pycom16g02710

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000614
Physical Location & Seq
Reverse (-)
1751559 .. 1752590
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g02710.1

Sequence Viewer

Length: 1032 bp
ATGGAGGCGCCGCTTCTCGTCTCCCTCATCCTCCTCTCTCTCCTCTCTTTCTCATCCGCCCTCCCCGCCCAGGCCATCCAAGATGCCGTCGAAATCCTCTCCGATTCCGGCTACGTCTCCATGGCGCTGACACTTGAGCTCGTATCCCAGTCCCTCGTGCCGCAGTCCCCCTCCCTCACCATCTTCACTCCGCCGGACACCGCCTTCACCAAATTGGGTCAACCCGCCCTCTCTCTGCTCCAATACCACTTCTGCCCTCTTCCCCTGCCCCTCCAAACCCTCAAATCCCTCCCCTCTGGCAGTAAGATCCCGACTTTACTCTCTGGACAATCCCTCTTCGTCACCACGCCGCCCTCCGGCACCCCAATTTCGCTCAACAATGTCAAGATCACTTCCGGGTCGCCCATTTATGACGACGGGTTCCTAATCATTTTCGGAATCGATAACTTCTTCGACCTCAATTTTCATCTCCCGATACCGACTCGGATCCCCGTCCCAGATCCGGTTTGTGGGTCTTCTTCCCCGCCGTCATCCGCCAACGGCACAACTGCAATTAGGTTTCCCGGAGCTTCCCGGTTCGAAGAAGCGAGTGAAATGCTGAGGTCCAATGGCTACAATGTCATGGCGTCGTTCCTCAACTTGCAACTTCTGGGTTTCAAGAACGCGACTCCAATGACCGTGTTCGCTCCTCTCGACCAAGCGATGGACAACCCACTGCAAGAACCCTCGATCTTTCTGCGACACGTCGTTCCGTGCCGGCTGATGTGGAGCGATTTGGCGGGTTTCACAGACGGCGTTGTACTTCCGACGTACATGCAGGATTTTGCCATCACCATCTCGAGGAACGGCAACGTTTTGCTGCTGAATGGAGTTCCAGTCTTCTTCGCCAACATGTATTACGGCGACACCTTCGTCGTTCACGGCCTCCGCGAGACTCTTGCGATGCCGGAGACGCCGGAATCTGCCGATGAGTCTTCGCCGGGAAGTGGAAGAACCGACGATGAGGTGCCTTTTGATAATACTGAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

344

Amino Acids

36.95

Weight (kDa)

4.37

Isoelectric Point (pI)

53.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 911
AccB1I GGYRCC 3 cut(s) 7, 359, 1006
AccB7I CCANNNNNTGG 1 cut(s) 703
AccII CGCG 2 cut(s) 665, 930
AclI AACGTT 1 cut(s) 852
AclWI GGATC 4 cut(s) 301, 481, 494, 494
AcyI GRCGYC 3 cut(s) 8, 626, 953
AfaI GTAC 2 cut(s) 801, 812
AfiI CCNNNNNNNGG 7 cut(s) 70, 356, 502, 509, 703, 840, 986
AflIII ACRYGT 2 cut(s) 742, 891
AgsI TTSAA 1 cut(s) 658
AjiI CACGTC 1 cut(s) 745
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 2 cut(s) 139, 569
AluI AGCT 2 cut(s) 139, 569
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 4 cut(s) 25, 121, 926, 944
AlwI GGATC 4 cut(s) 301, 481, 494, 494
Ama87I CYCGRG 1 cut(s) 838
AoxI GGCC 2 cut(s) 72, 922
ApeKI GCWGC 1 cut(s) 859
AspLEI GCGC 2 cut(s) 10, 127
AspS9I GGNCC 1 cut(s) 603
AsuC2I CCSGG 4 cut(s) 397, 564, 574, 981
AsuHPI GGTGA 4 cut(s) 169, 199, 334, 823
AsuII TTCGAA 1 cut(s) 579
AvaI CYCGRG 1 cut(s) 838
AvaII GGWCC 1 cut(s) 603
BamHI GGATCC 1 cut(s) 486
BanI GGYRCC 3 cut(s) 7, 359, 1006
BanII GRGCYC 1 cut(s) 141
BauI CACGAG 1 cut(s) 155
BbsI GAAGAC 3 cut(s) 507, 871, 966
Bbv12I GWGCWC 1 cut(s) 141
BbvCI CCTCAGC 1 cut(s) 599
BbvI GCAGC 1 cut(s) 846
BccI CCATC 5 cut(s) 83, 188, 697, 836, 842
BceAI ACGGC 7 cut(s) 71, 511, 556, 808, 862, 916, 937
BcgI CGANNNNNNTGC 8 cut(s) 577, 611, 718, 752, 796, 830, 920, 954
BciT130I CCWGG 1 cut(s) 71
BciVI GTATCC 1 cut(s) 154
BcnI CCSGG 4 cut(s) 397, 564, 574, 981
BcoDI GTCTC 4 cut(s) 25, 121, 926, 944
BfoI RGCGCY 2 cut(s) 11, 128
BfuI GTATCC 1 cut(s) 154
BisI GCNGC 4 cut(s) 11, 161, 350, 860
BlsI GCNGC 4 cut(s) 12, 162, 351, 861
Bme1390I CCNGG 5 cut(s) 71, 397, 564, 574, 981
Bme18I GGWCC 1 cut(s) 603
BmeT110I CYCGRG 1 cut(s) 838
BmgBI CACGTC 1 cut(s) 745
BmgT120I GGNCC 1 cut(s) 603
BmiI GGNNCC 5 cut(s) 9, 361, 422, 488, 1008
BmrFI CCNGG 5 cut(s) 71, 397, 564, 574, 981
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 2 cut(s) 73, 933
BmuI ACTGGG 1 cut(s) 142
BpiI GAAGAC 3 cut(s) 507, 871, 966
Bpu10I CCTNAGC 1 cut(s) 599
Bpu14I TTCGAA 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 4 cut(s) 397, 564, 574, 981
Bsa29I ATCGAT 1 cut(s) 441
BsaHI GRCGYC 3 cut(s) 8, 626, 953
BsaJI CCNNGG 2 cut(s) 69, 120
BsaWI WCCGGW 1 cut(s) 502
BsaXI ACNNNNNCTCC 2 cut(s) 861, 891
Bsc4I CCNNNNNNNGG 7 cut(s) 70, 356, 502, 509, 703, 840, 986
Bse118I RCCGGY 1 cut(s) 756
Bse1I ACTGG 2 cut(s) 148, 875
BseBI CCWGG 1 cut(s) 71
BseCI ATCGAT 1 cut(s) 441
BseDI CCNNGG 2 cut(s) 69, 120
BseGI GGATG 4 cut(s) 27, 53, 75, 530
BseLI CCNNNNNNNGG 7 cut(s) 70, 356, 502, 509, 703, 840, 986
BseMII CTCAG 1 cut(s) 590
BseNI ACTGG 2 cut(s) 148, 875
BseRI GAGGAG 3 cut(s) 23, 32, 678
BseXI GCAGC 1 cut(s) 846
Bsh1236I CGCG 2 cut(s) 665, 930
BshFI GGCC 2 cut(s) 74, 924
BshNI GGYRCC 3 cut(s) 7, 359, 1006
BshVI ATCGAT 1 cut(s) 441
BsiHKAI GWGCWC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 838
BslFI GGGAC 3 cut(s) 136, 151, 479
BslI CCNNNNNNNGG 7 cut(s) 70, 356, 502, 509, 703, 840, 986
BsmAI GTCTC 4 cut(s) 25, 121, 926, 944
BsmBI CGTCTC 3 cut(s) 25, 121, 944
BsmFI GGGAC 3 cut(s) 136, 151, 479
BsnI GGCC 2 cut(s) 74, 924
BsoBI CYCGRG 1 cut(s) 838
Bsp119I TTCGAA 1 cut(s) 579
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 5 cut(s) 306, 387, 486, 499, 729
Bsp19I CCATGG 1 cut(s) 120
BspANI GGCC 2 cut(s) 74, 924
BspCNI CTCAG 1 cut(s) 591
BspDI ATCGAT 1 cut(s) 441
BspFNI CGCG 2 cut(s) 665, 930
BspLI GGNNCC 5 cut(s) 9, 361, 422, 488, 1008
BspPI GGATC 4 cut(s) 301, 481, 494, 494
BspT104I TTCGAA 1 cut(s) 579
BspT107I GGYRCC 3 cut(s) 7, 359, 1006
BsrFI RCCGGY 1 cut(s) 756
BsrI ACTGG 2 cut(s) 148, 875
BssAI RCCGGY 1 cut(s) 756
BssECI CCNNGG 2 cut(s) 69, 120
BssMI GATC 5 cut(s) 306, 387, 486, 499, 729
BssNI GRCGYC 3 cut(s) 8, 626, 953
BssSI CACGAG 1 cut(s) 155
BssT1I CCWWGG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 679
Bst6I CTCTTC 2 cut(s) 264, 341
BstACI GRCGYC 3 cut(s) 8, 626, 953
BstBI TTCGAA 1 cut(s) 579
BstC8I GCNNGC 1 cut(s) 758
BstDEI CTNAG 1 cut(s) 599
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 4 cut(s) 27, 53, 75, 530
BstFNI CGCG 2 cut(s) 665, 930
BstH2I RGCGCY 2 cut(s) 11, 128
BstHHI GCGC 2 cut(s) 10, 127
BstKTI GATC 5 cut(s) 309, 390, 489, 502, 732
BstMAI GTCTC 4 cut(s) 25, 121, 926, 944
BstMBI GATC 5 cut(s) 306, 387, 486, 499, 729
BstMWI GCNNNNNNNGC 2 cut(s) 65, 952
BstNI CCWGG 1 cut(s) 71
BstNSI RCATGY 2 cut(s) 817, 895
BstSCI CCNGG 5 cut(s) 69, 395, 562, 572, 979
BstUI CGCG 2 cut(s) 665, 930
BstV1I GCAGC 1 cut(s) 846
BstV2I GAAGAC 3 cut(s) 507, 871, 966
BstX2I RGATCY 3 cut(s) 306, 486, 499
BstYI RGATCY 3 cut(s) 306, 486, 499
Bsu15I ATCGAT 1 cut(s) 441
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 2 cut(s) 74, 924
BsuTUI ATCGAT 1 cut(s) 441
BtgI CCRYGG 1 cut(s) 120
BtgZI GCGATG 2 cut(s) 716, 956
BtrI CACGTC 1 cut(s) 745
BtsCI GGATG 4 cut(s) 27, 53, 75, 530
BtsI GCAGTG 1 cut(s) 713
BtsIMutI CAGTG 1 cut(s) 713
Cac8I GCNNGC 1 cut(s) 758
CfoI GCGC 2 cut(s) 10, 127
Cfr10I RCCGGY 1 cut(s) 756
Cfr13I GGNCC 1 cut(s) 603
ClaI ATCGAT 1 cut(s) 441
CseI GACGC 2 cut(s) 615, 961
Csp6I GTAC 2 cut(s) 800, 811
CviAII CATG 4 cut(s) 121, 622, 814, 892
CviJI RGCY 7 cut(s) 74, 111, 139, 569, 612, 760, 924
CviKI_1 RGCY 7 cut(s) 74, 111, 139, 569, 612, 760, 924
CviQI GTAC 2 cut(s) 800, 811
DdeI CTNAG 1 cut(s) 599
DinI GGCGCC 1 cut(s) 9
DpnI GATC 5 cut(s) 308, 389, 488, 501, 731
DpnII GATC 5 cut(s) 306, 387, 486, 499, 729
DrdI GACNNNNNNGTC 1 cut(s) 911
DseDI GACNNNNNNGTC 1 cut(s) 911
Eam1104I CTCTTC 2 cut(s) 264, 341
EarI CTCTTC 2 cut(s) 264, 341
EciI GGCGGA 3 cut(s) 46, 180, 523
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 603
Eco53kI GAGCTC 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 838
EcoICRI GAGCTC 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 141
EgeI GGCGCC 1 cut(s) 9
EheI GGCGCC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 120
Esp3I CGTCTC 3 cut(s) 25, 121, 944
FaeI CATG 4 cut(s) 124, 625, 817, 895
FaiI YATR 5 cut(s) 122, 411, 623, 815, 893
FaqI GGGAC 3 cut(s) 136, 151, 479
FatI CATG 4 cut(s) 120, 621, 813, 891
FauI CCCGC 4 cut(s) 73, 232, 531, 772
Fnu4HI GCNGC 4 cut(s) 11, 161, 350, 860
FokI GGATG 4 cut(s) 14, 40, 62, 517
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 4 cut(s) 11, 161, 350, 860
GlaI GCGC 2 cut(s) 9, 126
GluI GCNGC 4 cut(s) 11, 161, 350, 860
HaeII RGCGCY 2 cut(s) 11, 128
HaeIII GGCC 2 cut(s) 74, 924
HgaI GACGC 2 cut(s) 615, 961
HhaI GCGC 2 cut(s) 10, 127
Hin1I GRCGYC 3 cut(s) 8, 626, 953
Hin1II CATG 4 cut(s) 124, 625, 817, 895
Hin6I GCGC 2 cut(s) 8, 125
HinP1I GCGC 2 cut(s) 8, 125
HincII GTYRAC 1 cut(s) 221
HindII GTYRAC 1 cut(s) 221
HinfI GANTC 7 cut(s) 104, 438, 481, 667, 934, 959, 971
HphI GGTGA 4 cut(s) 169, 199, 334, 823
Hpy166II GTNNAC 2 cut(s) 221, 919
Hpy188I TCNGA 4 cut(s) 103, 437, 486, 807
Hpy188III TCNNGA 7 cut(s) 310, 324, 385, 472, 658, 692, 838
Hpy8I GTNNAC 2 cut(s) 221, 919
Hpy99I CGWCG 7 cut(s) 92, 419, 631, 749, 811, 917, 1001
HpyAV CCTTC 2 cut(s) 214, 919
HpyCH4III ACNGT 1 cut(s) 679
HpyCH4IV ACGT 4 cut(s) 114, 744, 809, 852
HpyCH4V TGCA 4 cut(s) 551, 643, 718, 817
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 952
HpyF3I CTNAG 1 cut(s) 599
HpySE526I ACGT 4 cut(s) 114, 744, 809, 852
Hsp92I GRCGYC 3 cut(s) 8, 626, 953
Hsp92II CATG 4 cut(s) 124, 625, 817, 895
HspAI GCGC 2 cut(s) 8, 125
KasI GGCGCC 1 cut(s) 7
KroI GCCGGC 1 cut(s) 756
KroNI GCCGGC 1 cut(s) 758
Kzo9I GATC 5 cut(s) 306, 387, 486, 499, 729
LmnI GCTCC 4 cut(s) 243, 566, 691, 768
Lsp1109I GCAGC 1 cut(s) 846
LweI GCATC 2 cut(s) 73, 933
MaeII ACGT 4 cut(s) 114, 744, 809, 852
MaeIII GTNAC 1 cut(s) 340
MalI GATC 5 cut(s) 308, 389, 488, 501, 731
MboI GATC 5 cut(s) 306, 387, 486, 499, 729
MflI RGATCY 3 cut(s) 306, 486, 499
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 5 cut(s) 212, 366, 460, 552, 1025
Mly113I GGCGCC 1 cut(s) 8
MlyI GAGTC 4 cut(s) 475, 661, 928, 980
MmeI TCCRAC 1 cut(s) 830
MroNI GCCGGC 1 cut(s) 756
MspR9I CCNGG 5 cut(s) 71, 397, 564, 574, 981
MvaI CCWGG 1 cut(s) 71
MvnI CGCG 2 cut(s) 665, 930
MwoI GCNNNNNNNGC 2 cut(s) 65, 952
NaeI GCCGGC 1 cut(s) 758
NarI GGCGCC 1 cut(s) 8
NciI CCSGG 4 cut(s) 397, 564, 574, 981
NcoI CCATGG 1 cut(s) 120
NdeII GATC 5 cut(s) 306, 387, 486, 499, 729
NgoMIV GCCGGC 1 cut(s) 756
NlaIII CATG 4 cut(s) 124, 625, 817, 895
NlaIV GGNNCC 5 cut(s) 9, 361, 422, 488, 1008
NmuCI GTSAC 1 cut(s) 340
NspI RCATGY 2 cut(s) 817, 895
NspV TTCGAA 1 cut(s) 579
PaeR7I CTCGAG 1 cut(s) 838
PciI ACATGT 1 cut(s) 891
PcsI WCGNNNNNNNCGW 2 cut(s) 690, 927
PdiI GCCGGC 1 cut(s) 758
PfeI GAWTC 3 cut(s) 104, 438, 959
PflMI CCANNNNNTGG 1 cut(s) 703
PfoI TCCNGGA 1 cut(s) 562
PkrI GCNGC 4 cut(s) 12, 162, 351, 861
PleI GAGTC 4 cut(s) 475, 661, 928, 979
PluTI GGCGCC 1 cut(s) 11
PpsI GAGTC 4 cut(s) 475, 661, 928, 979
PscI ACATGT 1 cut(s) 891
Psp124BI GAGCTC 1 cut(s) 141
Psp1406I AACGTT 1 cut(s) 852
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 5 cut(s) 9, 361, 422, 488, 1008
PspPI GGNCC 1 cut(s) 603
PsuI RGATCY 3 cut(s) 306, 486, 499
RsaI GTAC 2 cut(s) 801, 812
RsaNI GTAC 2 cut(s) 800, 811
SacI GAGCTC 1 cut(s) 141
SatI GCNGC 4 cut(s) 11, 161, 350, 860
Sau3AI GATC 5 cut(s) 306, 387, 486, 499, 729
Sau96I GGNCC 1 cut(s) 603
SchI GAGTC 4 cut(s) 475, 661, 928, 980
ScrFI CCNGG 5 cut(s) 71, 397, 564, 574, 981
SduI GDGCHC 1 cut(s) 141
SfaNI GCATC 2 cut(s) 73, 933
SfoI GGCGCC 1 cut(s) 9
Sfr274I CTCGAG 1 cut(s) 838
SfuI TTCGAA 1 cut(s) 579
SinI GGWCC 1 cut(s) 603
SlaI CTCGAG 1 cut(s) 838
SmlI CTYRAG 2 cut(s) 134, 838
SmoI CTYRAG 2 cut(s) 134, 838
Sse9I AATT 5 cut(s) 212, 366, 460, 552, 1025
SspDI GGCGCC 1 cut(s) 7
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 5 cut(s) 69, 395, 562, 572, 979
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 679
TaiI ACGT 4 cut(s) 117, 747, 812, 855
TaqI TCGA 7 cut(s) 90, 441, 453, 579, 693, 728, 839
TasI AATT 5 cut(s) 212, 366, 460, 552, 1025
TatI WGTACW 1 cut(s) 799
TauI GCSGC 3 cut(s) 13, 163, 352
TfiI GAWTC 3 cut(s) 104, 438, 959
TscAI CASTG 1 cut(s) 720
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 1 cut(s) 859
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 1 cut(s) 455
TspGWI ACGGA 1 cut(s) 741
TspRI CASTG 1 cut(s) 720
Van91I CCANNNNNTGG 1 cut(s) 703
VpaK11BI GGWCC 1 cut(s) 603
XceI RCATGY 2 cut(s) 817, 895
XhoI CTCGAG 1 cut(s) 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.