Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030044

Physical Location & Seq

Genomic Coordinates Reverse (-)

24259429 .. 24260691

Gene Structure 1263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37602

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGTAAAACTTATACTCATTTTTAATTATAACTATGGGGGTACATTTATTGAGTTCCAAAGTGGGATGATTAATGTATCACCAATTGGGCGAAACTATAGCCAAGAGGAAAGAGATGGATTTGAAAGATATGACAAGGTTCACAACGTACGCCTGAAAATGGTTTCTATCCTTCGTGAGAGGTTTGCTCACTTTAACCTGATATTTTCCATTGGAGGACAGATAAGCTTTGATAATGGTGAAGACTTTCATTTCAAAGGAAGATATATCAAAGCACATCAATTACAACTGTTATATGTGACAAGTTGCATAAGCTTGTCCATCTTTCTCTTGGATTTTGTTGTCATGGAAGTACTGAAATTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004615 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006013 GO:0006082 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009628 GO:0009651 GO:0009987 GO:0015031 GO:0015833 GO:0016051 GO:0016053 GO:0016853 GO:0016866 GO:0016868 GO:0019318 GO:0019538 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042364 GO:0042886 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046364 GO:0046394 GO:0046907 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051641 GO:0051649 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMM

Protein Analysis

122

Amino Acids

14.33

Weight (kDa)

7.89

Isoelectric Point (pI)

33.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMM	PF03332	14 - 94	3e-28	Eukaryotic phosphomannomutase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0030044)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0404481
rosa_roxburghii	Rroxscaffold_3G00259810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	30
AfaI	GTAC	3 cut(s)	43, 150, 354
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	125, 256
AluBI	AGCT	2 cut(s)	228, 315
AluI	AGCT	2 cut(s)	228, 315
AseI	ATTAAT	1 cut(s)	72
Asp700I	GAANNNNTTC	1 cut(s)	246
AsuHPI	GGTGA	2 cut(s)	72, 251
BbsI	GAAGAC	1 cut(s)	249
BccI	CCATC	2 cut(s)	110, 329
BfmI	CTRYAG	1 cut(s)	97
BmcAI	AGTACT	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	249
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	160
BsiWI	CGTACG	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	291
BstF5I	GGATG	1 cut(s)	72
BstSFI	CTRYAG	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	72
Csp6I	GTAC	3 cut(s)	42, 149, 353
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	3 cut(s)	102, 228, 315
CviKI_1	RGCY	3 cut(s)	102, 228, 315
CviQI	GTAC	3 cut(s)	42, 149, 353
FaeI	CATG	1 cut(s)	349
FatI	CATG	1 cut(s)	345
FokI	GGATG	1 cut(s)	79
Hin1II	CATG	1 cut(s)	349
HindIII	AAGCTT	2 cut(s)	226, 313
HphI	GGTGA	2 cut(s)	72, 251
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	1 cut(s)	309
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	349
LpnPI	CCDG	2 cut(s)	167, 212
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	298
MboII	GAAGA	2 cut(s)	254, 273
MfeI	CAATTG	1 cut(s)	84
MluCI	AATT	4 cut(s)	25, 84, 281, 359
MnlI	CCTC	3 cut(s)	100, 174, 209
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	3 cut(s)	24, 72, 195
MunI	CAATTG	1 cut(s)	84
NlaIII	CATG	1 cut(s)	349
NmuCI	GTSAC	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	246
Pfl23II	CGTACG	1 cut(s)	148
PshBI	ATTAAT	1 cut(s)	72
PsiI	TTATAA	1 cut(s)	30
PspLI	CGTACG	1 cut(s)	148
RsaI	GTAC	3 cut(s)	43, 150, 354
RsaNI	GTAC	3 cut(s)	42, 149, 353
SaqAI	TTAA	3 cut(s)	24, 72, 195
ScaI	AGTACT	1 cut(s)	354
SetI	ASST	6 cut(s)	141, 150, 185, 201, 230, 317
SfcI	CTRYAG	1 cut(s)	97
SgeI	CNNG	9 cut(s)	116, 148, 166, 188, 211, 315, 328, 343, 358
Sse9I	AATT	4 cut(s)	25, 84, 281, 359
TaaI	ACNGT	1 cut(s)	291
TaiI	ACGT	1 cut(s)	150
TasI	AATT	4 cut(s)	25, 84, 281, 359
TatI	WGTACW	1 cut(s)	352
Tru1I	TTAA	3 cut(s)	24, 72, 195
Tru9I	TTAA	3 cut(s)	24, 72, 195
TseFI	GTSAC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	1 cut(s)	239
VspI	ATTAAT	1 cut(s)	72
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XmnI	GAANNNNTTC	1 cut(s)	246
ZrmI	AGTACT	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.