Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0022737

Physical Location & Seq

Genomic Coordinates Forward (+)

1943071 .. 1945020

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000550

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTCTTTCTTGATTAGGGAACTGGTGTTCTTGATTTTACAGTTCTTGGACGAGGTGAAGTTCAAGGAAACAGTTCATAACTTGATCTTCACCTTGAAAACTATCCAGTTTGAGCTTGCGTGGGAGAGGTGTAGACAACTCCAAGCTGAGGATGTTGCTGTCAAGGGTAAGGTAGGCAATGTCTATTGGAAGCATGTTGTGCACCAGATCGAAGTATGTAAGGTTGTACTGCATGAAGATGCAGAGTTTGAGGCAAGTGACGTTATCTTAAAGGCAAGGTGCCAGCCAAGAATTGGACAATTTATCGATGCTGAGAGTGACAGACAGACACATTCACTGCAGGGCACTCCACAGAGGTGCACTCTCTTTGTTGGGATACAAATGTGGCTTCGGTCAGTCAAGAGTCTGTCAGAGTGTGGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Protein Analysis

142

Amino Acids

16.4

Weight (kDa)

6.58

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH_TPL	PF17814	6 - 28	6.6e-07	LisH-like dimerisation domain
Hexapep_UGP3_C	PF25441	57 - 95	1.2e-09	UGP3-like, C-terminal hexapeptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022737)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0407251
rosa_laevigata	RLG00000000550
rosa_roxburghii	Rroxscaffold_2G00114270
rosa_samantha	Rh4DG137000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	279
AccB7I	CCANNNNNTGG	1 cut(s)	293
AccI	GTMKAC	1 cut(s)	133
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	2 cut(s)	148, 293
AgsI	TTSAA	2 cut(s)	64, 97
AleI	CACNNNNGTG	1 cut(s)	355
AloI	GAACNNNNNNTCC	2 cut(s)	11, 43
AluBI	AGCT	2 cut(s)	115, 146
AluI	AGCT	2 cut(s)	115, 146
Alw21I	GWGCWC	2 cut(s)	204, 362
Alw44I	GTGCAC	2 cut(s)	200, 358
ApaLI	GTGCAC	2 cut(s)	200, 358
Asp700I	GAANNNNTTC	1 cut(s)	72
AsuHPI	GGTGA	2 cut(s)	67, 82
BaeGI	GKGCMC	3 cut(s)	204, 347, 362
BaeI	ACNNNNGTAYC	2 cut(s)	368, 401
BanI	GGYRCC	1 cut(s)	279
Bbv12I	GWGCWC	2 cut(s)	204, 362
BbvCI	CCTCAGC	1 cut(s)	147
BciVI	GTATCC	1 cut(s)	369
BfmI	CTRYAG	1 cut(s)	338
BfuI	GTATCC	1 cut(s)	369
BmiI	GGNNCC	1 cut(s)	281
BmsI	GCATC	2 cut(s)	229, 298
BplI	GAGNNNNNCTC	2 cut(s)	346, 378
Bpu10I	CCTNAGC	1 cut(s)	147
Bsa29I	ATCGAT	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 293
Bse1I	ACTGG	2 cut(s)	27, 106
Bse3DI	GCAATG	1 cut(s)	184
BseCI	ATCGAT	1 cut(s)	306
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	2 cut(s)	148, 293
BseMI	GCAATG	1 cut(s)	184
BseMII	CTCAG	2 cut(s)	138, 303
BseNI	ACTGG	2 cut(s)	27, 106
BseSI	GKGCMC	3 cut(s)	204, 347, 362
BshNI	GGYRCC	1 cut(s)	279
BshVI	ATCGAT	1 cut(s)	306
BsiHKAI	GWGCWC	2 cut(s)	204, 362
BslI	CCNNNNNNNGG	2 cut(s)	148, 293
Bsp1286I	GDGCHC	3 cut(s)	204, 347, 362
Bsp143I	GATC	2 cut(s)	84, 207
BspCNI	CTCAG	2 cut(s)	139, 304
BspDI	ATCGAT	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	281
BspMAI	CTGCAG	1 cut(s)	342
BspT107I	GGYRCC	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	184
BsrI	ACTGG	2 cut(s)	27, 106
BssMI	GATC	2 cut(s)	84, 207
Bst4CI	ACNGT	2 cut(s)	42, 73
BstAPI	GCANNNNNTGC	1 cut(s)	199
BstC8I	GCNNGC	2 cut(s)	117, 284
BstDEI	CTNAG	2 cut(s)	147, 312
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	2 cut(s)	87, 210
BstMBI	GATC	2 cut(s)	84, 207
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	197
BstSFI	CTRYAG	1 cut(s)	338
BstSLI	GKGCMC	3 cut(s)	204, 347, 362
Bsu15I	ATCGAT	1 cut(s)	306
BsuI	GTATCC	1 cut(s)	369
BsuTUI	ATCGAT	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	157
BtsI	GCAGTG	1 cut(s)	335
BtsIMutI	CAGTG	1 cut(s)	335
Cac8I	GCNNGC	2 cut(s)	117, 284
ClaI	ATCGAT	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	2 cut(s)	194, 233
CviJI	RGCY	4 cut(s)	115, 146, 286, 388
CviKI_1	RGCY	4 cut(s)	115, 146, 286, 388
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	2 cut(s)	147, 312
DpnI	GATC	2 cut(s)	86, 209
DpnII	GATC	2 cut(s)	84, 207
FaeI	CATG	2 cut(s)	197, 236
FaiI	YATR	4 cut(s)	78, 195, 217, 234
FatI	CATG	2 cut(s)	193, 232
FblI	GTMKAC	1 cut(s)	133
FokI	GGATG	1 cut(s)	164
Hin1II	CATG	2 cut(s)	197, 236
HinfI	GANTC	1 cut(s)	403
HphI	GGTGA	2 cut(s)	67, 82
Hpy166II	GTNNAC	3 cut(s)	134, 202, 360
Hpy188I	TCNGA	1 cut(s)	412
Hpy188III	TCNNGA	3 cut(s)	10, 31, 400
Hpy8I	GTNNAC	3 cut(s)	134, 202, 360
HpyCH4III	ACNGT	2 cut(s)	42, 73
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	5 cut(s)	202, 232, 242, 340, 360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	2 cut(s)	147, 312
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	197, 236
Kzo9I	GATC	2 cut(s)	84, 207
LpnPI	CCDG	5 cut(s)	8, 119, 218, 296, 326
LweI	GCATC	2 cut(s)	229, 298
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	2 cut(s)	257, 317
MalI	GATC	2 cut(s)	86, 209
MboI	GATC	2 cut(s)	84, 207
MboII	GAAGA	2 cut(s)	79, 248
MhlI	GDGCHC	3 cut(s)	204, 347, 362
MluCI	AATT	2 cut(s)	291, 299
MlyI	GAGTC	1 cut(s)	412
MnlI	CCTC	5 cut(s)	46, 120, 142, 244, 348
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	1 cut(s)	269
MslI	CAYNNNNRTG	2 cut(s)	237, 355
MwoI	GCNNNNNNNGC	1 cut(s)	199
NdeII	GATC	2 cut(s)	84, 207
NlaIII	CATG	2 cut(s)	197, 236
NlaIV	GGNNCC	1 cut(s)	281
NmuCI	GTSAC	2 cut(s)	257, 317
NspI	RCATGY	1 cut(s)	197
OliI	CACNNNNGTG	1 cut(s)	355
PdmI	GAANNNNTTC	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	293
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	281
PstI	CTGCAG	1 cut(s)	342
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
RseI	CAYNNNNRTG	2 cut(s)	237, 355
SaqAI	TTAA	1 cut(s)	269
Sau3AI	GATC	2 cut(s)	84, 207
SchI	GAGTC	1 cut(s)	412
SduI	GDGCHC	3 cut(s)	204, 347, 362
SfaNI	GCATC	2 cut(s)	229, 298
SfcI	CTRYAG	1 cut(s)	338
SmiMI	CAYNNNNRTG	2 cut(s)	237, 355
Sse9I	AATT	2 cut(s)	291, 299
TaaI	ACNGT	2 cut(s)	42, 73
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	2 cut(s)	210, 306
TaqII	GACCGA	1 cut(s)	381
TasI	AATT	2 cut(s)	291, 299
TatI	WGTACW	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	2 cut(s)	257, 317
Tsp45I	GTSAC	2 cut(s)	257, 317
TspDTI	ATGAA	2 cut(s)	65, 249
TspRI	CASTG	1 cut(s)	342
Van91I	CCANNNNNTGG	1 cut(s)	293
VneI	GTGCAC	2 cut(s)	200, 358
XceI	RCATGY	1 cut(s)	197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.