MD16G1031100.v1.1

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
2214729 .. 2215760
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1031100.v1.1.491

Sequence Viewer

Length: 1032 bp
ATGGAGGCGCCGCTTCTCGTCTCCCTCATCCTCCTCTCACTCCTCTCTTTCTCATCCGCGCTCCCCGCCCAGGCCATCCAAGATGCCGCCGAAATCCTCTCCGATTCCGGCTACGTCTCCATGGCGCTGACTCTTGAGCTCGTATCCCAGTCCCTCGTGCTGCAGTCCCCCTCCCTCACCATCTTCACTCCGCCGGACACCGCCTTCACCAAATTGGGTCAACCCGCCCTCTCTCTGCTCCAATACCACTTCTGCCCTGTTCCCCTGCCCCTCCAAACCCTCAAATCCCTACCCTCTGGCAGCAAGATCCCGACTTTACTCTCCGGACACTCCCTCTCCGTCACCACGCCACCCTCCGGCGCCCCAATTTCGCTCAACAATGTCAAGATCACTTCCGGGTCGCCCATTTACGACGACGGGTTCCTCATCATTTTCGGAATCGATACCTTCTTCGACCTCAATTTTCATCTCCCGATACCGACTCCGATCCCCGTTCCAGATCTGGTCTGTGGGTCTTCTTCCCCGCCGTCGTCCGCCAGCGGCACAACTGCAATTAGGTTTCCCGGAGCTTCCTGGTTCGAAGAAGCGAGTGAAATGCTGAGGTCCAATGGCTACAATGTCATGGCGTCGTTCCTCAACTTGCAACTTCTGGGTTTCAAGAACGCGACTCCAATGACCGTGTTCGCTCCTCTCGACCAAGCGATGGACAACCCACTGCAAGAACCCTCGATCTTTCTGCGACACGTCGTTCCGTGCCGGCTGATATGGAGCGATTTGGCTGGTTTCACAGACGGCGTTGTGCTTCCGACGTATATGCAGGATTTTACCATCACCATCTCGAGGAACGGCAACGTTTTGCTGCTGAATGGAGTTCCAGTCTTCTTCGCCAACATGTATTACGGCGACACCTTCGTCATTCACGGCCTCCGCGAGACTCTTGCCATGCCGGAGACGCCGGAATCGGCCGATGAGTCTTCGCCGGGAAGTGGAAGAACCGACGATGAGGTGCCTTTTTATAATACTGAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

344

Amino Acids

36.86

Weight (kDa)

4.35

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000614)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1017
AasI GACNNNNNNGTC 1 cut(s) 911
AccB1I GGYRCC 3 cut(s) 7, 359, 1006
AccB7I CCANNNNNTGG 1 cut(s) 703
AccII CGCG 3 cut(s) 59, 665, 930
AccIII TCCGGA 1 cut(s) 323
AclI AACGTT 1 cut(s) 852
AclWI GGATC 2 cut(s) 301, 481
AcoI YGGCCR 1 cut(s) 963
AcyI GRCGYC 4 cut(s) 8, 360, 626, 953
AfiI CCNNNNNNNGG 5 cut(s) 70, 356, 703, 840, 986
AflIII ACRYGT 2 cut(s) 742, 891
AgsI TTSAA 1 cut(s) 658
AjiI CACGTC 1 cut(s) 745
AjnI CCWGG 2 cut(s) 69, 572
AluBI AGCT 2 cut(s) 139, 569
AluI AGCT 2 cut(s) 139, 569
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 4 cut(s) 25, 121, 926, 944
AlwI GGATC 2 cut(s) 301, 481
Ama87I CYCGRG 1 cut(s) 838
Aor13HI TCCGGA 1 cut(s) 323
AoxI GGCC 3 cut(s) 72, 922, 963
ApeKI GCWGC 3 cut(s) 160, 300, 859
AspLEI GCGC 4 cut(s) 10, 61, 127, 362
AspS9I GGNCC 1 cut(s) 603
AsuC2I CCSGG 3 cut(s) 397, 564, 981
AsuHPI GGTGA 4 cut(s) 169, 199, 334, 823
AsuII TTCGAA 1 cut(s) 579
AvaI CYCGRG 1 cut(s) 838
AvaII GGWCC 1 cut(s) 603
BanI GGYRCC 3 cut(s) 7, 359, 1006
BanII GRGCYC 1 cut(s) 141
BauI CACGAG 1 cut(s) 155
BbsI GAAGAC 3 cut(s) 507, 871, 966
Bbv12I GWGCWC 1 cut(s) 141
BbvCI CCTCAGC 1 cut(s) 599
BbvI GCAGC 3 cut(s) 147, 312, 846
BccI CCATC 5 cut(s) 83, 188, 697, 836, 842
BceAI ACGGC 5 cut(s) 511, 808, 862, 916, 937
BcgI CGANNNNNNTGC 8 cut(s) 577, 611, 718, 752, 796, 830, 920, 954
BciT130I CCWGG 2 cut(s) 71, 574
BciVI GTATCC 1 cut(s) 154
BcnI CCSGG 3 cut(s) 397, 564, 981
BcoDI GTCTC 4 cut(s) 25, 121, 926, 944
BfmI CTRYAG 1 cut(s) 161
BfoI RGCGCY 3 cut(s) 11, 128, 363
BfuI GTATCC 1 cut(s) 154
BglII AGATCT 1 cut(s) 499
BisI GCNGC 6 cut(s) 11, 87, 161, 301, 541, 860
BlsI GCNGC 6 cut(s) 12, 88, 162, 302, 542, 861
Bme1390I CCNGG 5 cut(s) 71, 397, 564, 574, 981
Bme18I GGWCC 1 cut(s) 603
BmeT110I CYCGRG 1 cut(s) 838
BmgBI CACGTC 1 cut(s) 745
BmgT120I GGNCC 1 cut(s) 603
BmiI GGNNCC 4 cut(s) 9, 361, 422, 1008
BmrFI CCNGG 5 cut(s) 71, 397, 564, 574, 981
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 1 cut(s) 73
BmuI ACTGGG 1 cut(s) 142
BpiI GAAGAC 3 cut(s) 507, 871, 966
Bpu10I CCTNAGC 1 cut(s) 599
Bpu14I TTCGAA 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 3 cut(s) 397, 564, 981
Bsa29I ATCGAT 1 cut(s) 441
BsaHI GRCGYC 4 cut(s) 8, 360, 626, 953
BsaJI CCNNGG 2 cut(s) 69, 120
BsaWI WCCGGW 1 cut(s) 323
BsaXI ACNNNNNCTCC 4 cut(s) 320, 350, 861, 891
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 356, 703, 840, 986
Bse118I RCCGGY 1 cut(s) 756
Bse1I ACTGG 2 cut(s) 148, 875
BseAI TCCGGA 1 cut(s) 323
BseBI CCWGG 2 cut(s) 71, 574
BseCI ATCGAT 1 cut(s) 441
BseDI CCNNGG 2 cut(s) 69, 120
BseGI GGATG 3 cut(s) 27, 53, 75
BseLI CCNNNNNNNGG 5 cut(s) 70, 356, 703, 840, 986
BseMII CTCAG 1 cut(s) 590
BseNI ACTGG 2 cut(s) 148, 875
BseRI GAGGAG 3 cut(s) 23, 32, 678
BseX3I CGGCCG 1 cut(s) 963
BseXI GCAGC 3 cut(s) 147, 312, 846
Bsh1236I CGCG 3 cut(s) 59, 665, 930
Bsh1285I CGRYCG 1 cut(s) 966
BshFI GGCC 3 cut(s) 74, 924, 965
BshNI GGYRCC 3 cut(s) 7, 359, 1006
BshVI ATCGAT 1 cut(s) 441
BsiEI CGRYCG 1 cut(s) 966
BsiHKAI GWGCWC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 838
BslFI GGGAC 2 cut(s) 136, 151
BslI CCNNNNNNNGG 5 cut(s) 70, 356, 703, 840, 986
BsmAI GTCTC 4 cut(s) 25, 121, 926, 944
BsmBI CGTCTC 3 cut(s) 25, 121, 944
BsmFI GGGAC 2 cut(s) 136, 151
BsnI GGCC 3 cut(s) 74, 924, 965
BsoBI CYCGRG 1 cut(s) 838
Bsp119I TTCGAA 1 cut(s) 579
Bsp1286I GDGCHC 1 cut(s) 141
Bsp13I TCCGGA 1 cut(s) 323
Bsp143I GATC 5 cut(s) 306, 387, 486, 499, 729
Bsp19I CCATGG 1 cut(s) 120
BspANI GGCC 3 cut(s) 74, 924, 965
BspCNI CTCAG 1 cut(s) 591
BspDI ATCGAT 1 cut(s) 441
BspEI TCCGGA 1 cut(s) 323
BspFNI CGCG 3 cut(s) 59, 665, 930
BspLI GGNNCC 4 cut(s) 9, 361, 422, 1008
BspMAI CTGCAG 1 cut(s) 165
BspPI GGATC 2 cut(s) 301, 481
BspT104I TTCGAA 1 cut(s) 579
BspT107I GGYRCC 3 cut(s) 7, 359, 1006
BsrFI RCCGGY 1 cut(s) 756
BsrI ACTGG 2 cut(s) 148, 875
BssAI RCCGGY 1 cut(s) 756
BssECI CCNNGG 2 cut(s) 69, 120
BssMI GATC 5 cut(s) 306, 387, 486, 499, 729
BssNI GRCGYC 4 cut(s) 8, 360, 626, 953
BssSI CACGAG 1 cut(s) 155
BssT1I CCWWGG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 155
Bst2UI CCWGG 2 cut(s) 71, 574
Bst4CI ACNGT 1 cut(s) 679
BstACI GRCGYC 4 cut(s) 8, 360, 626, 953
BstBI TTCGAA 1 cut(s) 579
BstC8I GCNNGC 2 cut(s) 538, 758
BstDEI CTNAG 1 cut(s) 599
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 3 cut(s) 27, 53, 75
BstFNI CGCG 3 cut(s) 59, 665, 930
BstH2I RGCGCY 3 cut(s) 11, 128, 363
BstHHI GCGC 4 cut(s) 10, 61, 127, 362
BstKTI GATC 5 cut(s) 309, 390, 489, 502, 732
BstMAI GTCTC 4 cut(s) 25, 121, 926, 944
BstMBI GATC 5 cut(s) 306, 387, 486, 499, 729
BstMCI CGRYCG 1 cut(s) 966
BstMWI GCNNNNNNNGC 2 cut(s) 65, 952
BstNI CCWGG 2 cut(s) 71, 574
BstNSI RCATGY 1 cut(s) 895
BstSCI CCNGG 5 cut(s) 69, 395, 562, 572, 979
BstSFI CTRYAG 1 cut(s) 161
BstUI CGCG 3 cut(s) 59, 665, 930
BstV1I GCAGC 3 cut(s) 147, 312, 846
BstV2I GAAGAC 3 cut(s) 507, 871, 966
BstX2I RGATCY 2 cut(s) 306, 499
BstYI RGATCY 2 cut(s) 306, 499
BstZI CGGCCG 1 cut(s) 963
Bsu15I ATCGAT 1 cut(s) 441
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 3 cut(s) 74, 924, 965
BsuTUI ATCGAT 1 cut(s) 441
BtgI CCRYGG 1 cut(s) 120
BtgZI GCGATG 1 cut(s) 716
BtrI CACGTC 1 cut(s) 745
BtsCI GGATG 3 cut(s) 27, 53, 75
BtsI GCAGTG 1 cut(s) 713
BtsIMutI CAGTG 1 cut(s) 713
Cac8I GCNNGC 2 cut(s) 538, 758
CfoI GCGC 4 cut(s) 10, 61, 127, 362
Cfr10I RCCGGY 1 cut(s) 756
Cfr13I GGNCC 1 cut(s) 603
ClaI ATCGAT 1 cut(s) 441
CseI GACGC 2 cut(s) 615, 961
CviAII CATG 4 cut(s) 121, 622, 892, 943
CviJI RGCY 9 cut(s) 74, 111, 139, 569, 612, 760, 779, 924, 965
CviKI_1 RGCY 9 cut(s) 74, 111, 139, 569, 612, 760, 779, 924, 965
DdeI CTNAG 1 cut(s) 599
DinI GGCGCC 2 cut(s) 9, 361
DpnI GATC 5 cut(s) 308, 389, 488, 501, 731
DpnII GATC 5 cut(s) 306, 387, 486, 499, 729
DrdI GACNNNNNNGTC 1 cut(s) 911
DseDI GACNNNNNNGTC 1 cut(s) 911
EaeI YGGCCR 1 cut(s) 963
EagI CGGCCG 1 cut(s) 963
EciI GGCGGA 2 cut(s) 180, 523
Ecl136II GAGCTC 1 cut(s) 139
EclXI CGGCCG 1 cut(s) 963
Eco130I CCWWGG 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 603
Eco52I CGGCCG 1 cut(s) 963
Eco53kI GAGCTC 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 838
EcoICRI GAGCTC 1 cut(s) 139
EcoRII CCWGG 2 cut(s) 69, 572
EcoT14I CCWWGG 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 141
EgeI GGCGCC 2 cut(s) 9, 361
EheI GGCGCC 2 cut(s) 9, 361
ErhI CCWWGG 1 cut(s) 120
Esp3I CGTCTC 3 cut(s) 25, 121, 944
FaeI CATG 4 cut(s) 124, 625, 895, 946
FaiI YATR 8 cut(s) 122, 623, 766, 813, 815, 893, 944, 1017
FaqI GGGAC 2 cut(s) 136, 151
FatI CATG 4 cut(s) 120, 621, 891, 942
FauI CCCGC 3 cut(s) 73, 232, 531
Fnu4HI GCNGC 6 cut(s) 11, 87, 161, 301, 541, 860
FokI GGATG 3 cut(s) 14, 40, 62
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 6 cut(s) 11, 87, 161, 301, 541, 860
GlaI GCGC 4 cut(s) 9, 60, 126, 361
GluI GCNGC 6 cut(s) 11, 87, 161, 301, 541, 860
HaeII RGCGCY 3 cut(s) 11, 128, 363
HaeIII GGCC 3 cut(s) 74, 924, 965
HgaI GACGC 2 cut(s) 615, 961
HhaI GCGC 4 cut(s) 10, 61, 127, 362
Hin1I GRCGYC 4 cut(s) 8, 360, 626, 953
Hin1II CATG 4 cut(s) 124, 625, 895, 946
Hin6I GCGC 4 cut(s) 8, 59, 125, 360
HinP1I GCGC 4 cut(s) 8, 59, 125, 360
HincII GTYRAC 1 cut(s) 221
HindII GTYRAC 1 cut(s) 221
HinfI GANTC 8 cut(s) 104, 130, 438, 481, 667, 934, 959, 971
HphI GGTGA 4 cut(s) 169, 199, 334, 823
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 4 cut(s) 103, 437, 486, 807
Hpy188III TCNNGA 9 cut(s) 134, 310, 324, 385, 472, 497, 658, 692, 838
Hpy8I GTNNAC 1 cut(s) 221
Hpy99I CGWCG 7 cut(s) 416, 419, 532, 631, 749, 811, 1001
HpyAV CCTTC 3 cut(s) 214, 457, 919
HpyCH4III ACNGT 1 cut(s) 679
HpyCH4IV ACGT 4 cut(s) 114, 744, 809, 852
HpyCH4V TGCA 5 cut(s) 163, 551, 643, 718, 817
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 952
HpyF3I CTNAG 1 cut(s) 599
HpySE526I ACGT 4 cut(s) 114, 744, 809, 852
Hsp92I GRCGYC 4 cut(s) 8, 360, 626, 953
Hsp92II CATG 4 cut(s) 124, 625, 895, 946
HspAI GCGC 4 cut(s) 8, 59, 125, 360
KasI GGCGCC 2 cut(s) 7, 359
Kpn2I TCCGGA 1 cut(s) 323
KroI GCCGGC 1 cut(s) 756
KroNI GCCGGC 1 cut(s) 758
Kzo9I GATC 5 cut(s) 306, 387, 486, 499, 729
LmnI GCTCC 5 cut(s) 66, 243, 566, 691, 768
Lsp1109I GCAGC 3 cut(s) 147, 312, 846
LweI GCATC 1 cut(s) 73
MaeII ACGT 4 cut(s) 114, 744, 809, 852
MaeIII GTNAC 1 cut(s) 340
MalI GATC 5 cut(s) 308, 389, 488, 501, 731
MboI GATC 5 cut(s) 306, 387, 486, 499, 729
MboII GAAGA 9 cut(s) 175, 442, 507, 510, 593, 871, 874, 966, 1002
MflI RGATCY 2 cut(s) 306, 499
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 5 cut(s) 212, 366, 460, 552, 1025
Mly113I GGCGCC 2 cut(s) 8, 360
MlyI GAGTC 5 cut(s) 124, 475, 661, 928, 980
MmeI TCCRAC 1 cut(s) 830
MroI TCCGGA 1 cut(s) 323
MroNI GCCGGC 1 cut(s) 756
MspA1I CMGCKG 1 cut(s) 540
MspR9I CCNGG 5 cut(s) 71, 397, 564, 574, 981
MvaI CCWGG 2 cut(s) 71, 574
MvnI CGCG 3 cut(s) 59, 665, 930
MwoI GCNNNNNNNGC 2 cut(s) 65, 952
NaeI GCCGGC 1 cut(s) 758
NarI GGCGCC 2 cut(s) 8, 360
NciI CCSGG 3 cut(s) 397, 564, 981
NcoI CCATGG 1 cut(s) 120
NdeII GATC 5 cut(s) 306, 387, 486, 499, 729
NgoMIV GCCGGC 1 cut(s) 756
NlaIII CATG 4 cut(s) 124, 625, 895, 946
NlaIV GGNNCC 4 cut(s) 9, 361, 422, 1008
NmuCI GTSAC 1 cut(s) 340
NspI RCATGY 1 cut(s) 895
NspV TTCGAA 1 cut(s) 579
PaeR7I CTCGAG 1 cut(s) 838
PciI ACATGT 1 cut(s) 891
PcsI WCGNNNNNNNCGW 2 cut(s) 690, 927
PdiI GCCGGC 1 cut(s) 758
PfeI GAWTC 3 cut(s) 104, 438, 959
PflMI CCANNNNNTGG 1 cut(s) 703
PfoI TCCNGGA 1 cut(s) 562
PkrI GCNGC 6 cut(s) 12, 88, 162, 302, 542, 861
PleI GAGTC 5 cut(s) 124, 475, 661, 928, 979
PluTI GGCGCC 2 cut(s) 11, 363
PpsI GAGTC 5 cut(s) 124, 475, 661, 928, 979
PscI ACATGT 1 cut(s) 891
PsiI TTATAA 1 cut(s) 1017
Psp124BI GAGCTC 1 cut(s) 141
Psp1406I AACGTT 1 cut(s) 852
Psp6I CCWGG 2 cut(s) 69, 572
PspGI CCWGG 2 cut(s) 69, 572
PspN4I GGNNCC 4 cut(s) 9, 361, 422, 1008
PspPI GGNCC 1 cut(s) 603
PstI CTGCAG 1 cut(s) 165
PsuI RGATCY 2 cut(s) 306, 499
SacI GAGCTC 1 cut(s) 141
SatI GCNGC 6 cut(s) 11, 87, 161, 301, 541, 860
Sau3AI GATC 5 cut(s) 306, 387, 486, 499, 729
Sau96I GGNCC 1 cut(s) 603
SchI GAGTC 5 cut(s) 124, 475, 661, 928, 980
ScrFI CCNGG 5 cut(s) 71, 397, 564, 574, 981
SduI GDGCHC 1 cut(s) 141
SfaNI GCATC 1 cut(s) 73
SfcI CTRYAG 1 cut(s) 161
SfoI GGCGCC 2 cut(s) 9, 361
Sfr274I CTCGAG 1 cut(s) 838
SfuI TTCGAA 1 cut(s) 579
SinI GGWCC 1 cut(s) 603
SlaI CTCGAG 1 cut(s) 838
SmlI CTYRAG 2 cut(s) 134, 838
SmoI CTYRAG 2 cut(s) 134, 838
Sse9I AATT 5 cut(s) 212, 366, 460, 552, 1025
SspDI GGCGCC 2 cut(s) 7, 359
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 5 cut(s) 69, 395, 562, 572, 979
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 679
TaiI ACGT 4 cut(s) 117, 747, 812, 855
TaqI TCGA 6 cut(s) 441, 453, 579, 693, 728, 839
TasI AATT 5 cut(s) 212, 366, 460, 552, 1025
TauI GCSGC 3 cut(s) 13, 89, 543
TfiI GAWTC 3 cut(s) 104, 438, 959
TscAI CASTG 1 cut(s) 720
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 3 cut(s) 160, 300, 859
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 1 cut(s) 455
TspGWI ACGGA 2 cut(s) 328, 741
TspRI CASTG 1 cut(s) 720
Van91I CCANNNNNTGG 1 cut(s) 703
VpaK11BI GGWCC 1 cut(s) 603
XceI RCATGY 1 cut(s) 895
XhoI CTCGAG 1 cut(s) 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.