pycom13g02660

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
1839852 .. 1840883
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g02660.1

Sequence Viewer

Length: 1032 bp
ATGGCCGAGCCGCTTCTCGTTTCCATCATCCTCCTCTCACTCCTCTCTTTCTCATCCGCCCTCCCCGCCCAGGCCGTCCAAGATGCCGCCGAAATCCTCTCTGATTCTGGCTACGTCTCCATGGCGATGACTCTTGAGCTCGTCTCCGAGTCCCTCATCCCTCAGTCCCCCTCGCTTACCATCTTCGCTCCGCCGGACTCCGCCTTCACCAAATCAGGTCAACCTGCCCTCTCTCTGCTCCAGTACCACTTCTGCCTTCTTCCCCTGCCCCTCCAAACCCTCAAATCCCTCCCCCCCGGCACCAAGATCCCGACTTTACTCTCCGGCCACTCTCTTTCCGTCACCACGCCCCCCTCCGGCGTTCCAATTTCTCTCAACAACGTCAAGATCACTTCCGGGTCGCCTATCTACGACGACGGGTTCCTCATCATTTTCGGAATCGAGAACTTCTTCGACCTCAATTTTCATCTCCCGACACCGACTCGGATCCCCATTCCAGATCCGGTTTGCGGGTCTTCATCCCCAGCGCCCTCCGCCAACGGCACAGCCACAGCTGGGTTTCCCGGAGCGTCCTGGTTCGAAGAAGCGAGTGAGATGCTGAGGTCCCATGGCTACAATGTCATGGCGTCGTTCCTCGATCTGCAACTTCTTGGCTTCAAGAACGCGAATCCGATGACCGTGTTCGCTCCTCTCGACCAAGCGATGGACAACCCACTGCAAGAATCCTCGATCTTTCTCCGACACGTCGTTCCGTGCCGGCTGATGTGGAGCGATTTGGCGGGTTTCAATGACGGCGTTGTGCTTCCAACGTATATGCAGGGTTTCACCATCACAATCTCGAGGAACGGCGACGTTTTGCTGCTGAATGGAGTTCCGGTCTTCTTTGCCAACATGTATTACGGCGACACCTTCGTCGTTCACGGCCTCCGCGAGACTCTTGCGATGCCGGAGACGCCGGAAGATGCCGATGAGTCTTCGCTGGGAAGTGGAAGAACCGACGATGAGGTGCCTTTTGATAATACTGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

344

Amino Acids

36.84

Weight (kDa)

4.28

Isoelectric Point (pI)

51.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 220 - 313 3.5e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000614)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 911
Acc36I ACCTGC 1 cut(s) 232
AccB1I GGYRCC 2 cut(s) 299, 1006
AccB7I CCANNNNNTGG 1 cut(s) 703
AccII CGCG 2 cut(s) 665, 930
AclWI GGATC 4 cut(s) 301, 481, 494, 494
AcoI YGGCCR 2 cut(s) 3, 325
AcsI RAATTY 1 cut(s) 1025
AcyI GRCGYC 2 cut(s) 626, 953
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 5 cut(s) 70, 356, 509, 555, 703
AflIII ACRYGT 2 cut(s) 742, 891
AgsI TTSAA 2 cut(s) 658, 787
AjiI CACGTC 1 cut(s) 745
AjnI CCWGG 2 cut(s) 69, 572
AluBI AGCT 2 cut(s) 139, 554
AluI AGCT 2 cut(s) 139, 554
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 4 cut(s) 121, 148, 926, 944
AlwI GGATC 4 cut(s) 301, 481, 494, 494
Ama87I CYCGRG 1 cut(s) 838
AoxI GGCC 4 cut(s) 3, 72, 325, 922
ApeKI GCWGC 1 cut(s) 859
ApoI RAATTY 1 cut(s) 1025
Asp700I GAANNNNTTC 1 cut(s) 449
AspLEI GCGC 1 cut(s) 529
AspS9I GGNCC 1 cut(s) 603
AsuC2I CCSGG 3 cut(s) 297, 397, 564
AsuHPI GGTGA 3 cut(s) 199, 334, 817
AsuII TTCGAA 1 cut(s) 579
AvaI CYCGRG 1 cut(s) 838
AvaII GGWCC 1 cut(s) 603
BamHI GGATCC 1 cut(s) 486
BanI GGYRCC 2 cut(s) 299, 1006
BanII GRGCYC 1 cut(s) 141
BbsI GAAGAC 3 cut(s) 507, 871, 966
Bbv12I GWGCWC 1 cut(s) 141
BbvCI CCTCAGC 1 cut(s) 599
BbvI GCAGC 1 cut(s) 846
BccI CCATC 4 cut(s) 32, 188, 697, 836
BceAI ACGGC 6 cut(s) 59, 556, 808, 862, 916, 937
BcgI CGANNNNNNTGC 4 cut(s) 577, 611, 920, 954
BciT130I CCWGG 2 cut(s) 71, 574
BcnI CCSGG 3 cut(s) 297, 397, 564
BcoDI GTCTC 4 cut(s) 121, 148, 926, 944
BfoI RGCGCY 1 cut(s) 530
BfuAI ACCTGC 1 cut(s) 232
BisI GCNGC 3 cut(s) 11, 87, 860
BlsI GCNGC 3 cut(s) 12, 88, 861
Bme1390I CCNGG 5 cut(s) 71, 297, 397, 564, 574
Bme18I GGWCC 1 cut(s) 603
BmeT110I CYCGRG 1 cut(s) 838
BmgBI CACGTC 1 cut(s) 745
BmgT120I GGNCC 1 cut(s) 603
BmiI GGNNCC 5 cut(s) 301, 422, 488, 605, 1008
BmrFI CCNGG 5 cut(s) 71, 297, 397, 564, 574
BmsI GCATC 4 cut(s) 73, 585, 933, 952
BpiI GAAGAC 3 cut(s) 507, 871, 966
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpmI CTGGAG 1 cut(s) 224
Bpu10I CCTNAGC 1 cut(s) 599
Bpu14I TTCGAA 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 3 cut(s) 297, 397, 564
BsaHI GRCGYC 2 cut(s) 626, 953
BsaJI CCNNGG 4 cut(s) 69, 120, 295, 607
BsaWI WCCGGW 2 cut(s) 502, 874
BsaXI ACNNNNNCTCC 2 cut(s) 861, 891
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 356, 509, 555, 703
Bse118I RCCGGY 1 cut(s) 756
Bse1I ACTGG 1 cut(s) 241
BseBI CCWGG 2 cut(s) 71, 574
BseDI CCNNGG 4 cut(s) 69, 120, 295, 607
BseGI GGATG 4 cut(s) 27, 53, 156, 518
BseLI CCNNNNNNNGG 5 cut(s) 70, 356, 509, 555, 703
BseMII CTCAG 2 cut(s) 176, 590
BseNI ACTGG 1 cut(s) 241
BseRI GAGGAG 3 cut(s) 23, 32, 678
BseXI GCAGC 1 cut(s) 846
BseYI CCCAGC 3 cut(s) 523, 554, 979
Bsh1236I CGCG 2 cut(s) 665, 930
BshFI GGCC 4 cut(s) 5, 74, 327, 924
BshNI GGYRCC 2 cut(s) 299, 1006
BsiHKAI GWGCWC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 838
BslFI GGGAC 3 cut(s) 136, 151, 589
BslI CCNNNNNNNGG 5 cut(s) 70, 356, 509, 555, 703
BsmAI GTCTC 4 cut(s) 121, 148, 926, 944
BsmBI CGTCTC 3 cut(s) 121, 148, 944
BsmFI GGGAC 3 cut(s) 136, 151, 589
BsnI GGCC 4 cut(s) 5, 74, 327, 924
BsoBI CYCGRG 1 cut(s) 838
Bsp119I TTCGAA 1 cut(s) 579
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 6 cut(s) 306, 387, 486, 499, 637, 729
Bsp19I CCATGG 2 cut(s) 120, 607
BspANI GGCC 4 cut(s) 5, 74, 327, 924
BspCNI CTCAG 2 cut(s) 175, 591
BspFNI CGCG 2 cut(s) 665, 930
BspLI GGNNCC 5 cut(s) 301, 422, 488, 605, 1008
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 4 cut(s) 301, 481, 494, 494
BspT104I TTCGAA 1 cut(s) 579
BspT107I GGYRCC 2 cut(s) 299, 1006
BsrFI RCCGGY 1 cut(s) 756
BsrI ACTGG 1 cut(s) 241
BssAI RCCGGY 1 cut(s) 756
BssECI CCNNGG 4 cut(s) 69, 120, 295, 607
BssMI GATC 6 cut(s) 306, 387, 486, 499, 637, 729
BssNI GRCGYC 2 cut(s) 626, 953
BssT1I CCWWGG 2 cut(s) 120, 607
Bst2UI CCWGG 2 cut(s) 71, 574
Bst4CI ACNGT 1 cut(s) 679
BstACI GRCGYC 2 cut(s) 626, 953
BstBI TTCGAA 1 cut(s) 579
BstC8I GCNNGC 1 cut(s) 758
BstDEI CTNAG 2 cut(s) 162, 599
BstDSI CCRYGG 2 cut(s) 120, 607
BstF5I GGATG 4 cut(s) 27, 53, 156, 518
BstFNI CGCG 2 cut(s) 665, 930
BstH2I RGCGCY 1 cut(s) 530
BstHHI GCGC 1 cut(s) 529
BstKTI GATC 6 cut(s) 309, 390, 489, 502, 640, 732
BstMAI GTCTC 4 cut(s) 121, 148, 926, 944
BstMBI GATC 6 cut(s) 306, 387, 486, 499, 637, 729
BstMWI GCNNNNNNNGC 3 cut(s) 65, 533, 952
BstNI CCWGG 2 cut(s) 71, 574
BstNSI RCATGY 1 cut(s) 895
BstSCI CCNGG 5 cut(s) 69, 295, 395, 562, 572
BstUI CGCG 2 cut(s) 665, 930
BstV1I GCAGC 1 cut(s) 846
BstV2I GAAGAC 3 cut(s) 507, 871, 966
BstX2I RGATCY 3 cut(s) 306, 486, 499
BstYI RGATCY 3 cut(s) 306, 486, 499
BsuRI GGCC 4 cut(s) 5, 74, 327, 924
BtgI CCRYGG 2 cut(s) 120, 607
BtgZI GCGATG 3 cut(s) 140, 716, 956
BtrI CACGTC 1 cut(s) 745
BtsCI GGATG 4 cut(s) 27, 53, 156, 518
BtsI GCAGTG 1 cut(s) 713
BtsIMutI CAGTG 1 cut(s) 713
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 758
CfoI GCGC 1 cut(s) 529
Cfr10I RCCGGY 1 cut(s) 756
Cfr13I GGNCC 1 cut(s) 603
CseI GACGC 3 cut(s) 558, 615, 961
Csp6I GTAC 1 cut(s) 244
CviAII CATG 4 cut(s) 121, 608, 622, 892
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 2 cut(s) 162, 599
DpnI GATC 6 cut(s) 308, 389, 488, 501, 639, 731
DpnII GATC 6 cut(s) 306, 387, 486, 499, 637, 729
DrdI GACNNNNNNGTC 1 cut(s) 911
DseDI GACNNNNNNGTC 1 cut(s) 911
EaeI YGGCCR 2 cut(s) 3, 325
EciI GGCGGA 4 cut(s) 46, 180, 190, 523
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 2 cut(s) 120, 607
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 603
Eco53kI GAGCTC 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 838
EcoICRI GAGCTC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 603
EcoRII CCWGG 2 cut(s) 69, 572
EcoT14I CCWWGG 2 cut(s) 120, 607
EcoT38I GRGCYC 1 cut(s) 141
ErhI CCWWGG 2 cut(s) 120, 607
Esp3I CGTCTC 3 cut(s) 121, 148, 944
FaeI CATG 4 cut(s) 124, 611, 625, 895
FaiI YATR 6 cut(s) 122, 609, 623, 813, 815, 893
FaqI GGGAC 3 cut(s) 136, 151, 589
FatI CATG 4 cut(s) 120, 607, 621, 891
FauI CCCGC 3 cut(s) 73, 503, 772
Fnu4HI GCNGC 3 cut(s) 11, 87, 860
FokI GGATG 4 cut(s) 14, 40, 143, 505
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 3 cut(s) 11, 87, 860
GlaI GCGC 1 cut(s) 528
GluI GCNGC 3 cut(s) 11, 87, 860
GsaI CCCAGC 3 cut(s) 527, 558, 983
GsuI CTGGAG 1 cut(s) 224
HaeII RGCGCY 1 cut(s) 530
HaeIII GGCC 4 cut(s) 5, 74, 327, 924
HgaI GACGC 3 cut(s) 558, 615, 961
HhaI GCGC 1 cut(s) 529
Hin1I GRCGYC 2 cut(s) 626, 953
Hin1II CATG 4 cut(s) 124, 611, 625, 895
Hin6I GCGC 1 cut(s) 527
HinP1I GCGC 1 cut(s) 527
HincII GTYRAC 1 cut(s) 221
HindII GTYRAC 1 cut(s) 221
HphI GGTGA 3 cut(s) 199, 334, 817
Hpy166II GTNNAC 2 cut(s) 221, 919
Hpy188I TCNGA 6 cut(s) 103, 148, 437, 486, 672, 740
Hpy188III TCNNGA 9 cut(s) 134, 310, 385, 442, 472, 497, 658, 692, 838
Hpy8I GTNNAC 2 cut(s) 221, 919
Hpy99I CGWCG 7 cut(s) 416, 419, 631, 749, 854, 917, 1001
HpyAV CCTTC 3 cut(s) 214, 266, 919
HpyCH4III ACNGT 1 cut(s) 679
HpyCH4IV ACGT 5 cut(s) 114, 381, 744, 809, 852
HpyCH4V TGCA 3 cut(s) 643, 718, 817
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 533, 952
HpyF3I CTNAG 2 cut(s) 162, 599
HpySE526I ACGT 5 cut(s) 114, 381, 744, 809, 852
Hsp92I GRCGYC 2 cut(s) 626, 953
Hsp92II CATG 4 cut(s) 124, 611, 625, 895
HspAI GCGC 1 cut(s) 527
KroI GCCGGC 1 cut(s) 756
KroNI GCCGGC 1 cut(s) 758
Kzo9I GATC 6 cut(s) 306, 387, 486, 499, 637, 729
LmnI GCTCC 5 cut(s) 193, 243, 566, 691, 768
Lsp1109I GCAGC 1 cut(s) 846
LweI GCATC 4 cut(s) 73, 585, 933, 952
MaeII ACGT 5 cut(s) 114, 381, 744, 809, 852
MaeIII GTNAC 1 cut(s) 340
MalI GATC 6 cut(s) 308, 389, 488, 501, 639, 731
MboI GATC 6 cut(s) 306, 387, 486, 499, 637, 729
MboII GAAGA 9 cut(s) 175, 251, 442, 507, 593, 871, 966, 971, 1002
MflI RGATCY 3 cut(s) 306, 486, 499
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 3 cut(s) 366, 460, 1025
MlyI GAGTC 6 cut(s) 124, 158, 191, 475, 928, 980
MmeI TCCRAC 2 cut(s) 763, 830
MroNI GCCGGC 1 cut(s) 756
MroXI GAANNNNTTC 1 cut(s) 449
MslI CAYNNNNRTG 1 cut(s) 125
MspA1I CMGCKG 1 cut(s) 554
MspR9I CCNGG 5 cut(s) 71, 297, 397, 564, 574
MvaI CCWGG 2 cut(s) 71, 574
MvnI CGCG 2 cut(s) 665, 930
MwoI GCNNNNNNNGC 3 cut(s) 65, 533, 952
NaeI GCCGGC 1 cut(s) 758
NciI CCSGG 3 cut(s) 297, 397, 564
NcoI CCATGG 2 cut(s) 120, 607
NdeII GATC 6 cut(s) 306, 387, 486, 499, 637, 729
NgoMIV GCCGGC 1 cut(s) 756
NlaIII CATG 4 cut(s) 124, 611, 625, 895
NlaIV GGNNCC 5 cut(s) 301, 422, 488, 605, 1008
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 340
NspI RCATGY 1 cut(s) 895
NspV TTCGAA 1 cut(s) 579
PaeR7I CTCGAG 1 cut(s) 838
PciI ACATGT 1 cut(s) 891
PcsI WCGNNNNNNNCGW 2 cut(s) 690, 927
PdiI GCCGGC 1 cut(s) 758
PdmI GAANNNNTTC 1 cut(s) 449
PfeI GAWTC 4 cut(s) 104, 438, 667, 722
PflMI CCANNNNNTGG 1 cut(s) 703
PfoI TCCNGGA 1 cut(s) 562
PkrI GCNGC 3 cut(s) 12, 88, 861
PleI GAGTC 6 cut(s) 124, 157, 191, 475, 928, 979
PpsI GAGTC 6 cut(s) 124, 157, 191, 475, 928, 979
PpuMI RGGWCCY 1 cut(s) 603
PscI ACATGT 1 cut(s) 891
Psp124BI GAGCTC 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 603
Psp6I CCWGG 2 cut(s) 69, 572
PspFI CCCAGC 3 cut(s) 523, 554, 979
PspGI CCWGG 2 cut(s) 69, 572
PspN4I GGNNCC 5 cut(s) 301, 422, 488, 605, 1008
PspPI GGNCC 1 cut(s) 603
PspPPI RGGWCCY 1 cut(s) 603
PsuI RGATCY 3 cut(s) 306, 486, 499
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 125
SacI GAGCTC 1 cut(s) 141
SatI GCNGC 3 cut(s) 11, 87, 860
Sau3AI GATC 6 cut(s) 306, 387, 486, 499, 637, 729
Sau96I GGNCC 1 cut(s) 603
SchI GAGTC 6 cut(s) 124, 158, 191, 475, 928, 980
ScrFI CCNGG 5 cut(s) 71, 297, 397, 564, 574
SduI GDGCHC 1 cut(s) 141
SfaNI GCATC 4 cut(s) 73, 585, 933, 952
Sfr274I CTCGAG 1 cut(s) 838
SfuI TTCGAA 1 cut(s) 579
SinI GGWCC 1 cut(s) 603
SlaI CTCGAG 1 cut(s) 838
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 2 cut(s) 134, 838
SmoI CTYRAG 2 cut(s) 134, 838
Sse9I AATT 3 cut(s) 366, 460, 1025
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 5 cut(s) 69, 295, 395, 562, 572
StyI CCWWGG 2 cut(s) 120, 607
TaaI ACNGT 1 cut(s) 679
TaiI ACGT 5 cut(s) 117, 384, 747, 812, 855
TaqI TCGA 7 cut(s) 441, 453, 579, 636, 693, 728, 839
TasI AATT 3 cut(s) 366, 460, 1025
TauI GCSGC 2 cut(s) 13, 89
TfiI GAWTC 4 cut(s) 104, 438, 667, 722
TscAI CASTG 1 cut(s) 720
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 1 cut(s) 859
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 2 cut(s) 455, 507
TspGWI ACGGA 2 cut(s) 328, 741
TspRI CASTG 1 cut(s) 720
Van91I CCANNNNNTGG 1 cut(s) 703
VpaK11BI GGWCC 1 cut(s) 603
XapI RAATTY 1 cut(s) 1025
XceI RCATGY 1 cut(s) 895
XhoI CTCGAG 1 cut(s) 838
XmnI GAANNNNTTC 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.