RchiOBHm_Chr4g0413111

nucleosomal DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0030029
Physical Location & Seq
Reverse (-)
37283573 .. 37293576
10004 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38366

Sequence Viewer

Length: 396 bp
ATGTCCCCCTATCGCCGCTCGAATGAAACTGTGTCCCGCCCACCAAATTCCCGGTGTGATGTACTGAATTCAAACATAATCGCAATCAATCTCAATCCAAGAGAATCAATAAGCACAAAGAAACATAGTGAAGCTCGTCACCGTACTTCGGCGTATATCCCAGCCTTCACGTTCCTTGAGGAGTTTTTTCTTCAATCCCTGCTTTCCGATCTCCTTCTCCTCGCTGTCGACAGCTTGGTGCCCTTGATGCTATCGCGGAAGACCTTACGATGTCATTTTGCTCCTCCCTTACCCAAAACCTTGCCTCCATTTCCACGCCCAGACATCAGTGCTCTGCTTCAATCTCAAAGATCTGGAATCAAAAAACAAAACCGAAGAGTTAAAGAGACGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05203 ko05322 map05034 map05202 map05203 map05322
Pfam Domains
Protein Families
CENP-T_C Histone

Protein Analysis

131

Amino Acids

14.95

Weight (kDa)

10.51

Isoelectric Point (pI)

80.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030029)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0413111
rosa_samantha Rh4DG030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 238
AccBSI CCGCTC 1 cut(s) 18
AccI GTMKAC 1 cut(s) 228
AccII CGCG 1 cut(s) 256
AciI CCGC 3 cut(s) 16, 37, 256
AcsI RAATTY 2 cut(s) 46, 67
AfaI GTAC 2 cut(s) 63, 145
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 3 cut(s) 72, 194, 341
AluBI AGCT 2 cut(s) 134, 234
AluI AGCT 2 cut(s) 134, 234
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 1 cut(s) 380
ApoI RAATTY 2 cut(s) 46, 67
AsuC2I CCSGG 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 243
BanI GGYRCC 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 334
BcnI CCSGG 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 380
BglII AGATCT 1 cut(s) 350
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 52
BmsI GCATC 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 148
BseRI GAGGAG 3 cut(s) 194, 209, 273
BseSI GKGCMC 1 cut(s) 243
BseYI CCCAGC 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 256
BshNI GGYRCC 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 334
BsiSI CCGG 1 cut(s) 52
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 380
BsmBI CGTCTC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 19
Bsp1286I GDGCHC 2 cut(s) 243, 334
Bsp143I GATC 2 cut(s) 208, 350
BspACI CCGC 3 cut(s) 16, 37, 256
BspFNI CGCG 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 240
BspT107I GGYRCC 1 cut(s) 238
BsrBI CCGCTC 1 cut(s) 18
BssMI GATC 2 cut(s) 208, 350
Bst4CI ACNGT 2 cut(s) 31, 143
Bst6I CTCTTC 1 cut(s) 370
BstFNI CGCG 1 cut(s) 256
BstKTI GATC 2 cut(s) 211, 353
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 2 cut(s) 208, 350
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 50
BstSLI GKGCMC 1 cut(s) 243
BstUI CGCG 1 cut(s) 256
BstV2I GAAGAC 1 cut(s) 266
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
BtsIMutI CAGTG 1 cut(s) 334
Csp6I GTAC 2 cut(s) 62, 144
CviJI RGCY 3 cut(s) 134, 164, 234
CviKI_1 RGCY 3 cut(s) 134, 164, 234
CviQI GTAC 2 cut(s) 62, 144
DpnI GATC 2 cut(s) 210, 352
DpnII GATC 2 cut(s) 208, 350
Eam1104I CTCTTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 370
EcoRI GAATTC 1 cut(s) 67
Esp3I CGTCTC 1 cut(s) 380
FaiI YATR 3 cut(s) 77, 126, 156
FaqI GGGAC 1 cut(s) 19
FauI CCCGC 1 cut(s) 44
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 16
Fsp4HI GCNGC 1 cut(s) 16
GluI GCNGC 1 cut(s) 16
GsaI CCCAGC 1 cut(s) 164
HapII CCGG 1 cut(s) 52
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 2 cut(s) 104, 357
HpaII CCGG 1 cut(s) 52
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 1 cut(s) 354
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 2 cut(s) 175, 224
HpyCH4III ACNGT 2 cut(s) 31, 143
HpyCH4IV ACGT 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpySE526I ACGT 1 cut(s) 170
Kzo9I GATC 2 cut(s) 208, 350
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 5 cut(s) 65, 174, 212, 333, 339
LweI GCATC 1 cut(s) 237
MaeII ACGT 1 cut(s) 170
MaeIII GTNAC 1 cut(s) 137
MalI GATC 2 cut(s) 210, 352
MbiI CCGCTC 1 cut(s) 18
MboI GATC 2 cut(s) 208, 350
MboII GAAGA 3 cut(s) 182, 271, 387
MflI RGATCY 1 cut(s) 350
MhlI GDGCHC 2 cut(s) 243, 334
MluCI AATT 2 cut(s) 46, 67
MnlI CCTC 4 cut(s) 172, 230, 294, 315
MseI TTAA 1 cut(s) 381
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 1 cut(s) 52
MvnI CGCG 1 cut(s) 256
MwoI GCNNNNNNNGC 1 cut(s) 247
NciI CCSGG 1 cut(s) 52
NdeII GATC 2 cut(s) 208, 350
NlaIV GGNNCC 1 cut(s) 240
NmuCI GTSAC 1 cut(s) 137
PfeI GAWTC 2 cut(s) 104, 357
PkrI GCNGC 1 cut(s) 17
PspFI CCCAGC 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 240
PsuI RGATCY 1 cut(s) 350
RsaI GTAC 2 cut(s) 63, 145
RsaNI GTAC 2 cut(s) 62, 144
SalI GTCGAC 1 cut(s) 227
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 2 cut(s) 208, 350
ScrFI CCNGG 1 cut(s) 52
SduI GDGCHC 2 cut(s) 243, 334
SetI ASST 5 cut(s) 136, 173, 236, 266, 302
SfaNI GCATC 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 2 cut(s) 46, 67
SsiI CCGC 3 cut(s) 16, 37, 256
StyD4I CCNGG 1 cut(s) 50
TaaI ACNGT 2 cut(s) 31, 143
TaiI ACGT 1 cut(s) 173
TaqI TCGA 2 cut(s) 20, 228
TasI AATT 2 cut(s) 46, 67
TatI WGTACW 1 cut(s) 61
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 2 cut(s) 104, 357
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 39
TspRI CASTG 1 cut(s) 334
XapI RAATTY 2 cut(s) 46, 67
XmiI GTMKAC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.