RchiOBHm_Chr4g0413401

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0024950
Physical Location & Seq
Reverse (-)
37614379 .. 37614954
576 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38393

Sequence Viewer

Length: 576 bp
ATGGGGAAACCAGTCGCCGGAAAGTGCTCTCAAGAAATCTGGTTTGGTATTCTCATCTCCTCTATATTTTGTTTTCTGTTGCTTCGTTGTGATTATTCAACTAGTTTTCCGGGTGTCAACAATGGAGCCATTCTCTTTGTGAATACACAAATTCAACCAATTGGTATTCCCAAAAACAAGACCATTTCTGAAGCTAAGCAATCTACCACATATTCATGCTTTGGTCGTTACATATATATCCAGGGTGATCTTCCTGACAAATTCAGCAAGGACTTCCTCGACAATTGTAAGTCTCTAACTCAAGGGAGTGACAAGCACAACATGTGTCCATACTTGGAGAATTTCGGTTTTGGTCCAGAAATAAACAACTCTGAAGGGGCTTTAGCCAACGAAAGTTGGTACTCCACAAAACAGTTCTCATTAGATGTCATATTCCACAACAAGATGAAGCAGTATGAATGCTTGACAAACAACTCCACTCTGGCTTCGGCCATTTATATACGATTTATGCTGGCCTCAAGGACAATCTCCATTTGTGGGATCCCAACCTCACTGCAAGAGACTCTTTCAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

191

Amino Acids

21.34

Weight (kDa)

7.5

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 75 - 169 1.4e-10 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024950)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0413401
rosa_roxburghii Rroxscaffold_5G00357310
rosa_rugosa Rorug04G0120500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 535, 548
AcoI YGGCCR 1 cut(s) 489
AcsI RAATTY 3 cut(s) 150, 260, 340
AcuI CTGAAG 2 cut(s) 210, 393
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 2 cut(s) 17, 537
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 2 cut(s) 99, 155
AhlI ACTAGT 1 cut(s) 101
AjnI CCWGG 1 cut(s) 240
AjuI GAANNNNNNNTTGG 2 cut(s) 27, 59
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 2 cut(s) 297, 554
AlwI GGATC 2 cut(s) 535, 548
AoxI GGCC 2 cut(s) 489, 513
ApoI RAATTY 3 cut(s) 150, 260, 340
AspS9I GGNCC 1 cut(s) 353
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 257
AvaII GGWCC 1 cut(s) 353
BamHI GGATCC 1 cut(s) 540
Bbv12I GWGCWC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 242
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 2 cut(s) 297, 554
BcuI ACTAGT 1 cut(s) 101
BfaI CTAG 1 cut(s) 102
BlpI GCTNAGC 1 cut(s) 195
Bme1390I CCNGG 2 cut(s) 111, 242
Bme18I GGWCC 1 cut(s) 353
BmgT120I GGNCC 1 cut(s) 353
BmiI GGNNCC 2 cut(s) 127, 542
BmrFI CCNGG 2 cut(s) 111, 242
BplI GAGNNNNNCTC 2 cut(s) 117, 149
Bpu1102I GCTNAGC 1 cut(s) 195
BpuEI CTTGAG 3 cut(s) 15, 285, 502
BpuMI CCSGG 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 537
Bse1I ACTGG 1 cut(s) 11
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 241
BseLI CCNNNNNNNGG 2 cut(s) 17, 537
BseNI ACTGG 1 cut(s) 11
BseRI GAGGAG 1 cut(s) 49
BshFI GGCC 2 cut(s) 491, 515
BsiHKAI GWGCWC 1 cut(s) 29
BsiSI CCGG 2 cut(s) 18, 110
BslI CCNNNNNNNGG 2 cut(s) 17, 537
BsmAI GTCTC 2 cut(s) 297, 554
BsmI GAATGC 1 cut(s) 464
BsnI GGCC 2 cut(s) 491, 515
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 2 cut(s) 247, 540
Bsp1720I GCTNAGC 1 cut(s) 195
BspANI GGCC 2 cut(s) 491, 515
BspLI GGNNCC 2 cut(s) 127, 542
BspPI GGATC 2 cut(s) 535, 548
BsrI ACTGG 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 2 cut(s) 247, 540
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 414
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 1 cut(s) 195
BstKTI GATC 2 cut(s) 250, 543
BstMAI GTCTC 2 cut(s) 297, 554
BstMBI GATC 2 cut(s) 247, 540
BstNI CCWGG 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 2 cut(s) 109, 240
BstX2I RGATCY 1 cut(s) 540
BstYI RGATCY 1 cut(s) 540
BsuRI GGCC 2 cut(s) 491, 515
BtsI GCAGTG 1 cut(s) 551
BtsIMutI CAGTG 1 cut(s) 551
Cac8I GCNNGC 1 cut(s) 513
Cfr13I GGNCC 1 cut(s) 353
Csp6I GTAC 1 cut(s) 400
CviAII CATG 2 cut(s) 216, 322
CviJI RGCY 7 cut(s) 128, 194, 380, 386, 485, 491, 515
CviKI_1 RGCY 7 cut(s) 128, 194, 380, 386, 485, 491, 515
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 1 cut(s) 195
DpnI GATC 2 cut(s) 249, 542
DpnII GATC 2 cut(s) 247, 540
EaeI YGGCCR 1 cut(s) 489
Eco47I GGWCC 1 cut(s) 353
Eco57I CTGAAG 2 cut(s) 210, 393
EcoRII CCWGG 1 cut(s) 240
FaeI CATG 2 cut(s) 219, 325
FalI AAGNNNNNCTT 1 cut(s) 549
FatI CATG 2 cut(s) 215, 321
FspBI CTAG 1 cut(s) 102
HaeIII GGCC 2 cut(s) 491, 515
HapII CCGG 2 cut(s) 18, 110
Hin1II CATG 2 cut(s) 219, 325
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 1 cut(s) 562
HpaII CCGG 2 cut(s) 18, 110
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 190, 373
Hpy188III TCNNGA 3 cut(s) 32, 254, 356
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 1 cut(s) 368
HpyCH4III ACNGT 1 cut(s) 414
HpyCH4V TGCA 1 cut(s) 556
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 2 cut(s) 219, 325
Kzo9I GATC 2 cut(s) 247, 540
LmnI GCTCC 1 cut(s) 125
MaeI CTAG 1 cut(s) 102
MaeIII GTNAC 2 cut(s) 227, 308
MalI GATC 2 cut(s) 249, 542
MboI GATC 2 cut(s) 247, 540
MboII GAAGA 1 cut(s) 242
MfeI CAATTG 2 cut(s) 159, 283
MflI RGATCY 1 cut(s) 540
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 5 cut(s) 150, 159, 260, 283, 340
MlyI GAGTC 1 cut(s) 556
MnlI CCTC 4 cut(s) 70, 287, 526, 559
MslI CAYNNNNRTG 1 cut(s) 214
MspI CCGG 2 cut(s) 18, 110
MspR9I CCNGG 2 cut(s) 111, 242
MunI CAATTG 2 cut(s) 159, 283
Mva1269I GAATGC 1 cut(s) 464
MvaI CCWGG 1 cut(s) 242
NciI CCSGG 1 cut(s) 111
NdeII GATC 2 cut(s) 247, 540
NlaIII CATG 2 cut(s) 219, 325
NlaIV GGNNCC 2 cut(s) 127, 542
NmuCI GTSAC 1 cut(s) 308
NspI RCATGY 1 cut(s) 325
PciI ACATGT 1 cut(s) 321
PctI GAATGC 1 cut(s) 464
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
PscI ACATGT 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 127, 542
PspPI GGNCC 1 cut(s) 353
PsuI RGATCY 1 cut(s) 540
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
RseI CAYNNNNRTG 1 cut(s) 214
Sau3AI GATC 2 cut(s) 247, 540
Sau96I GGNCC 1 cut(s) 353
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 2 cut(s) 111, 242
SduI GDGCHC 1 cut(s) 29
SetI ASST 2 cut(s) 196, 551
SinI GGWCC 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 214
SmlI CTYRAG 3 cut(s) 30, 300, 517
SmoI CTYRAG 3 cut(s) 30, 300, 517
SpeI ACTAGT 1 cut(s) 101
Sse9I AATT 5 cut(s) 150, 159, 260, 283, 340
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 2 cut(s) 109, 240
TaaI ACNGT 1 cut(s) 414
TaqI TCGA 1 cut(s) 279
TasI AATT 5 cut(s) 150, 159, 260, 283, 340
TscAI CASTG 1 cut(s) 558
TseFI GTSAC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 3 cut(s) 204, 461, 471
TspRI CASTG 1 cut(s) 558
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 3 cut(s) 150, 260, 340
XceI RCATGY 1 cut(s) 325
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.