RchiOBHm_Chr4g0407251

transcriptional co-repressor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
29361651 .. 29362305
655 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37849

Sequence Viewer

Length: 369 bp
ATGAGATTCGCTTTTGGAATAATGTGCATTCGTGTTTCTAAGGGAAGTTCAGCACAGGTGAGGTTCCTGCCAAGAATTGGACAATTTATTGATGCTGAGAGTGATAGGCAGACACATTCACTGCAGGGCACTCCACAGAGGTGCACTCTCTTTGTTGGGATACAAATGTGGCTTCGGTCATTCAAGAGTATGTCAGAGTGTCTCTGGAAAGTGCATTCACGAGCTCAGTTCTATCTCCATAAAAATGTTTGGTGGAGTTTTTTTGTTTTGAGAGAATGTTTGGTGGAGTTATATAGTTTTATAATTGTCCTGCATTTAGTAAGTGCTATCAAGTACTTAATATTTGGTTCTTTTTTAGCTAGCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

122

Amino Acids

14.33

Weight (kDa)

10.05

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0022737)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0407251
rosa_laevigata RLG00000000550
rosa_roxburghii Rroxscaffold_2G00114270
rosa_samantha Rh4DG137000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 302
AccB7I CCANNNNNTGG 1 cut(s) 77
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 184
AleI CACNNNNGTG 1 cut(s) 139
AluBI AGCT 2 cut(s) 224, 359
AluI AGCT 2 cut(s) 224, 359
Alw21I GWGCWC 2 cut(s) 146, 226
Alw26I GTCTC 1 cut(s) 206
Alw44I GTGCAC 1 cut(s) 142
ApaLI GTGCAC 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 70
AsuNHI GCTAGC 1 cut(s) 359
BaeGI GKGCMC 2 cut(s) 131, 146
BaeI ACNNNNGTAYC 2 cut(s) 152, 185
BanII GRGCYC 1 cut(s) 226
BauI CACGAG 1 cut(s) 219
Bbv12I GWGCWC 2 cut(s) 146, 226
BciVI GTATCC 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 1 cut(s) 360
BfmI CTRYAG 1 cut(s) 122
BfuI GTATCC 1 cut(s) 153
BmcAI AGTACT 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 65
BmsI GCATC 1 cut(s) 82
BmtI GCTAGC 1 cut(s) 363
BplI GAGNNNNNCTC 2 cut(s) 130, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMII CTCAG 2 cut(s) 87, 239
BseSI GKGCMC 2 cut(s) 131, 146
BsiHKAI GWGCWC 2 cut(s) 146, 226
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 206
BsmI GAATGC 2 cut(s) 27, 214
Bsp1286I GDGCHC 3 cut(s) 131, 146, 226
BspCNI CTCAG 2 cut(s) 88, 238
BspLI GGNNCC 1 cut(s) 65
BspMAI CTGCAG 1 cut(s) 126
BspOI GCTAGC 1 cut(s) 363
BssSI CACGAG 1 cut(s) 219
Bst2BI CACGAG 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 3 cut(s) 39, 96, 225
BstMAI GTCTC 1 cut(s) 206
BstSFI CTRYAG 1 cut(s) 122
BstSLI GKGCMC 2 cut(s) 131, 146
BsuI GTATCC 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 119
BtsIMutI CAGTG 1 cut(s) 119
Cac8I GCNNGC 1 cut(s) 361
Csp6I GTAC 1 cut(s) 334
CviJI RGCY 3 cut(s) 172, 224, 359
CviKI_1 RGCY 3 cut(s) 172, 224, 359
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 3 cut(s) 39, 96, 225
Ecl136II GAGCTC 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 226
FaiI YATR 5 cut(s) 191, 240, 292, 294, 302
FriOI GRGCYC 1 cut(s) 226
FspBI CTAG 1 cut(s) 360
HinfI GANTC 1 cut(s) 6
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 3 cut(s) 184, 205, 219
Hpy8I GTNNAC 1 cut(s) 144
HpyCH4V TGCA 5 cut(s) 27, 124, 144, 214, 313
HpyF3I CTNAG 3 cut(s) 39, 96, 225
LpnPI CCDG 5 cut(s) 41, 80, 110, 190, 323
LweI GCATC 1 cut(s) 82
MaeI CTAG 1 cut(s) 360
MhlI GDGCHC 3 cut(s) 131, 146, 226
MluCI AATT 3 cut(s) 75, 83, 303
MnlI CCTC 2 cut(s) 54, 132
MseI TTAA 1 cut(s) 338
MslI CAYNNNNRTG 2 cut(s) 139, 243
Mva1269I GAATGC 2 cut(s) 27, 214
NheI GCTAGC 1 cut(s) 359
NlaIV GGNNCC 1 cut(s) 65
OliI CACNNNNGTG 1 cut(s) 139
PctI GAATGC 2 cut(s) 27, 214
PfeI GAWTC 1 cut(s) 6
PflMI CCANNNNNTGG 1 cut(s) 77
PsiI TTATAA 1 cut(s) 302
Psp124BI GAGCTC 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 65
PstI CTGCAG 1 cut(s) 126
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
RseI CAYNNNNRTG 2 cut(s) 139, 243
SacI GAGCTC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 338
ScaI AGTACT 1 cut(s) 335
SduI GDGCHC 3 cut(s) 131, 146, 226
SetI ASST 5 cut(s) 60, 65, 143, 226, 361
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 1 cut(s) 122
SmiMI CAYNNNNRTG 2 cut(s) 139, 243
Sse9I AATT 3 cut(s) 75, 83, 303
SspI AATATT 1 cut(s) 342
SspMI CTAG 1 cut(s) 360
SstI GAGCTC 1 cut(s) 226
TaqII GACCGA 1 cut(s) 165
TasI AATT 3 cut(s) 75, 83, 303
TatI WGTACW 1 cut(s) 333
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TscAI CASTG 1 cut(s) 126
TspRI CASTG 1 cut(s) 126
Van91I CCANNNNNTGG 1 cut(s) 77
VneI GTGCAC 1 cut(s) 142
XspI CTAG 1 cut(s) 360
ZrmI AGTACT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.