RchiOBHm_Chr4g0411161

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
34963280 .. 34963657
378 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38201

Sequence Viewer

Length: 333 bp
ATGAAAAGCTCATTCCCACACTTAGCCATATTTGAACTAACATTGACCAAGGCTTGCCCTAACACTATTCGACCAAACCTACCTGTCCTCCTCTTCGTGCTCCGCCTTCGACCAAAACCCTCCTCGTCTTCATTCTCCTGCTCCAACCAGAACCCGACCCTCCTTGTCCTCCTCCTTCCGTCTCAGATCAGCTCCTCTGCTCGAAGAAACCTGGGCTCCCTCTCCACTTTTCTCCTCCTCCGACCGAGATCAATTAGTTTCTCATCTCATCTAGGACAACTTCTCATCTCAACTTCTCTCTCCAGATCGGTGTATGAATTTCTCTGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.18

Weight (kDa)

11.26

Isoelectric Point (pI)

68.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024960)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0411161 RchiOBHm_Chr6g0263661
rosa_roxburghii Rroxscaffold_4G00309390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 103
AcsI RAATTY 1 cut(s) 317
AgsI TTSAA 1 cut(s) 35
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 2 cut(s) 9, 192
AluI AGCT 2 cut(s) 9, 192
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 186
ApoI RAATTY 1 cut(s) 317
BanII GRGCYC 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 102
BciT130I CCWGG 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 212
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 286
BsaJI CCNNGG 2 cut(s) 48, 211
BsaXI ACNNNNNCTCC 4 cut(s) 72, 102, 200, 230
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 2 cut(s) 48, 211
BseMII CTCAG 1 cut(s) 197
BseRI GAGGAG 6 cut(s) 80, 112, 161, 184, 224, 227
Bsh1285I CGRYCG 1 cut(s) 245
BsiEI CGRYCG 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 186
BsmBI CGTCTC 1 cut(s) 186
Bsp1286I GDGCHC 2 cut(s) 102, 218
Bsp143I GATC 3 cut(s) 186, 248, 305
BspACI CCGC 1 cut(s) 103
BspCNI CTCAG 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 48, 211
BssMI GATC 3 cut(s) 186, 248, 305
BssT1I CCWWGG 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 22, 183
BstKTI GATC 3 cut(s) 189, 251, 308
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 3 cut(s) 186, 248, 305
BstMCI CGRYCG 1 cut(s) 245
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 55
CviJI RGCY 5 cut(s) 9, 26, 53, 192, 216
CviKI_1 RGCY 5 cut(s) 9, 26, 53, 192, 216
DdeI CTNAG 2 cut(s) 22, 183
DpnI GATC 3 cut(s) 188, 250, 307
DpnII GATC 3 cut(s) 186, 248, 305
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
EciI GGCGGA 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 48
Esp3I CGTCTC 1 cut(s) 186
FaiI YATR 2 cut(s) 29, 315
FriOI GRGCYC 1 cut(s) 218
FspBI CTAG 1 cut(s) 272
GsuI CTGGAG 1 cut(s) 286
Hpy188I TCNGA 3 cut(s) 186, 242, 332
Hpy188III TCNNGA 1 cut(s) 303
HpyAV CCTTC 2 cut(s) 116, 185
HpyF3I CTNAG 2 cut(s) 22, 183
Kzo9I GATC 3 cut(s) 186, 248, 305
LmnI GCTCC 4 cut(s) 105, 146, 197, 221
LpnPI CCDG 6 cut(s) 96, 151, 161, 197, 224, 316
MaeI CTAG 1 cut(s) 272
MalI GATC 3 cut(s) 188, 250, 307
MboI GATC 3 cut(s) 186, 248, 305
MboII GAAGA 3 cut(s) 85, 120, 216
MhlI GDGCHC 2 cut(s) 102, 218
MluCI AATT 2 cut(s) 252, 317
MmeI TCCRAC 2 cut(s) 168, 265
MspR9I CCNGG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 212
NdeII GATC 3 cut(s) 186, 248, 305
NlaIV GGNNCC 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 217
Sau3AI GATC 3 cut(s) 186, 248, 305
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 2 cut(s) 102, 218
SetI ASST 5 cut(s) 11, 81, 85, 194, 213
Sse9I AATT 2 cut(s) 252, 317
SsiI CCGC 1 cut(s) 103
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 48
TaqI TCGA 3 cut(s) 70, 109, 202
TaqII GACCGA 1 cut(s) 259
TasI AATT 2 cut(s) 252, 317
TspDTI ATGAA 3 cut(s) 17, 120, 330
TspGWI ACGGA 1 cut(s) 168
XapI RAATTY 1 cut(s) 317
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.