Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0030044

Physical Location & Seq

Genomic Coordinates Reverse (-)

54201417 .. 54205756

Gene Structure 4340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00259810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGATTAATGTATCACCAATTGGGCGAAACTGTAGCCAAGAGGAAAGAGATGAATTTGAAAGATATGACAAGGTTCACAACGTATGCCCGAAAATGGTTTCTATCCTTTGTGAGAAGTTTGCTCACTTTAACCTGACATTTTCCATAGGAGGACAGATAAGCTTTGATGTAAGTGACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004615 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006013 GO:0006082 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009628 GO:0009651 GO:0009987 GO:0015031 GO:0015833 GO:0016051 GO:0016053 GO:0016853 GO:0016866 GO:0016868 GO:0019318 GO:0019538 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042364 GO:0042886 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046364 GO:0046394 GO:0046907 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051641 GO:0051649 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMM

Protein Analysis

60

Amino Acids

6.87

Weight (kDa)

5.11

Isoelectric Point (pI)

52.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMM	PF03332	1 - 57	2.6e-24	Eukaryotic phosphomannomutase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0030044)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0404481
rosa_roxburghii	Rroxscaffold_3G00259810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	1 cut(s)	59
AluBI	AGCT	1 cut(s)	162
AluI	AGCT	1 cut(s)	162
ApoI	RAATTY	1 cut(s)	53
AseI	ATTAAT	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	94
BslI	CCNNNNNNNGG	1 cut(s)	94
Bst4CI	ACNGT	2 cut(s)	32, 179
BstSFI	CTRYAG	1 cut(s)	31
CviJI	RGCY	2 cut(s)	36, 162
CviKI_1	RGCY	2 cut(s)	36, 162
FaiI	YATR	3 cut(s)	66, 85, 146
HindIII	AAGCTT	1 cut(s)	160
HphI	GGTGA	1 cut(s)	6
Hpy166II	GTNNAC	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	76
HpyCH4III	ACNGT	2 cut(s)	32, 179
HpyCH4IV	ACGT	1 cut(s)	81
HpySE526I	ACGT	1 cut(s)	81
LpnPI	CCDG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	173
MfeI	CAATTG	1 cut(s)	18
MluCI	AATT	2 cut(s)	18, 53
MnlI	CCTC	2 cut(s)	34, 143
MseI	TTAA	2 cut(s)	6, 129
MunI	CAATTG	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	173
PshBI	ATTAAT	1 cut(s)	6
SaqAI	TTAA	2 cut(s)	6, 129
SetI	ASST	4 cut(s)	75, 84, 135, 164
SfcI	CTRYAG	1 cut(s)	31
SgeI	CNNG	4 cut(s)	50, 82, 100, 145
Sse9I	AATT	2 cut(s)	18, 53
TaaI	ACNGT	2 cut(s)	32, 179
TaiI	ACGT	1 cut(s)	84
TasI	AATT	2 cut(s)	18, 53
Tru1I	TTAA	2 cut(s)	6, 129
Tru9I	TTAA	2 cut(s)	6, 129
TseFI	GTSAC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	66
VspI	ATTAAT	1 cut(s)	6
XapI	RAATTY	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.