Rorug04G0120500

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000614
Physical Location & Seq
Forward (+)
19116630 .. 19134377
17748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0120500.1

Sequence Viewer

Length: 867 bp
ATGGCTTCTTCAACATCAATGCTTCTGTTCGTTCCATTTATGCTAATTAGCTCTGTTATGGTTGCCTCTGCTGGTAACTTCAACCAAGACTTTAAGATTACATGGGGAGACGGTCGAGCCAACATACTCAACGACGGCCAACTTCTTACTCTCTCACTCGACAAAGCCTCTGGCTCTGGTTTCGAATCCAAAAACGAATACCTCTTCGGCAAGATTGACATGCAGCTCAAGCTTGTCGCCGGAAACTCTGCCGGCACAGTCACAGCTTACTATTTAAAATCAGAAGGGTCTACATGGGATGAGATAGACTTTGAGTTCTTGGGAAACCTGAGTGGCAACCCTTACACTCTTCACACAAATGTCTTCAGCCAAGGCAAGGGAAACAGAGAACAGCAATTCCATCTCTGGTTCGATCCAACTGCTGATTTCCACACCTATTCCATTCTCTGGAATCCACAGCGCATTGTTTTCTCTGTTGATGGTACTCCCATTAGAGAGTTCAAGAACCAAGAATCAAATGGTGTTCCATTCCCAAAGAGCCAAGCAATGAGAATACACTCGAGCCTCTGGAATGCTGATGATTGGGCAACAATGGGAGGACGCGTAAAGACGGATTGGAATGCAGCTCCGTTCACTGCCTCTTACAGGAATTTCAATGCTGAAGCTTGCATTTGGGCTTCTGGATCATCTTCTTGCGGTTCAAGCAGTGCCCCTGCTTCGACTAATGGAGATTGGCTTTCGCAAGAATTGGACACTGCTAGTTATGAAAAGCTGAGTTGGGTGCAGAAAAACTACATGATCTACAATTACTGCACAGATGTCAACAGATTTCCTCCGGGCCTCCCAGTTGAATGCAGCACTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

288

Amino Acids

31.96

Weight (kDa)

4.99

Isoelectric Point (pI)

30.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 27 - 207 1.1e-67 Glycosyl hydrolases family 16
XET_C PF06955 241 - 285 2.2e-18 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 447
AccI GTMKAC 1 cut(s) 290
AccII CGCG 1 cut(s) 603
AciI CCGC 1 cut(s) 696
AclWI GGATC 2 cut(s) 407, 691
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 1 cut(s) 649
AcuI CTGAAG 2 cut(s) 349, 681
AfaI GTAC 1 cut(s) 484
AfiI CCNNNNNNNGG 3 cut(s) 376, 447, 645
AflIII ACRYGT 1 cut(s) 601
AgsI TTSAA 6 cut(s) 12, 82, 502, 655, 702, 851
AloI GAACNNNNNNTCC 2 cut(s) 381, 413
AluBI AGCT 7 cut(s) 51, 226, 232, 266, 626, 665, 772
AluI AGCT 7 cut(s) 51, 226, 232, 266, 626, 665, 772
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 2 cut(s) 407, 691
Ama87I CYCGRG 1 cut(s) 559
AoxI GGCC 2 cut(s) 136, 838
ApeKI GCWGC 3 cut(s) 223, 623, 855
ApoI RAATTY 1 cut(s) 649
AspLEI GCGC 1 cut(s) 462
AspS9I GGNCC 1 cut(s) 838
AsuC2I CCSGG 1 cut(s) 837
AsuII TTCGAA 1 cut(s) 183
AvaI CYCGRG 1 cut(s) 559
BaeGI GKGCMC 1 cut(s) 712
BbsI GAAGAC 1 cut(s) 355
BbvI GCAGC 2 cut(s) 235, 635
BccI CCATC 2 cut(s) 408, 473
BceAI ACGGC 1 cut(s) 151
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BcnI CCSGG 1 cut(s) 837
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 1 cut(s) 759
BisI GCNGC 3 cut(s) 224, 624, 856
BlsI GCNGC 3 cut(s) 225, 625, 857
Bme1390I CCNGG 1 cut(s) 837
BmeT110I CYCGRG 1 cut(s) 559
BmgT120I GGNCC 1 cut(s) 838
BmrFI CCNGG 1 cut(s) 837
BmrI ACTGGG 1 cut(s) 839
BmuI ACTGGG 1 cut(s) 839
BpiI GAAGAC 1 cut(s) 355
Bpu14I TTCGAA 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 837
BsaJI CCNNGG 1 cut(s) 370
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bsc4I CCNNNNNNNGG 3 cut(s) 376, 447, 645
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 845
Bse3DI GCAATG 1 cut(s) 552
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 3 cut(s) 376, 447, 645
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 2 cut(s) 320, 764
BseNI ACTGG 1 cut(s) 845
BseSI GKGCMC 1 cut(s) 712
BseXI GCAGC 2 cut(s) 235, 635
BsgI GTGCAG 2 cut(s) 796, 803
Bsh1236I CGCG 1 cut(s) 603
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 2 cut(s) 138, 840
BsiEI CGRYCG 1 cut(s) 115
BsiHKCI CYCGRG 1 cut(s) 559
BsiSI CCGG 3 cut(s) 240, 252, 836
BslI CCNNNNNNNGG 3 cut(s) 376, 447, 645
BsmAI GTCTC 1 cut(s) 102
BsmBI CGTCTC 1 cut(s) 102
BsmI GAATGC 3 cut(s) 577, 625, 857
BsnI GGCC 2 cut(s) 138, 840
BsoBI CYCGRG 1 cut(s) 559
Bsp119I TTCGAA 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 712
Bsp143I GATC 3 cut(s) 412, 683, 798
BspACI CCGC 1 cut(s) 696
BspANI GGCC 2 cut(s) 138, 840
BspCNI CTCAG 2 cut(s) 321, 765
BspFNI CGCG 1 cut(s) 603
BspPI GGATC 2 cut(s) 407, 691
BspT104I TTCGAA 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 552
BsrFI RCCGGY 1 cut(s) 251
BsrI ACTGG 1 cut(s) 845
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 3 cut(s) 412, 683, 798
BssT1I CCWWGG 1 cut(s) 370
Bst4CI ACNGT 2 cut(s) 113, 259
Bst6I CTCTTC 2 cut(s) 209, 354
BstBI TTCGAA 1 cut(s) 183
BstC8I GCNNGC 2 cut(s) 253, 667
BstDEI CTNAG 2 cut(s) 329, 773
BstENI CCTNNNNNAGG 1 cut(s) 643
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 603
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 3 cut(s) 415, 686, 801
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 3 cut(s) 412, 683, 798
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 2 cut(s) 229, 702
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 835
BstSLI GKGCMC 1 cut(s) 712
BstUI CGCG 1 cut(s) 603
BstV1I GCAGC 2 cut(s) 235, 635
BstV2I GAAGAC 1 cut(s) 355
BsuRI GGCC 2 cut(s) 138, 840
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 3 cut(s) 633, 712, 753
BtsIMutI CAGTG 3 cut(s) 633, 712, 753
Cac8I GCNNGC 2 cut(s) 253, 667
CfoI GCGC 1 cut(s) 462
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 838
CseI GACGC 1 cut(s) 609
Csp6I GTAC 1 cut(s) 483
CviAII CATG 4 cut(s) 102, 220, 294, 796
CviQI GTAC 1 cut(s) 483
DdeI CTNAG 2 cut(s) 329, 773
DpnI GATC 3 cut(s) 414, 685, 800
DpnII GATC 3 cut(s) 412, 683, 798
DraI TTTAAA 1 cut(s) 276
EaeI YGGCCR 1 cut(s) 136
Eam1104I CTCTTC 2 cut(s) 209, 354
EarI CTCTTC 2 cut(s) 209, 354
Eco130I CCWWGG 1 cut(s) 370
Eco57I CTGAAG 2 cut(s) 349, 681
Eco88I CYCGRG 1 cut(s) 559
EcoNI CCTNNNNNAGG 1 cut(s) 643
EcoT14I CCWWGG 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 370
Esp3I CGTCTC 1 cut(s) 102
FaeI CATG 4 cut(s) 105, 223, 297, 799
FaiI YATR 9 cut(s) 41, 59, 103, 125, 221, 295, 765, 797, 865
FatI CATG 4 cut(s) 101, 219, 293, 795
FblI GTMKAC 1 cut(s) 290
Fnu4HI GCNGC 3 cut(s) 224, 624, 856
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 3 cut(s) 224, 624, 856
FspBI CTAG 1 cut(s) 759
GlaI GCGC 1 cut(s) 461
GluI GCNGC 3 cut(s) 224, 624, 856
HaeIII GGCC 2 cut(s) 138, 840
HapII CCGG 3 cut(s) 240, 252, 836
HgaI GACGC 1 cut(s) 609
HhaI GCGC 1 cut(s) 462
Hin1II CATG 4 cut(s) 105, 223, 297, 799
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HincII GTYRAC 1 cut(s) 823
HindII GTYRAC 1 cut(s) 823
HindIII AAGCTT 2 cut(s) 230, 663
HinfI GANTC 3 cut(s) 185, 451, 512
HpaII CCGG 3 cut(s) 240, 252, 836
Hpy166II GTNNAC 3 cut(s) 291, 633, 823
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 4 cut(s) 448, 502, 568, 681
Hpy8I GTNNAC 3 cut(s) 291, 633, 823
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 2 cut(s) 113, 259
HpyCH4V TGCA 6 cut(s) 223, 623, 669, 784, 813, 855
HpyF10VI GCNNNNNNNGC 2 cut(s) 229, 702
HpyF3I CTNAG 2 cut(s) 329, 773
Hsp92II CATG 4 cut(s) 105, 223, 297, 799
HspAI GCGC 1 cut(s) 460
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Kzo9I GATC 3 cut(s) 412, 683, 798
LmnI GCTCC 1 cut(s) 631
Lsp1109I GCAGC 2 cut(s) 235, 635
MaeI CTAG 1 cut(s) 759
MaeIII GTNAC 2 cut(s) 74, 259
MalI GATC 3 cut(s) 414, 685, 800
MboI GATC 3 cut(s) 412, 683, 798
MboII GAAGA 4 cut(s) 196, 341, 355, 681
MhlI GDGCHC 1 cut(s) 712
MluCI AATT 5 cut(s) 45, 395, 649, 746, 805
MluI ACGCGT 1 cut(s) 601
MmeI TCCRAC 1 cut(s) 440
MnlI CCTC 8 cut(s) 76, 178, 212, 575, 590, 649, 843, 851
MroNI GCCGGC 1 cut(s) 251
MseI TTAA 2 cut(s) 93, 275
MslI CAYNNNNRTG 1 cut(s) 357
MspI CCGG 3 cut(s) 240, 252, 836
MspR9I CCNGG 1 cut(s) 837
Mva1269I GAATGC 3 cut(s) 577, 625, 857
MvnI CGCG 1 cut(s) 603
MwoI GCNNNNNNNGC 2 cut(s) 229, 702
NaeI GCCGGC 1 cut(s) 253
NciI CCSGG 1 cut(s) 837
NdeII GATC 3 cut(s) 412, 683, 798
NgoMIV GCCGGC 1 cut(s) 251
NlaIII CATG 4 cut(s) 105, 223, 297, 799
NmuCI GTSAC 1 cut(s) 259
NspI RCATGY 1 cut(s) 223
NspV TTCGAA 1 cut(s) 183
PaeR7I CTCGAG 1 cut(s) 559
PctI GAATGC 3 cut(s) 577, 625, 857
PdiI GCCGGC 1 cut(s) 253
PfeI GAWTC 3 cut(s) 185, 451, 512
PflMI CCANNNNNTGG 1 cut(s) 447
PkrI GCNGC 3 cut(s) 225, 625, 857
PspPI GGNCC 1 cut(s) 838
PspXI VCTCGAGB 1 cut(s) 559
RsaI GTAC 1 cut(s) 484
RsaNI GTAC 1 cut(s) 483
RseI CAYNNNNRTG 1 cut(s) 357
SaqAI TTAA 2 cut(s) 93, 275
SatI GCNGC 3 cut(s) 224, 624, 856
Sau3AI GATC 3 cut(s) 412, 683, 798
Sau96I GGNCC 1 cut(s) 838
ScrFI CCNGG 1 cut(s) 837
SduI GDGCHC 1 cut(s) 712
Sfr274I CTCGAG 1 cut(s) 559
SfuI TTCGAA 1 cut(s) 183
SlaI CTCGAG 1 cut(s) 559
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 2 cut(s) 227, 559
SmoI CTYRAG 2 cut(s) 227, 559
Sse9I AATT 5 cut(s) 45, 395, 649, 746, 805
SsiI CCGC 1 cut(s) 696
SspMI CTAG 1 cut(s) 759
StyD4I CCNGG 1 cut(s) 835
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 2 cut(s) 113, 259
TaqI TCGA 6 cut(s) 115, 159, 183, 411, 560, 719
TasI AATT 5 cut(s) 45, 395, 649, 746, 805
TfiI GAWTC 3 cut(s) 185, 451, 512
Tru1I TTAA 2 cut(s) 93, 275
Tru9I TTAA 2 cut(s) 93, 275
TscAI CASTG 3 cut(s) 640, 712, 760
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 3 cut(s) 223, 623, 855
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 2 cut(s) 780, 852
TspGWI ACGGA 2 cut(s) 618, 626
TspRI CASTG 3 cut(s) 640, 712, 760
Van91I CCANNNNNTGG 1 cut(s) 447
XagI CCTNNNNNAGG 1 cut(s) 643
XapI RAATTY 1 cut(s) 649
XceI RCATGY 1 cut(s) 223
XcmI CCANNNNNNNNNTGG 1 cut(s) 515
XhoI CTCGAG 1 cut(s) 559
XmiI GTMKAC 1 cut(s) 290
XspI CTAG 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.