RchiOBHm_Chr4g0408811

Belongs to the precorrin methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
31653619 .. 31655874
2256 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37989

Sequence Viewer

Length: 396 bp
ATGGCTCTTGTCAGTAGGCTTCAATCTCTGTCCTCCTCTCTGTCTTCCACCCATTTTGGAAAACCCAATTCCTTAAACCCTCAACCTCTTTGCTCTCTACACTTCAACTCCCCTTCTTATACTTCTCCTTTTACAGAGAAGCATTCTATTGAGAGGTACCAAAGAGACCAGTACAATAACCAATTGGAGCAAACCACTCTATGCTCTCTCCTTCCTGATTGTGATGCTGATTCTGATTTCACAAGGCAAAATGACATTGCCTTGCAGCTACCAGAGCTGAGAAAGCTGCTTCAGGTGTTGAGAGAGAAGAGAGAGAGAGAGGGAAGGAGGGTGTTGTGGAGGCAAGTGTGGGCCTGGAAATGTCTTCTTAGTGGGCACTGGGCCTGGGGACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

15.29

Weight (kDa)

8.8

Isoelectric Point (pI)

57.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030088)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0408811
rosa_samantha Rh4AG151900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 156
AccB1I GGYRCC 1 cut(s) 156
AcuI CTGAAG 1 cut(s) 275
AfaI GTAC 2 cut(s) 158, 173
AgsI TTSAA 2 cut(s) 23, 106
AjnI CCWGG 2 cut(s) 353, 383
AluBI AGCT 3 cut(s) 268, 277, 286
AluI AGCT 3 cut(s) 268, 277, 286
Alw26I GTCTC 1 cut(s) 159
AoxI GGCC 2 cut(s) 351, 381
ApeKI GCWGC 2 cut(s) 265, 286
Asp718I GGTACC 1 cut(s) 156
AspS9I GGNCC 3 cut(s) 351, 381, 389
AvaII GGWCC 1 cut(s) 389
BaeGI GKGCMC 1 cut(s) 378
BanI GGYRCC 1 cut(s) 156
BbsI GAAGAC 2 cut(s) 36, 356
BbvI GCAGC 2 cut(s) 273, 277
BciT130I CCWGG 2 cut(s) 355, 385
BcoDI GTCTC 1 cut(s) 159
BisI GCNGC 2 cut(s) 266, 287
BlsI GCNGC 2 cut(s) 267, 288
Bme1390I CCNGG 2 cut(s) 355, 385
Bme18I GGWCC 1 cut(s) 389
BmgT120I GGNCC 3 cut(s) 351, 381, 389
BmiI GGNNCC 2 cut(s) 158, 390
BmrFI CCNGG 2 cut(s) 355, 385
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 1 cut(s) 214
BmuI ACTGGG 1 cut(s) 388
BpiI GAAGAC 2 cut(s) 36, 356
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 384
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bse1I ACTGG 2 cut(s) 169, 383
Bse3DI GCAATG 1 cut(s) 255
BseBI CCWGG 2 cut(s) 355, 385
BseDI CCNNGG 1 cut(s) 384
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 2 cut(s) 169, 383
BseRI GAGGAG 1 cut(s) 25
BseSI GKGCMC 1 cut(s) 378
BseXI GCAGC 2 cut(s) 273, 277
BshFI GGCC 2 cut(s) 353, 383
BshNI GGYRCC 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 142
BsnI GGCC 2 cut(s) 353, 383
Bso31I GGTCTC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 378
BspANI GGCC 2 cut(s) 353, 383
BspCNI CTCAG 1 cut(s) 270
BspLI GGNNCC 2 cut(s) 158, 390
BspT107I GGYRCC 1 cut(s) 156
BspTNI GGTCTC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 255
BsrI ACTGG 2 cut(s) 169, 383
BssECI CCNNGG 1 cut(s) 384
Bst2UI CCWGG 2 cut(s) 355, 385
Bst6I CTCTTC 1 cut(s) 302
BstDEI CTNAG 2 cut(s) 278, 368
BstMAI GTCTC 1 cut(s) 159
BstMWI GCNNNNNNNGC 2 cut(s) 274, 283
BstNI CCWGG 2 cut(s) 355, 385
BstSCI CCNGG 2 cut(s) 353, 383
BstSLI GKGCMC 1 cut(s) 378
BstV1I GCAGC 2 cut(s) 273, 277
BstV2I GAAGAC 2 cut(s) 36, 356
BsuRI GGCC 2 cut(s) 353, 383
BtsIMutI CAGTG 1 cut(s) 376
Cfr13I GGNCC 3 cut(s) 351, 381, 389
Csp6I GTAC 2 cut(s) 157, 172
CspCI CAANNNNNGTGG 2 cut(s) 37, 72
CviJI RGCY 7 cut(s) 5, 19, 268, 277, 286, 353, 383
CviKI_1 RGCY 7 cut(s) 5, 19, 268, 277, 286, 353, 383
CviQI GTAC 2 cut(s) 157, 172
DdeI CTNAG 2 cut(s) 278, 368
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Eco31I GGTCTC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 389
Eco57I CTGAAG 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 389
EcoRII CCWGG 2 cut(s) 353, 383
FaiI YATR 2 cut(s) 120, 202
Fnu4HI GCNGC 2 cut(s) 266, 287
Fsp4HI GCNGC 2 cut(s) 266, 287
GluI GCNGC 2 cut(s) 266, 287
HaeIII GGCC 2 cut(s) 353, 383
HinfI GANTC 1 cut(s) 230
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 1 cut(s) 215
HpyAV CCTTC 3 cut(s) 123, 221, 318
HpyCH4V TGCA 1 cut(s) 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 274, 283
HpyF3I CTNAG 2 cut(s) 278, 368
KpnI GGTACC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 8 cut(s) 182, 228, 278, 285, 340, 364, 367, 370
Lsp1109I GCAGC 2 cut(s) 273, 277
LweI GCATC 1 cut(s) 214
MboII GAAGA 3 cut(s) 36, 319, 356
MfeI CAATTG 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 378
MluCI AATT 2 cut(s) 67, 182
MnlI CCTC 8 cut(s) 43, 46, 90, 96, 147, 313, 321, 333
MseI TTAA 1 cut(s) 74
MspR9I CCNGG 2 cut(s) 355, 385
MunI CAATTG 1 cut(s) 182
Mva1269I GAATGC 1 cut(s) 142
MvaI CCWGG 2 cut(s) 355, 385
MwoI GCNNNNNNNGC 2 cut(s) 274, 283
NlaIV GGNNCC 2 cut(s) 158, 390
PctI GAATGC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 2 cut(s) 267, 288
PpuMI RGGWCCY 1 cut(s) 389
Psp5II RGGWCCY 1 cut(s) 389
Psp6I CCWGG 2 cut(s) 353, 383
PspGI CCWGG 2 cut(s) 353, 383
PspN4I GGNNCC 2 cut(s) 158, 390
PspPI GGNCC 3 cut(s) 351, 381, 389
PspPPI RGGWCCY 1 cut(s) 389
RsaI GTAC 2 cut(s) 158, 173
RsaNI GTAC 2 cut(s) 157, 172
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 2 cut(s) 266, 287
Sau96I GGNCC 3 cut(s) 351, 381, 389
ScrFI CCNGG 2 cut(s) 355, 385
SduI GDGCHC 1 cut(s) 378
SetI ASST 7 cut(s) 88, 158, 270, 279, 288, 297, 394
SfaNI GCATC 1 cut(s) 214
SinI GGWCC 1 cut(s) 389
Sse9I AATT 2 cut(s) 67, 182
StyD4I CCNGG 2 cut(s) 353, 383
TasI AATT 2 cut(s) 67, 182
TatI WGTACW 1 cut(s) 171
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 1 cut(s) 383
TseI GCWGC 2 cut(s) 265, 286
TspRI CASTG 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.