nucleosomal DNA binding
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0413111 |
| rosa_samantha | Rh4DG030900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 18 |
| AccI | GTMKAC | 1 cut(s) | 228 |
| AccII | CGCG | 1 cut(s) | 247 |
| AciI | CCGC | 3 cut(s) | 16, 37, 247 |
| AcsI | RAATTY | 2 cut(s) | 46, 67 |
| AfaI | GTAC | 2 cut(s) | 63, 145 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 148 |
| AgsI | TTSAA | 3 cut(s) | 72, 194, 332 |
| AluBI | AGCT | 2 cut(s) | 134, 234 |
| AluI | AGCT | 2 cut(s) | 134, 234 |
| Alw21I | GWGCWC | 1 cut(s) | 325 |
| Alw26I | GTCTC | 1 cut(s) | 371 |
| ApoI | RAATTY | 2 cut(s) | 46, 67 |
| AsuC2I | CCSGG | 1 cut(s) | 52 |
| AsuHPI | GGTGA | 2 cut(s) | 131, 160 |
| BbsI | GAAGAC | 1 cut(s) | 257 |
| Bbv12I | GWGCWC | 1 cut(s) | 325 |
| BceAI | ACGGC | 1 cut(s) | 209 |
| BcnI | CCSGG | 1 cut(s) | 52 |
| BcoDI | GTCTC | 1 cut(s) | 371 |
| BisI | GCNGC | 1 cut(s) | 16 |
| BlsI | GCNGC | 1 cut(s) | 17 |
| Bme1390I | CCNGG | 1 cut(s) | 52 |
| BmrFI | CCNGG | 1 cut(s) | 52 |
| BmsI | GCATC | 1 cut(s) | 228 |
| BpiI | GAAGAC | 1 cut(s) | 257 |
| BpuEI | CTTGAG | 1 cut(s) | 197 |
| BpuMI | CCSGG | 1 cut(s) | 52 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 280, 310 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 148 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 148 |
| BseRI | GAGGAG | 3 cut(s) | 194, 209, 264 |
| BseYI | CCCAGC | 1 cut(s) | 160 |
| Bsh1236I | CGCG | 1 cut(s) | 247 |
| BsiHKAI | GWGCWC | 1 cut(s) | 325 |
| BsiSI | CCGG | 1 cut(s) | 52 |
| BslFI | GGGAC | 1 cut(s) | 19 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 148 |
| BsmAI | GTCTC | 1 cut(s) | 371 |
| BsmBI | CGTCTC | 1 cut(s) | 371 |
| BsmFI | GGGAC | 1 cut(s) | 19 |
| Bsp1286I | GDGCHC | 1 cut(s) | 325 |
| Bsp143I | GATC | 1 cut(s) | 208 |
| BspACI | CCGC | 3 cut(s) | 16, 37, 247 |
| BspFNI | CGCG | 1 cut(s) | 247 |
| BsrBI | CCGCTC | 1 cut(s) | 18 |
| BssMI | GATC | 1 cut(s) | 208 |
| Bst4CI | ACNGT | 2 cut(s) | 31, 143 |
| Bst6I | CTCTTC | 1 cut(s) | 361 |
| BstFNI | CGCG | 1 cut(s) | 247 |
| BstKTI | GATC | 1 cut(s) | 211 |
| BstMAI | GTCTC | 1 cut(s) | 371 |
| BstMBI | GATC | 1 cut(s) | 208 |
| BstSCI | CCNGG | 1 cut(s) | 50 |
| BstUI | CGCG | 1 cut(s) | 247 |
| BstV2I | GAAGAC | 1 cut(s) | 257 |
| BtsIMutI | CAGTG | 1 cut(s) | 325 |
| Csp6I | GTAC | 2 cut(s) | 62, 144 |
| CviJI | RGCY | 3 cut(s) | 134, 164, 234 |
| CviKI_1 | RGCY | 3 cut(s) | 134, 164, 234 |
| CviQI | GTAC | 2 cut(s) | 62, 144 |
| DpnI | GATC | 1 cut(s) | 210 |
| DpnII | GATC | 1 cut(s) | 208 |
| Eam1104I | CTCTTC | 1 cut(s) | 361 |
| EarI | CTCTTC | 1 cut(s) | 361 |
| EcoRI | GAATTC | 1 cut(s) | 67 |
| Esp3I | CGTCTC | 1 cut(s) | 371 |
| FaiI | YATR | 3 cut(s) | 77, 126, 156 |
| FaqI | GGGAC | 1 cut(s) | 19 |
| FauI | CCCGC | 1 cut(s) | 44 |
| FblI | GTMKAC | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 16 |
| Fsp4HI | GCNGC | 1 cut(s) | 16 |
| GluI | GCNGC | 1 cut(s) | 16 |
| GsaI | CCCAGC | 1 cut(s) | 164 |
| HapII | CCGG | 1 cut(s) | 52 |
| HincII | GTYRAC | 1 cut(s) | 229 |
| HindII | GTYRAC | 1 cut(s) | 229 |
| HinfI | GANTC | 2 cut(s) | 104, 348 |
| HpaII | CCGG | 1 cut(s) | 52 |
| HphI | GGTGA | 2 cut(s) | 131, 160 |
| Hpy166II | GTNNAC | 1 cut(s) | 229 |
| Hpy188I | TCNGA | 1 cut(s) | 208 |
| Hpy188III | TCNNGA | 1 cut(s) | 345 |
| Hpy8I | GTNNAC | 1 cut(s) | 229 |
| Hpy99I | CGWCG | 1 cut(s) | 230 |
| HpyAV | CCTTC | 3 cut(s) | 175, 181, 224 |
| HpyCH4III | ACNGT | 2 cut(s) | 31, 143 |
| HpyCH4V | TGCA | 1 cut(s) | 83 |
| Kzo9I | GATC | 1 cut(s) | 208 |
| LmnI | GCTCC | 1 cut(s) | 277 |
| LpnPI | CCDG | 5 cut(s) | 65, 174, 212, 324, 330 |
| LweI | GCATC | 1 cut(s) | 228 |
| MaeIII | GTNAC | 1 cut(s) | 137 |
| MalI | GATC | 1 cut(s) | 210 |
| MbiI | CCGCTC | 1 cut(s) | 18 |
| MboI | GATC | 1 cut(s) | 208 |
| MboII | GAAGA | 3 cut(s) | 182, 262, 378 |
| MhlI | GDGCHC | 1 cut(s) | 325 |
| MluCI | AATT | 3 cut(s) | 46, 67, 78 |
| MnlI | CCTC | 4 cut(s) | 172, 230, 285, 306 |
| MseI | TTAA | 1 cut(s) | 372 |
| MspI | CCGG | 1 cut(s) | 52 |
| MspR9I | CCNGG | 1 cut(s) | 52 |
| MvnI | CGCG | 1 cut(s) | 247 |
| NciI | CCSGG | 1 cut(s) | 52 |
| NdeII | GATC | 1 cut(s) | 208 |
| NmuCI | GTSAC | 1 cut(s) | 137 |
| PfeI | GAWTC | 2 cut(s) | 104, 348 |
| PkrI | GCNGC | 1 cut(s) | 17 |
| PspFI | CCCAGC | 1 cut(s) | 160 |
| RsaI | GTAC | 2 cut(s) | 63, 145 |
| RsaNI | GTAC | 2 cut(s) | 62, 144 |
| SalI | GTCGAC | 1 cut(s) | 227 |
| SaqAI | TTAA | 1 cut(s) | 372 |
| SatI | GCNGC | 1 cut(s) | 16 |
| Sau3AI | GATC | 1 cut(s) | 208 |
| ScrFI | CCNGG | 1 cut(s) | 52 |
| SduI | GDGCHC | 1 cut(s) | 325 |
| SetI | ASST | 5 cut(s) | 136, 173, 236, 257, 293 |
| SfaNI | GCATC | 1 cut(s) | 228 |
| SmlI | CTYRAG | 1 cut(s) | 176 |
| SmoI | CTYRAG | 1 cut(s) | 176 |
| Sse9I | AATT | 3 cut(s) | 46, 67, 78 |
| SsiI | CCGC | 3 cut(s) | 16, 37, 247 |
| StyD4I | CCNGG | 1 cut(s) | 50 |
| TaaI | ACNGT | 2 cut(s) | 31, 143 |
| TaqI | TCGA | 3 cut(s) | 20, 228, 364 |
| TasI | AATT | 3 cut(s) | 46, 67, 78 |
| TatI | WGTACW | 1 cut(s) | 61 |
| TauI | GCSGC | 1 cut(s) | 18 |
| TfiI | GAWTC | 2 cut(s) | 104, 348 |
| Tru1I | TTAA | 1 cut(s) | 372 |
| Tru9I | TTAA | 1 cut(s) | 372 |
| TscAI | CASTG | 1 cut(s) | 325 |
| TseFI | GTSAC | 1 cut(s) | 137 |
| Tsp45I | GTSAC | 1 cut(s) | 137 |
| TspDTI | ATGAA | 1 cut(s) | 39 |
| TspRI | CASTG | 1 cut(s) | 325 |
| XapI | RAATTY | 2 cut(s) | 46, 67 |
| XmiI | GTMKAC | 1 cut(s) | 228 |