2 cut(s)	216, 221
MseI	TTAA	2 cut(s)	71, 95
MspR9I	CCNGG	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	4 cut(s)	20, 43, 220, 230
NlaIII	CATG	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	130
PmaCI	CACGTG	1 cut(s)	49
PmlI	CACGTG	1 cut(s)	49
Ppu21I	YACGTR	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	84
PspCI	CACGTG	1 cut(s)	49
PspFI	CCCAGC	2 cut(s)	6, 235
PspGI	CCWGG	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	2 cut(s)	83, 189
RsaNI	GTAC	2 cut(s)	82, 188
SaqAI	TTAA	2 cut(s)	71, 95
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	4 cut(s)	20, 43, 220, 230
Sau96I	GGNCC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	86
SetI	ASST	6 cut(s)	12, 51, 90, 124, 157, 175
SexAI	ACCWGGT	1 cut(s)	84
SinI	GGWCC	1 cut(s)	88
Sse9I	AATT	1 cut(s)	240
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	63
TaiI	ACGT	2 cut(s)	51, 124
TaqI	TCGA	1 cut(s)	169
TasI	AATT	1 cut(s)	240
TatI	WGTACW	1 cut(s)	187
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	2 cut(s)	71, 95
Tru9I	TTAA	2 cut(s)	71, 95
TseI	GCWGC	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	88
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.