Rh4AG151900

Belongs to the precorrin methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0030088
Physical Location & Seq
Reverse (-)
38423692 .. 38424189
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG151900.1

Sequence Viewer

Length: 498 bp
ATGGCTCTTGTCAGTAGGCTTCAATCTCTGTCCTCCTCTCTGTCTTCCACCCATTTTGGAAAACCCAATTCCTTAAACCCTCAACCCCTTTGCTCTCTACACTTCAACTCCCCTTCTTATACTTCTCCTTTTACAGAGAAGCATTCTATTGAGAGGTACCAGAGAGACCAGTACAATAACCAATTGGAGCAAACCACTCTATGCTCTCTCCTTCCTGATTGTGATGCTGATTCTGATTTCACAAGGCAAAATGACATTGCCTTGCAGCTACCAGAGCTGAGAAAGCTGCTTCAGGTGTTGAGAGAGAAGAGAGAGAGAGAGGGAAGGAGTTATGGAGGCAAGTGTGGGCCTGGAAATGTCTTCTTAGTGGGCACTGGGCCTGGGGACCTTGAACTCCTGACATTGAAGGCTGTTAGAGTTATTCAGAGTGCTGATTTATTGTTGTATGATAGGTTGGTGTCCAATGATGTGTTGGATTTTGTTGCCTCTGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120
Pfam Domains
Protein Families
TP_methylase

Protein Analysis

165

Amino Acids

18.4

Weight (kDa)

5.58

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TP_methylase PF00590 120 - 162 4.5e-11 Tetrapyrrole (Corrin/Porphyrin) Methylases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030088)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0408811
rosa_samantha Rh4AG151900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 156
AccB1I GGYRCC 1 cut(s) 156
AcuI CTGAAG 1 cut(s) 275
AfaI GTAC 2 cut(s) 158, 173
AgsI TTSAA 4 cut(s) 23, 106, 392, 406
AjnI CCWGG 2 cut(s) 349, 379
AluBI AGCT 3 cut(s) 268, 277, 286
AluI AGCT 3 cut(s) 268, 277, 286
Alw26I GTCTC 1 cut(s) 159
AoxI GGCC 2 cut(s) 347, 377
ApeKI GCWGC 2 cut(s) 265, 286
Asp718I GGTACC 1 cut(s) 156
AspS9I GGNCC 3 cut(s) 347, 377, 385
AvaII GGWCC 1 cut(s) 385
BaeGI GKGCMC 1 cut(s) 374
BanI GGYRCC 1 cut(s) 156
BbsI GAAGAC 2 cut(s) 36, 352
BbvI GCAGC 2 cut(s) 273, 277
BciT130I CCWGG 2 cut(s) 351, 381
BcoDI GTCTC 1 cut(s) 159
BisI GCNGC 2 cut(s) 266, 287
BlsI GCNGC 2 cut(s) 267, 288
Bme1390I CCNGG 2 cut(s) 351, 381
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 3 cut(s) 347, 377, 385
BmiI GGNNCC 2 cut(s) 158, 386
BmrFI CCNGG 2 cut(s) 351, 381
BmrI ACTGGG 1 cut(s) 384
BmsI GCATC 2 cut(s) 214, 481
BmuI ACTGGG 1 cut(s) 384
BpiI GAAGAC 2 cut(s) 36, 352
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 380
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bse1I ACTGG 2 cut(s) 169, 379
Bse3DI GCAATG 1 cut(s) 255
BseBI CCWGG 2 cut(s) 351, 381
BseDI CCNNGG 1 cut(s) 380
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 2 cut(s) 169, 379
BseRI GAGGAG 1 cut(s) 25
BseSI GKGCMC 1 cut(s) 374
BseXI GCAGC 2 cut(s) 273, 277
BshFI GGCC 2 cut(s) 349, 379
BshNI GGYRCC 1 cut(s) 156
BslFI GGGAC 1 cut(s) 398
BsmAI GTCTC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 398
BsmI GAATGC 1 cut(s) 142
BsnI GGCC 2 cut(s) 349, 379
Bso31I GGTCTC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 374
BspANI GGCC 2 cut(s) 349, 379
BspCNI CTCAG 1 cut(s) 270
BspLI GGNNCC 2 cut(s) 158, 386
BspT107I GGYRCC 1 cut(s) 156
BspTNI GGTCTC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 255
BsrI ACTGG 2 cut(s) 169, 379
BssECI CCNNGG 1 cut(s) 380
Bst2UI CCWGG 2 cut(s) 351, 381
Bst6I CTCTTC 1 cut(s) 302
BstDEI CTNAG 2 cut(s) 278, 364
BstMAI GTCTC 1 cut(s) 159
BstMWI GCNNNNNNNGC 3 cut(s) 274, 283, 491
BstNI CCWGG 2 cut(s) 351, 381
BstSCI CCNGG 2 cut(s) 349, 379
BstSLI GKGCMC 1 cut(s) 374
BstV1I GCAGC 2 cut(s) 273, 277
BstV2I GAAGAC 2 cut(s) 36, 352
BsuRI GGCC 2 cut(s) 349, 379
BtsIMutI CAGTG 1 cut(s) 372
Cfr13I GGNCC 3 cut(s) 347, 377, 385
Csp6I GTAC 2 cut(s) 157, 172
CspCI CAANNNNNGTGG 2 cut(s) 37, 72
CviJI RGCY 8 cut(s) 5, 19, 268, 277, 286, 349, 379, 410
CviKI_1 RGCY 8 cut(s) 5, 19, 268, 277, 286, 349, 379, 410
CviQI GTAC 2 cut(s) 157, 172
DdeI CTNAG 2 cut(s) 278, 364
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Eco31I GGTCTC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 385
EcoRII CCWGG 2 cut(s) 349, 379
FaiI YATR 4 cut(s) 120, 202, 333, 447
FaqI GGGAC 1 cut(s) 398
Fnu4HI GCNGC 2 cut(s) 266, 287
Fsp4HI GCNGC 2 cut(s) 266, 287
GluI GCNGC 2 cut(s) 266, 287
HaeIII GGCC 2 cut(s) 349, 379
HinfI GANTC 1 cut(s) 230
Hpy188I TCNGA 3 cut(s) 235, 426, 490
Hpy188III TCNNGA 2 cut(s) 215, 397
HpyAV CCTTC 4 cut(s) 123, 221, 318, 400
HpyCH4V TGCA 1 cut(s) 265
HpyF10VI GCNNNNNNNGC 3 cut(s) 274, 283, 491
HpyF3I CTNAG 2 cut(s) 278, 364
KpnI GGTACC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 2 cut(s) 273, 277
LweI GCATC 2 cut(s) 214, 481
MboII GAAGA 3 cut(s) 36, 319, 352
MfeI CAATTG 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 2 cut(s) 67, 182
MmeI TCCRAC 1 cut(s) 453
MnlI CCTC 7 cut(s) 43, 46, 90, 147, 313, 329, 496
MseI TTAA 1 cut(s) 74
MspR9I CCNGG 2 cut(s) 351, 381
MunI CAATTG 1 cut(s) 182
Mva1269I GAATGC 1 cut(s) 142
MvaI CCWGG 2 cut(s) 351, 381
MwoI GCNNNNNNNGC 3 cut(s) 274, 283, 491
NlaIV GGNNCC 2 cut(s) 158, 386
PctI GAATGC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 2 cut(s) 267, 288
PpuMI RGGWCCY 1 cut(s) 385
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 2 cut(s) 349, 379
PspGI CCWGG 2 cut(s) 349, 379
PspN4I GGNNCC 2 cut(s) 158, 386
PspPI GGNCC 3 cut(s) 347, 377, 385
PspPPI RGGWCCY 1 cut(s) 385
RsaI GTAC 2 cut(s) 158, 173
RsaNI GTAC 2 cut(s) 157, 172
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 2 cut(s) 266, 287
Sau96I GGNCC 3 cut(s) 347, 377, 385
ScrFI CCNGG 2 cut(s) 351, 381
SduI GDGCHC 1 cut(s) 374
SetI ASST 7 cut(s) 158, 270, 279, 288, 297, 390, 455
SfaNI GCATC 2 cut(s) 214, 481
SinI GGWCC 1 cut(s) 385
Sse9I AATT 2 cut(s) 67, 182
StyD4I CCNGG 2 cut(s) 349, 379
TasI AATT 2 cut(s) 67, 182
TatI WGTACW 1 cut(s) 171
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 1 cut(s) 379
TseI GCWGC 2 cut(s) 265, 286
TspRI CASTG 1 cut(s) 379
VpaK11BI GGWCC 1 cut(s) 385
XcmI CCANNNNNNNNNTGG 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.