MD13G1028200.v1.1

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
2016347 .. 2017492
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1028200.v1.1.491

Sequence Viewer

Length: 1146 bp
ATGCCACTGTCACTCTCACTCGCACTTTGCAACTGCAGTCCAACGAAATCCCACTCCAAGAAACCAAACTTCCTCCTTTTGATTCTTGAAGCTCCTCCACACAACCACCCATCAATGGCGGAGCCGCTTCTCGTTTTCATCATCCTCCTCTCACTCCTCTCTTTCTCATCCGCCCTCCCGGCCCAGGCCGTCCAAGATGCCGCCGAAATCCTCTCTGATTCCGGCTACGTCTCCATGGCGATGACTCTTGAGCTCGTCTCCGAGTCCCTCATCCCTCAGTCCCCCTCGCTTACCATCTTCGCTCCGCCGGACTCCGCCTTCACCAAATCAGGTCAACCTGCCCTCTCTCTGCTCCAGTACCACTTCTGCCCTCTTCCCCTGCCCCTCCAAACCCTCAAATCCCTCCCCCCCGGCACCAAGATCCCGACTTTACTCTCCGGCCACTCTCTCTCCGTCACCACGCCCCCCTCCGGCGTTCCAATTTCGCTCAACAACGTCAAGATCACTTCCGGGTCGCCTATCTACGACGACGGGTTCCTAATCATTTTCGGAATCGAAAACTTCTTCGACCTCAATTTTCATCTCCCGACACCGACTCGGATCCCCCTTCCAGATCCGGTTTGTGGGTCTTCATCCCCACCAACCTCCGCCAACGGCACAGCCACAGCTGGGTTTCCCGGAGCTTCCTGGTTCGAAGAAGCGAGTGAGATGCTGAGGTCCCATGGCTACAATGTCATGGCGTCGTTCCTCGATATGCAACTTCTTGGCTTCAAGAACTCGAATCCGATGACCGTGTTCGCTCCTCTCGACCAAGCGATGGACAACCCACTGCAAGAATCCTCGATCTTTCTCCGACACGTCGTTCCGTGCCGGCTGATGTGGAGCGATTTGGCAGGTTTCAACGACGGCGTTGTGCTTCCGACGTATATGCAGGGTTTCGCCATCACAATCTCGAGGAAAGGCGACGTTTTGCTACTGAATGGAGTTCCGGTCTTCTTCGCCAACATGTACTACGGCGACACCTTCGTCGTTCACGGCCTCCGCGAGACTCTTGTGATGCCAGAGACGCCGGAAGATGCCGATGAGTCTTCGCCGGGAAGTGGAAGAACCGACGATGAGGTGCCGTTTGATAATACTGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

382

Amino Acids

41.06

Weight (kDa)

4.63

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 258 - 352 4.2e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000614)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1025
Acc36I ACCTGC 2 cut(s) 346, 884
AccB1I GGYRCC 2 cut(s) 413, 1120
AccB7I CCANNNNNTGG 1 cut(s) 817
AccII CGCG 1 cut(s) 1044
AciI CCGC 8 cut(s) 119, 125, 171, 201, 305, 315, 648, 1042
AclWI GGATC 4 cut(s) 415, 595, 608, 608
AcoI YGGCCR 1 cut(s) 439
AcsI RAATTY 1 cut(s) 1139
AcyI GRCGYC 2 cut(s) 740, 1067
AfaI GTAC 2 cut(s) 359, 1010
AfiI CCNNNNNNNGG 7 cut(s) 115, 184, 470, 623, 669, 817, 1100
AflIII ACRYGT 2 cut(s) 856, 1005
AgsI TTSAA 3 cut(s) 89, 772, 901
AjiI CACGTC 1 cut(s) 859
AjnI CCWGG 2 cut(s) 183, 686
AluBI AGCT 4 cut(s) 92, 253, 668, 683
AluI AGCT 4 cut(s) 92, 253, 668, 683
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 4 cut(s) 235, 262, 1040, 1058
AlwI GGATC 4 cut(s) 415, 595, 608, 608
Ama87I CYCGRG 1 cut(s) 952
AoxI GGCC 4 cut(s) 180, 186, 439, 1036
ApoI RAATTY 1 cut(s) 1139
AspS9I GGNCC 2 cut(s) 181, 717
AsuC2I CCSGG 5 cut(s) 179, 411, 511, 678, 1095
AsuHPI GGTGA 2 cut(s) 313, 448
AsuII TTCGAA 1 cut(s) 693
AvaI CYCGRG 1 cut(s) 952
AvaII GGWCC 1 cut(s) 717
BamHI GGATCC 1 cut(s) 600
BanI GGYRCC 2 cut(s) 413, 1120
BanII GRGCYC 1 cut(s) 255
BbsI GAAGAC 3 cut(s) 621, 985, 1080
Bbv12I GWGCWC 1 cut(s) 255
BbvCI CCTCAGC 1 cut(s) 713
BccI CCATC 4 cut(s) 118, 302, 811, 950
BceAI ACGGC 6 cut(s) 173, 670, 922, 1030, 1051, 1108
BcgI CGANNNNNNTGC 4 cut(s) 691, 725, 910, 944
BciT130I CCWGG 2 cut(s) 185, 688
BcnI CCSGG 5 cut(s) 179, 411, 511, 678, 1095
BcoDI GTCTC 4 cut(s) 235, 262, 1040, 1058
BfmI CTRYAG 1 cut(s) 34
BfuAI ACCTGC 2 cut(s) 346, 884
BglI GCCNNNNNGGC 1 cut(s) 179
BisI GCNGC 2 cut(s) 125, 201
BlsI GCNGC 2 cut(s) 126, 202
Bme1390I CCNGG 7 cut(s) 179, 185, 411, 511, 678, 688, 1095
Bme18I GGWCC 1 cut(s) 717
BmeT110I CYCGRG 1 cut(s) 952
BmgBI CACGTC 1 cut(s) 859
BmgT120I GGNCC 2 cut(s) 181, 717
BmiI GGNNCC 6 cut(s) 123, 415, 536, 602, 719, 1122
BmrFI CCNGG 7 cut(s) 179, 185, 411, 511, 678, 688, 1095
BmsI GCATC 4 cut(s) 187, 699, 1047, 1066
BpiI GAAGAC 3 cut(s) 621, 985, 1080
BplI GAGNNNNNCTC 2 cut(s) 242, 274
BpmI CTGGAG 1 cut(s) 338
Bpu10I CCTNAGC 1 cut(s) 713
Bpu14I TTCGAA 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 269
BpuMI CCSGG 5 cut(s) 179, 411, 511, 678, 1095
BsaHI GRCGYC 2 cut(s) 740, 1067
BsaJI CCNNGG 4 cut(s) 183, 234, 409, 721
BsaWI WCCGGW 2 cut(s) 616, 988
BsaXI ACNNNNNCTCC 4 cut(s) 434, 464, 975, 1005
Bsc4I CCNNNNNNNGG 7 cut(s) 115, 184, 470, 623, 669, 817, 1100
Bse118I RCCGGY 1 cut(s) 870
Bse1I ACTGG 1 cut(s) 355
BseBI CCWGG 2 cut(s) 185, 688
BseDI CCNNGG 4 cut(s) 183, 234, 409, 721
BseGI GGATG 4 cut(s) 141, 167, 270, 632
BseLI CCNNNNNNNGG 7 cut(s) 115, 184, 470, 623, 669, 817, 1100
BseMII CTCAG 2 cut(s) 290, 704
BseNI ACTGG 1 cut(s) 355
BseRI GAGGAG 4 cut(s) 84, 137, 146, 792
BseYI CCCAGC 1 cut(s) 668
Bsh1236I CGCG 1 cut(s) 1044
BshFI GGCC 4 cut(s) 182, 188, 441, 1038
BshNI GGYRCC 2 cut(s) 413, 1120
BsiHKAI GWGCWC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 952
BslFI GGGAC 3 cut(s) 250, 265, 703
BslI CCNNNNNNNGG 7 cut(s) 115, 184, 470, 623, 669, 817, 1100
BsmAI GTCTC 4 cut(s) 235, 262, 1040, 1058
BsmBI CGTCTC 3 cut(s) 235, 262, 1058
BsmFI GGGAC 3 cut(s) 250, 265, 703
BsnI GGCC 4 cut(s) 182, 188, 441, 1038
BsoBI CYCGRG 1 cut(s) 952
Bsp119I TTCGAA 1 cut(s) 693
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 5 cut(s) 420, 501, 600, 613, 843
Bsp19I CCATGG 2 cut(s) 234, 721
BspACI CCGC 8 cut(s) 119, 125, 171, 201, 305, 315, 648, 1042
BspANI GGCC 4 cut(s) 182, 188, 441, 1038
BspCNI CTCAG 2 cut(s) 289, 705
BspFNI CGCG 1 cut(s) 1044
BspLI GGNNCC 6 cut(s) 123, 415, 536, 602, 719, 1122
BspMAI CTGCAG 1 cut(s) 38
BspMI ACCTGC 2 cut(s) 346, 884
BspPI GGATC 4 cut(s) 415, 595, 608, 608
BspT104I TTCGAA 1 cut(s) 693
BspT107I GGYRCC 2 cut(s) 413, 1120
BsrFI RCCGGY 1 cut(s) 870
BsrI ACTGG 1 cut(s) 355
BssAI RCCGGY 1 cut(s) 870
BssECI CCNNGG 4 cut(s) 183, 234, 409, 721
BssMI GATC 5 cut(s) 420, 501, 600, 613, 843
BssNI GRCGYC 2 cut(s) 740, 1067
BssT1I CCWWGG 2 cut(s) 234, 721
Bst2UI CCWGG 2 cut(s) 185, 688
Bst4CI ACNGT 2 cut(s) 9, 793
Bst6I CTCTTC 1 cut(s) 378
BstACI GRCGYC 2 cut(s) 740, 1067
BstBI TTCGAA 1 cut(s) 693
BstC8I GCNNGC 1 cut(s) 872
BstDEI CTNAG 2 cut(s) 276, 713
BstDSI CCRYGG 2 cut(s) 234, 721
BstF5I GGATG 4 cut(s) 141, 167, 270, 632
BstFNI CGCG 1 cut(s) 1044
BstKTI GATC 5 cut(s) 423, 504, 603, 616, 846
BstMAI GTCTC 4 cut(s) 235, 262, 1040, 1058
BstMBI GATC 5 cut(s) 420, 501, 600, 613, 843
BstMWI GCNNNNNNNGC 2 cut(s) 179, 1066
BstNI CCWGG 2 cut(s) 185, 688
BstNSI RCATGY 1 cut(s) 1009
BstSCI CCNGG 7 cut(s) 177, 183, 409, 509, 676, 686, 1093
BstSFI CTRYAG 1 cut(s) 34
BstUI CGCG 1 cut(s) 1044
BstV2I GAAGAC 3 cut(s) 621, 985, 1080
BstX2I RGATCY 3 cut(s) 420, 600, 613
BstYI RGATCY 3 cut(s) 420, 600, 613
BsuRI GGCC 4 cut(s) 182, 188, 441, 1038
BtgI CCRYGG 2 cut(s) 234, 721
BtgZI GCGATG 2 cut(s) 254, 830
BtrI CACGTC 1 cut(s) 859
BtsCI GGATG 4 cut(s) 141, 167, 270, 632
BtsI GCAGTG 1 cut(s) 827
BtsIMutI CAGTG 2 cut(s) 5, 827
BveI ACCTGC 2 cut(s) 346, 884
Cac8I GCNNGC 1 cut(s) 872
Cfr10I RCCGGY 1 cut(s) 870
Cfr13I GGNCC 2 cut(s) 181, 717
CseI GACGC 2 cut(s) 729, 1075
Csp6I GTAC 2 cut(s) 358, 1009
CviAII CATG 4 cut(s) 235, 722, 736, 1006
CviQI GTAC 2 cut(s) 358, 1009
DdeI CTNAG 2 cut(s) 276, 713
DpnI GATC 5 cut(s) 422, 503, 602, 615, 845
DpnII GATC 5 cut(s) 420, 501, 600, 613, 843
DrdI GACNNNNNNGTC 1 cut(s) 1025
DseDI GACNNNNNNGTC 1 cut(s) 1025
EaeI YGGCCR 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
EciI GGCGGA 5 cut(s) 134, 160, 294, 304, 637
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 2 cut(s) 234, 721
Eco24I GRGCYC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 717
Eco53kI GAGCTC 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 952
EcoICRI GAGCTC 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 717
EcoRII CCWGG 2 cut(s) 183, 686
EcoT14I CCWWGG 2 cut(s) 234, 721
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 2 cut(s) 234, 721
Esp3I CGTCTC 3 cut(s) 235, 262, 1058
FaeI CATG 4 cut(s) 238, 725, 739, 1009
FaiI YATR 7 cut(s) 236, 723, 737, 755, 927, 929, 1007
FaqI GGGAC 3 cut(s) 250, 265, 703
FatI CATG 4 cut(s) 234, 721, 735, 1005
Fnu4HI GCNGC 2 cut(s) 125, 201
FokI GGATG 4 cut(s) 128, 154, 257, 619
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 2 cut(s) 125, 201
GluI GCNGC 2 cut(s) 125, 201
GsaI CCCAGC 1 cut(s) 672
GsuI CTGGAG 1 cut(s) 338
HaeIII GGCC 4 cut(s) 182, 188, 441, 1038
HgaI GACGC 2 cut(s) 729, 1075
Hin1I GRCGYC 2 cut(s) 740, 1067
Hin1II CATG 4 cut(s) 238, 725, 739, 1009
HincII GTYRAC 1 cut(s) 335
HindII GTYRAC 1 cut(s) 335
HphI GGTGA 2 cut(s) 313, 448
Hpy166II GTNNAC 2 cut(s) 335, 1033
Hpy188I TCNGA 7 cut(s) 217, 262, 551, 600, 786, 854, 921
Hpy188III TCNNGA 9 cut(s) 86, 248, 424, 499, 586, 611, 772, 806, 952
Hpy8I GTNNAC 2 cut(s) 335, 1033
Hpy99I CGWCG 9 cut(s) 530, 533, 745, 863, 908, 925, 968, 1031, 1115
HpyAV CCTTC 3 cut(s) 328, 617, 1033
HpyCH4III ACNGT 2 cut(s) 9, 793
HpyCH4IV ACGT 5 cut(s) 228, 495, 858, 923, 966
HpyCH4V TGCA 5 cut(s) 30, 36, 757, 832, 931
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 1066
HpyF3I CTNAG 2 cut(s) 276, 713
HpySE526I ACGT 5 cut(s) 228, 495, 858, 923, 966
Hsp92I GRCGYC 2 cut(s) 740, 1067
Hsp92II CATG 4 cut(s) 238, 725, 739, 1009
KroI GCCGGC 1 cut(s) 870
KroNI GCCGGC 1 cut(s) 872
Kzo9I GATC 5 cut(s) 420, 501, 600, 613, 843
LmnI GCTCC 7 cut(s) 97, 121, 307, 357, 680, 805, 882
LweI GCATC 4 cut(s) 187, 699, 1047, 1066
MaeII ACGT 5 cut(s) 228, 495, 858, 923, 966
MaeIII GTNAC 2 cut(s) 9, 454
MalI GATC 5 cut(s) 422, 503, 602, 615, 845
MboI GATC 5 cut(s) 420, 501, 600, 613, 843
MflI RGATCY 3 cut(s) 420, 600, 613
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 3 cut(s) 480, 574, 1139
MlyI GAGTC 6 cut(s) 238, 272, 305, 589, 1042, 1094
MmeI TCCRAC 3 cut(s) 65, 877, 944
MroNI GCCGGC 1 cut(s) 870
MslI CAYNNNNRTG 1 cut(s) 239
MspA1I CMGCKG 1 cut(s) 668
MspR9I CCNGG 7 cut(s) 179, 185, 411, 511, 678, 688, 1095
MvaI CCWGG 2 cut(s) 185, 688
MvnI CGCG 1 cut(s) 1044
MwoI GCNNNNNNNGC 2 cut(s) 179, 1066
NaeI GCCGGC 1 cut(s) 872
NciI CCSGG 5 cut(s) 179, 411, 511, 678, 1095
NcoI CCATGG 2 cut(s) 234, 721
NdeII GATC 5 cut(s) 420, 501, 600, 613, 843
NgoMIV GCCGGC 1 cut(s) 870
NlaIII CATG 4 cut(s) 238, 725, 739, 1009
NlaIV GGNNCC 6 cut(s) 123, 415, 536, 602, 719, 1122
NmuCI GTSAC 2 cut(s) 9, 454
NspI RCATGY 1 cut(s) 1009
NspV TTCGAA 1 cut(s) 693
PaeR7I CTCGAG 1 cut(s) 952
PciI ACATGT 1 cut(s) 1005
PcsI WCGNNNNNNNCGW 2 cut(s) 804, 1041
PdiI GCCGGC 1 cut(s) 872
PfeI GAWTC 5 cut(s) 82, 218, 552, 781, 836
PflMI CCANNNNNTGG 1 cut(s) 817
PfoI TCCNGGA 1 cut(s) 676
PkrI GCNGC 2 cut(s) 126, 202
PleI GAGTC 6 cut(s) 238, 271, 305, 589, 1042, 1093
PpsI GAGTC 6 cut(s) 238, 271, 305, 589, 1042, 1093
PpuMI RGGWCCY 1 cut(s) 717
PscI ACATGT 1 cut(s) 1005
Psp124BI GAGCTC 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 717
Psp6I CCWGG 2 cut(s) 183, 686
PspFI CCCAGC 1 cut(s) 668
PspGI CCWGG 2 cut(s) 183, 686
PspN4I GGNNCC 6 cut(s) 123, 415, 536, 602, 719, 1122
PspPI GGNCC 2 cut(s) 181, 717
PspPPI RGGWCCY 1 cut(s) 717
PstI CTGCAG 1 cut(s) 38
PsuI RGATCY 3 cut(s) 420, 600, 613
PvuII CAGCTG 1 cut(s) 668
RsaI GTAC 2 cut(s) 359, 1010
RsaNI GTAC 2 cut(s) 358, 1009
RseI CAYNNNNRTG 1 cut(s) 239
SacI GAGCTC 1 cut(s) 255
SatI GCNGC 2 cut(s) 125, 201
Sau3AI GATC 5 cut(s) 420, 501, 600, 613, 843
Sau96I GGNCC 2 cut(s) 181, 717
SchI GAGTC 6 cut(s) 238, 272, 305, 589, 1042, 1094
ScrFI CCNGG 7 cut(s) 179, 185, 411, 511, 678, 688, 1095
SduI GDGCHC 1 cut(s) 255
SfaNI GCATC 4 cut(s) 187, 699, 1047, 1066
SfcI CTRYAG 1 cut(s) 34
Sfr274I CTCGAG 1 cut(s) 952
SfuI TTCGAA 1 cut(s) 693
SinI GGWCC 1 cut(s) 717
SlaI CTCGAG 1 cut(s) 952
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 2 cut(s) 248, 952
SmoI CTYRAG 2 cut(s) 248, 952
Sse9I AATT 3 cut(s) 480, 574, 1139
SsiI CCGC 8 cut(s) 119, 125, 171, 201, 305, 315, 648, 1042
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 7 cut(s) 177, 183, 409, 509, 676, 686, 1093
StyI CCWWGG 2 cut(s) 234, 721
TaaI ACNGT 2 cut(s) 9, 793
TaiI ACGT 5 cut(s) 231, 498, 861, 926, 969
TaqI TCGA 8 cut(s) 555, 567, 693, 750, 779, 807, 842, 953
TasI AATT 3 cut(s) 480, 574, 1139
TatI WGTACW 1 cut(s) 1008
TauI GCSGC 2 cut(s) 127, 203
TfiI GAWTC 5 cut(s) 82, 218, 552, 781, 836
TscAI CASTG 2 cut(s) 12, 834
TseFI GTSAC 2 cut(s) 9, 454
Tsp45I GTSAC 2 cut(s) 9, 454
TspDTI ATGAA 3 cut(s) 127, 569, 621
TspGWI ACGGA 2 cut(s) 442, 855
TspRI CASTG 2 cut(s) 12, 834
Van91I CCANNNNNTGG 1 cut(s) 817
VpaK11BI GGWCC 1 cut(s) 717
XapI RAATTY 1 cut(s) 1139
XceI RCATGY 1 cut(s) 1009
XhoI CTCGAG 1 cut(s) 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.