Rhomboid family
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0411161 RchiOBHm_Chr6g0263661 |
| rosa_roxburghii | Rroxscaffold_4G00309390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 70 |
| AccIII | TCCGGA | 1 cut(s) | 630 |
| AciI | CCGC | 5 cut(s) | 34, 70, 430, 451, 660 |
| AcsI | RAATTY | 5 cut(s) | 20, 53, 521, 618, 745 |
| AcuI | CTGAAG | 2 cut(s) | 108, 581 |
| AfaI | GTAC | 1 cut(s) | 740 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 40, 233 |
| AgsI | TTSAA | 2 cut(s) | 20, 146 |
| AluBI | AGCT | 8 cut(s) | 128, 290, 464, 529, 565, 585, 609, 689 |
| AluI | AGCT | 8 cut(s) | 128, 290, 464, 529, 565, 585, 609, 689 |
| Alw26I | GTCTC | 1 cut(s) | 228 |
| Aor13HI | TCCGGA | 1 cut(s) | 630 |
| AoxI | GGCC | 1 cut(s) | 771 |
| ApeKI | GCWGC | 1 cut(s) | 574 |
| ApoI | RAATTY | 5 cut(s) | 20, 53, 521, 618, 745 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 27 |
| AspA2I | CCTAGG | 1 cut(s) | 280 |
| AspLEI | GCGC | 1 cut(s) | 70 |
| AspS9I | GGNCC | 3 cut(s) | 284, 458, 771 |
| AsuHPI | GGTGA | 2 cut(s) | 494, 674 |
| AvaII | GGWCC | 2 cut(s) | 284, 458 |
| AvrII | CCTAGG | 1 cut(s) | 280 |
| BbsI | GAAGAC | 3 cut(s) | 309, 390, 483 |
| BbvI | GCAGC | 1 cut(s) | 561 |
| BccI | CCATC | 3 cut(s) | 200, 345, 492 |
| BcoDI | GTCTC | 1 cut(s) | 228 |
| BfaI | CTAG | 1 cut(s) | 281 |
| BisI | GCNGC | 1 cut(s) | 575 |
| BlnI | CCTAGG | 1 cut(s) | 280 |
| BlsI | GCNGC | 1 cut(s) | 576 |
| Bme18I | GGWCC | 2 cut(s) | 284, 458 |
| BmgT120I | GGNCC | 3 cut(s) | 284, 458, 771 |
| BpiI | GAAGAC | 3 cut(s) | 309, 390, 483 |
| BsaJI | CCNNGG | 2 cut(s) | 280, 454 |
| BsaWI | WCCGGW | 1 cut(s) | 630 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 138, 168 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 40, 233 |
| BseAI | TCCGGA | 1 cut(s) | 630 |
| BseDI | CCNNGG | 2 cut(s) | 280, 454 |
| BseGI | GGATG | 2 cut(s) | 192, 337 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 40, 233 |
| BseMII | CTCAG | 1 cut(s) | 596 |
| BseRI | GAGGAG | 9 cut(s) | 188, 205, 208, 257, 282, 347, 379, 382, 431 |
| BseXI | GCAGC | 1 cut(s) | 561 |
| BseYI | CCCAGC | 1 cut(s) | 36 |
| Bsh1236I | CGCG | 1 cut(s) | 70 |
| BshFI | GGCC | 1 cut(s) | 773 |
| BsiSI | CCGG | 2 cut(s) | 234, 631 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 40, 233 |
| BsmAI | GTCTC | 1 cut(s) | 228 |
| BsmBI | CGTCTC | 1 cut(s) | 228 |
| BsmI | GAATGC | 2 cut(s) | 577, 594 |
| BsnI | GGCC | 1 cut(s) | 773 |
| Bsp13I | TCCGGA | 1 cut(s) | 630 |
| Bsp1407I | TGTACA | 1 cut(s) | 738 |
| BspACI | CCGC | 5 cut(s) | 34, 70, 430, 451, 660 |
| BspANI | GGCC | 1 cut(s) | 773 |
| BspCNI | CTCAG | 1 cut(s) | 597 |
| BspEI | TCCGGA | 1 cut(s) | 630 |
| BspFNI | CGCG | 1 cut(s) | 70 |
| BsrGI | TGTACA | 1 cut(s) | 738 |
| BssECI | CCNNGG | 2 cut(s) | 280, 454 |
| BssT1I | CCWWGG | 1 cut(s) | 280 |
| Bst4CI | ACNGT | 3 cut(s) | 256, 308, 482 |
| Bst6I | CTCTTC | 4 cut(s) | 306, 330, 365, 480 |
| BstAUI | TGTACA | 1 cut(s) | 738 |
| BstC8I | GCNNGC | 1 cut(s) | 130 |
| BstDEI | CTNAG | 4 cut(s) | 45, 97, 538, 605 |
| BstF5I | GGATG | 2 cut(s) | 192, 337 |
| BstFNI | CGCG | 1 cut(s) | 70 |
| BstHHI | GCGC | 1 cut(s) | 70 |
| BstMAI | GTCTC | 1 cut(s) | 228 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 571, 591, 695 |
| BstUI | CGCG | 1 cut(s) | 70 |
| BstV1I | GCAGC | 1 cut(s) | 561 |
| BstV2I | GAAGAC | 3 cut(s) | 309, 390, 483 |
| BsuRI | GGCC | 1 cut(s) | 773 |
| BtsCI | GGATG | 2 cut(s) | 192, 337 |
| BtsIMutI | CAGTG | 1 cut(s) | 313 |
| Cac8I | GCNNGC | 1 cut(s) | 130 |
| CfoI | GCGC | 1 cut(s) | 70 |
| Cfr13I | GGNCC | 3 cut(s) | 284, 458, 771 |
| Csp6I | GTAC | 1 cut(s) | 739 |
| CviAII | CATG | 4 cut(s) | 599, 639, 667, 736 |
| CviQI | GTAC | 1 cut(s) | 739 |
| DdeI | CTNAG | 4 cut(s) | 45, 97, 538, 605 |
| Eam1104I | CTCTTC | 4 cut(s) | 306, 330, 365, 480 |
| EarI | CTCTTC | 4 cut(s) | 306, 330, 365, 480 |
| EciI | GGCGGA | 1 cut(s) | 440 |
| Eco130I | CCWWGG | 1 cut(s) | 280 |
| Eco47I | GGWCC | 2 cut(s) | 284, 458 |
| Eco57I | CTGAAG | 2 cut(s) | 108, 581 |
| EcoRI | GAATTC | 1 cut(s) | 618 |
| EcoT14I | CCWWGG | 1 cut(s) | 280 |
| ErhI | CCWWGG | 1 cut(s) | 280 |
| Esp3I | CGTCTC | 1 cut(s) | 228 |
| FaeI | CATG | 4 cut(s) | 602, 642, 670, 739 |
| FaiI | YATR | 9 cut(s) | 104, 570, 600, 627, 640, 668, 712, 731, 737 |
| FatI | CATG | 4 cut(s) | 598, 638, 666, 735 |
| FauI | CCCGC | 2 cut(s) | 63, 437 |
| Fnu4HI | GCNGC | 1 cut(s) | 575 |
| FokI | GGATG | 2 cut(s) | 179, 324 |
| Fsp4HI | GCNGC | 1 cut(s) | 575 |
| FspBI | CTAG | 1 cut(s) | 281 |
| GlaI | GCGC | 1 cut(s) | 69 |
| GluI | GCNGC | 1 cut(s) | 575 |
| GsaI | CCCAGC | 1 cut(s) | 40 |
| HaeIII | GGCC | 1 cut(s) | 773 |
| HapII | CCGG | 2 cut(s) | 234, 631 |
| HhaI | GCGC | 1 cut(s) | 70 |
| Hin1II | CATG | 4 cut(s) | 602, 642, 670, 739 |
| Hin6I | GCGC | 1 cut(s) | 68 |
| HinP1I | GCGC | 1 cut(s) | 68 |
| HindIII | AAGCTT | 1 cut(s) | 563 |
| HinfI | GANTC | 2 cut(s) | 316, 490 |
| HpaII | CCGG | 2 cut(s) | 234, 631 |
| HphI | GGTGA | 2 cut(s) | 494, 674 |
| Hpy188I | TCNGA | 8 cut(s) | 28, 183, 203, 342, 377, 458, 495, 606 |
| Hpy188III | TCNNGA | 1 cut(s) | 631 |
| HpyAV | CCTTC | 2 cut(s) | 176, 642 |
| HpyCH4III | ACNGT | 3 cut(s) | 256, 308, 482 |
| HpyCH4V | TGCA | 1 cut(s) | 577 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 571, 591, 695 |
| HpyF3I | CTNAG | 4 cut(s) | 45, 97, 538, 605 |
| Hsp92II | CATG | 4 cut(s) | 602, 642, 670, 739 |
| HspAI | GCGC | 1 cut(s) | 68 |
| Kpn2I | TCCGGA | 1 cut(s) | 630 |
| LmnI | GCTCC | 2 cut(s) | 295, 469 |
| LpnPI | CCDG | 7 cut(s) | 22, 247, 300, 474, 575, 599, 644 |
| Lsp1109I | GCAGC | 1 cut(s) | 561 |
| MaeI | CTAG | 1 cut(s) | 281 |
| MaeIII | GTNAC | 1 cut(s) | 662 |
| MboII | GAAGA | 7 cut(s) | 314, 317, 323, 352, 390, 488, 497 |
| MluCI | AATT | 5 cut(s) | 20, 53, 521, 618, 745 |
| MmeI | TCCRAC | 5 cut(s) | 206, 226, 365, 400, 432 |
| MroI | TCCGGA | 1 cut(s) | 630 |
| MseI | TTAA | 1 cut(s) | 50 |
| MslI | CAYNNNNRTG | 1 cut(s) | 734 |
| MspA1I | CMGCKG | 1 cut(s) | 36 |
| MspI | CCGG | 2 cut(s) | 234, 631 |
| Mva1269I | GAATGC | 2 cut(s) | 577, 594 |
| MvnI | CGCG | 1 cut(s) | 70 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 571, 591, 695 |
| NlaIII | CATG | 4 cut(s) | 602, 642, 670, 739 |
| NmuCI | GTSAC | 1 cut(s) | 662 |
| PctI | GAATGC | 2 cut(s) | 577, 594 |
| PfeI | GAWTC | 2 cut(s) | 316, 490 |
| PkrI | GCNGC | 1 cut(s) | 576 |
| PspFI | CCCAGC | 1 cut(s) | 36 |
| PspPI | GGNCC | 3 cut(s) | 284, 458, 771 |
| RsaI | GTAC | 1 cut(s) | 740 |
| RsaNI | GTAC | 1 cut(s) | 739 |
| RseI | CAYNNNNRTG | 1 cut(s) | 734 |
| SaqAI | TTAA | 1 cut(s) | 50 |
| SatI | GCNGC | 1 cut(s) | 575 |
| Sau96I | GGNCC | 3 cut(s) | 284, 458, 771 |
| SinI | GGWCC | 2 cut(s) | 284, 458 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 734 |
| Sse9I | AATT | 5 cut(s) | 20, 53, 521, 618, 745 |
| SsiI | CCGC | 5 cut(s) | 34, 70, 430, 451, 660 |
| SspMI | CTAG | 1 cut(s) | 281 |
| StyI | CCWWGG | 1 cut(s) | 280 |
| TaaI | ACNGT | 3 cut(s) | 256, 308, 482 |
| TaqI | TCGA | 3 cut(s) | 300, 474, 581 |
| TasI | AATT | 5 cut(s) | 20, 53, 521, 618, 745 |
| TatI | WGTACW | 1 cut(s) | 738 |
| TfiI | GAWTC | 2 cut(s) | 316, 490 |
| Tru1I | TTAA | 1 cut(s) | 50 |
| Tru9I | TTAA | 1 cut(s) | 50 |
| TscAI | CASTG | 1 cut(s) | 313 |
| TseFI | GTSAC | 1 cut(s) | 662 |
| TseI | GCWGC | 1 cut(s) | 574 |
| Tsp45I | GTSAC | 1 cut(s) | 662 |
| TspDTI | ATGAA | 4 cut(s) | 352, 542, 587, 724 |
| TspRI | CASTG | 1 cut(s) | 313 |
| VpaK11BI | GGWCC | 2 cut(s) | 284, 458 |
| XapI | RAATTY | 5 cut(s) | 20, 53, 521, 618, 745 |
| XmaJI | CCTAGG | 1 cut(s) | 280 |
| XspI | CTAG | 1 cut(s) | 281 |