Rh4AG381600

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
68748079 .. 68749725
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG381600.1

Sequence Viewer

Length: 1221 bp
ATGGCTTCTTCTTCTTCAACCTCACTCTTCTTCTTCTTCTCTCTCCTCCTCACCTCTCTCCTCTCCTTCTCCTCCGCCCAAACCATCACCAACGCCGCCGAGATCCTCTCCGATTCCGGCTACAAATCCATGTCCCTCGCCCTCGACCTCGCCTTTCACTCCATCACCTCCCAGTCACCGTCGCTCACCGTCTTCGCTCCGGCCGACGCCGCCTTCTCCAACTCCGGCCACCCCACTCTCAATCTCCTCCGCTACCACCTCCTCCCCATCGCTTTCCCTCTCCGATCACTCAAGTCCCTCCCGTTCGGCGCCAAGATCGCCACTCTGCTCGACGGCCACTCTCTCACCGTCACCACTCTGCCGTCCGACCGCCTCGTCTCGCTCAACAACGTCACCGTCACGGCGTCCCCAATTTTCGACGACGGGTCGTTGATCATCTTCGGAACCAACAAATTCTTCGACCCGTATTTCCGGATCTCGGGTCCGATTCGGAGCTACAGCCCCAAGAATCTCTGCTGCTTGACGCCGCGAAACCCTAACGAAGCTATGGCGGTGGAAACGGCGGCGCATTACCCGTTCAGTGAAGCAAGCAAGGTGCTGAAATTGAAAGGCTGCTCTGTTATGGCTTCGTTTCTTGAAATGCAATTCCATGGGTTTCTCAAGTACCAGACCATGTTGACCGTCTTCGCTCCCGTTGACCAAGCCATGGTGCCCCGAATCGGAGATCTGAGCGGGTACTCGTCGATCTTCCGCCGCCACGTGGTCCCCTGCAAGCTTTCTTGGAACGATTTGGTGAGTCTCGACGACGGCACTGTGTTGAGGACTAATCTGCAAGGGTTTATGATCAACATCACTCGATACGACGGCGTTTTGGTGCTCAATGGGGTCCCGGTGATAATGCCGGAGATGTATCACAACGGCTGGCTTGTGGTTCACGGAATCAGTGAGGTTCTTGAGTTCCCAGAGAGCCCACCGGAGCAAGTGGTGGATGTGGTGGCTCCTTCACCTGTCTCTGAGGCAGATGGTCACAGCTCCAGTGAGGATGAGAGTGCCGGAACAGAGCCTTCGGAGCCAGTAATAGAGGTGCCTTCTTCACCGGAATTCGATAGCAGCGATTCGGAGGAATTAGATACCGGCGATTCTGAGCTATTTGCTAACATGTCTTCCGAGGATGAAGGAGCCATTTCACACAGGCGCTTCTTTGTTTACAGGCCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

406

Amino Acids

44.22

Weight (kDa)

4.83

Isoelectric Point (pI)

58.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 206 - 318 1.8e-08 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000614)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 374
AccB1I GGYRCC 3 cut(s) 308, 709, 1084
AccB7I CCANNNNNTGG 1 cut(s) 706
AccBSI CCGCTC 1 cut(s) 732
AccII CGCG 1 cut(s) 529
AccIII TCCGGA 1 cut(s) 471
AclWI GGATC 2 cut(s) 97, 482
AcoI YGGCCR 3 cut(s) 201, 226, 334
AcsI RAATTY 2 cut(s) 452, 1100
AcvI CACGTG 1 cut(s) 760
AcyI GRCGYC 4 cut(s) 207, 309, 404, 524
AfaI GTAC 2 cut(s) 665, 737
AfiI CCNNNNNNNGG 4 cut(s) 478, 706, 719, 760
AflIII ACRYGT 1 cut(s) 1158
AgsI TTSAA 3 cut(s) 18, 607, 638
AhdI GACNNNNNGTC 1 cut(s) 424
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
AluBI AGCT 5 cut(s) 495, 545, 775, 1032, 1147
AluI AGCT 5 cut(s) 495, 545, 775, 1032, 1147
Alw21I GWGCWC 1 cut(s) 879
Alw26I GTCTC 3 cut(s) 382, 803, 1015
AlwI GGATC 2 cut(s) 97, 482
Ama87I CYCGRG 1 cut(s) 478
Aor13HI TCCGGA 1 cut(s) 471
AoxI GGCC 4 cut(s) 201, 226, 334, 1211
ApeKI GCWGC 3 cut(s) 516, 612, 1110
ApoI RAATTY 2 cut(s) 452, 1100
AspLEI GCGC 3 cut(s) 311, 568, 1197
AspS9I GGNCC 3 cut(s) 482, 763, 886
AsuC2I CCSGG 1 cut(s) 890
AvaI CYCGRG 1 cut(s) 478
AvaII GGWCC 3 cut(s) 482, 763, 886
BaeGI GKGCMC 1 cut(s) 714
BanI GGYRCC 3 cut(s) 308, 709, 1084
BanII GRGCYC 1 cut(s) 971
BbrPI CACGTG 1 cut(s) 760
BbsI GAAGAC 3 cut(s) 184, 676, 1155
Bbv12I GWGCWC 1 cut(s) 879
BbvI GCAGC 3 cut(s) 503, 599, 1122
BccI CCATC 4 cut(s) 92, 170, 275, 1016
BceAI ACGGC 7 cut(s) 346, 349, 417, 576, 823, 880, 934
BclI TGATCA 2 cut(s) 432, 843
BcnI CCSGG 1 cut(s) 890
BcoDI GTCTC 3 cut(s) 382, 803, 1015
BfmI CTRYAG 1 cut(s) 496
BfoI RGCGCY 2 cut(s) 312, 1198
BglII AGATCT 1 cut(s) 724
BisI GCNGC 8 cut(s) 96, 210, 517, 527, 564, 613, 754, 1111
BlsI GCNGC 8 cut(s) 97, 211, 518, 528, 565, 614, 755, 1112
Bme1390I CCNGG 1 cut(s) 890
Bme18I GGWCC 3 cut(s) 482, 763, 886
BmeRI GACNNNNNGTC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 478
BmgT120I GGNCC 3 cut(s) 482, 763, 886
BmrFI CCNGG 1 cut(s) 890
BmrI ACTGGG 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 166
BpiI GAAGAC 3 cut(s) 184, 676, 1155
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BpmI CTGGAG 1 cut(s) 1018
BpuEI CTTGAG 3 cut(s) 275, 644, 974
BpuMI CCSGG 1 cut(s) 890
BsaAI YACGTR 1 cut(s) 760
BsaBI GATNNNNATC 1 cut(s) 848
BsaHI GRCGYC 4 cut(s) 207, 309, 404, 524
BsaJI CCNNGG 3 cut(s) 649, 705, 1167
BsaWI WCCGGW 3 cut(s) 471, 973, 1096
Bsc4I CCNNNNNNNGG 4 cut(s) 478, 706, 719, 760
Bse118I RCCGGY 1 cut(s) 1133
Bse1I ACTGG 3 cut(s) 172, 1035, 1073
Bse8I GATNNNNATC 1 cut(s) 848
BseAI TCCGGA 1 cut(s) 471
BseDI CCNNGG 3 cut(s) 649, 705, 1167
BseGI GGATG 3 cut(s) 994, 1048, 1177
BseJI GATNNNNATC 1 cut(s) 848
BseLI CCNNNNNNNGG 4 cut(s) 478, 706, 719, 760
BseMII CTCAG 3 cut(s) 719, 1005, 1134
BseNI ACTGG 3 cut(s) 172, 1035, 1073
BseRI GAGGAG 6 cut(s) 35, 38, 50, 61, 236, 251
BseSI GKGCMC 1 cut(s) 714
BseX3I CGGCCG 1 cut(s) 201
BseXI GCAGC 3 cut(s) 503, 599, 1122
Bsh1236I CGCG 1 cut(s) 529
Bsh1285I CGRYCG 2 cut(s) 204, 370
BshFI GGCC 4 cut(s) 203, 228, 336, 1213
BshNI GGYRCC 3 cut(s) 308, 709, 1084
BsiEI CGRYCG 2 cut(s) 204, 370
BsiHKAI GWGCWC 1 cut(s) 879
BsiHKCI CYCGRG 1 cut(s) 478
BslFI GGGAC 5 cut(s) 118, 280, 391, 749, 872
BslI CCNNNNNNNGG 4 cut(s) 478, 706, 719, 760
BsmAI GTCTC 3 cut(s) 382, 803, 1015
BsmBI CGTCTC 1 cut(s) 382
BsmFI GGGAC 5 cut(s) 118, 280, 391, 749, 872
BsnI GGCC 4 cut(s) 203, 228, 336, 1213
BsoBI CYCGRG 1 cut(s) 478
Bsp1286I GDGCHC 3 cut(s) 714, 879, 971
Bsp13I TCCGGA 1 cut(s) 471
Bsp143I GATC 8 cut(s) 102, 284, 315, 432, 474, 724, 744, 843
Bsp19I CCATGG 2 cut(s) 649, 705
BspANI GGCC 4 cut(s) 203, 228, 336, 1213
BspCNI CTCAG 3 cut(s) 720, 1006, 1135
BspEI TCCGGA 1 cut(s) 471
BspFNI CGCG 1 cut(s) 529
BspPI GGATC 2 cut(s) 97, 482
BspT107I GGYRCC 3 cut(s) 308, 709, 1084
BsrBI CCGCTC 1 cut(s) 732
BsrFI RCCGGY 1 cut(s) 1133
BsrI ACTGG 3 cut(s) 172, 1035, 1073
BssAI RCCGGY 1 cut(s) 1133
BssECI CCNNGG 3 cut(s) 649, 705, 1167
BssMI GATC 8 cut(s) 102, 284, 315, 432, 474, 724, 744, 843
BssNI GRCGYC 4 cut(s) 207, 309, 404, 524
BssT1I CCWWGG 2 cut(s) 649, 705
Bst4CI ACNGT 6 cut(s) 180, 190, 349, 397, 682, 814
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 4 cut(s) 207, 309, 404, 524
BstBAI YACGTR 1 cut(s) 760
BstC8I GCNNGC 3 cut(s) 589, 773, 923
BstDEI CTNAG 3 cut(s) 728, 1014, 1143
BstDSI CCRYGG 2 cut(s) 649, 705
BstF5I GGATG 3 cut(s) 994, 1048, 1177
BstFNI CGCG 1 cut(s) 529
BstH2I RGCGCY 2 cut(s) 312, 1198
BstHHI GCGC 3 cut(s) 311, 568, 1197
BstKTI GATC 8 cut(s) 105, 287, 318, 435, 477, 727, 747, 846
BstMAI GTCTC 3 cut(s) 382, 803, 1015
BstMBI GATC 8 cut(s) 102, 284, 315, 432, 474, 724, 744, 843
BstMCI CGRYCG 2 cut(s) 204, 370
BstMWI GCNNNNNNNGC 3 cut(s) 209, 317, 1069
BstNSI RCATGY 1 cut(s) 1162
BstSCI CCNGG 1 cut(s) 888
BstSFI CTRYAG 1 cut(s) 496
BstSLI GKGCMC 1 cut(s) 714
BstUI CGCG 1 cut(s) 529
BstV1I GCAGC 3 cut(s) 503, 599, 1122
BstV2I GAAGAC 3 cut(s) 184, 676, 1155
BstX2I RGATCY 3 cut(s) 102, 474, 724
BstYI RGATCY 3 cut(s) 102, 474, 724
BstZI CGGCCG 1 cut(s) 201
BsuRI GGCC 4 cut(s) 203, 228, 336, 1213
BtgI CCRYGG 2 cut(s) 649, 705
BtgZI GCGATG 1 cut(s) 253
BtsCI GGATG 3 cut(s) 994, 1048, 1177
BtsIMutI CAGTG 4 cut(s) 586, 810, 949, 1042
Cac8I GCNNGC 3 cut(s) 589, 773, 923
CfoI GCGC 3 cut(s) 311, 568, 1197
Cfr10I RCCGGY 1 cut(s) 1133
Cfr13I GGNCC 3 cut(s) 482, 763, 886
CseI GACGC 3 cut(s) 215, 393, 532
Csp6I GTAC 2 cut(s) 664, 736
CviAII CATG 5 cut(s) 130, 650, 673, 706, 1159
CviQI GTAC 2 cut(s) 664, 736
DdeI CTNAG 3 cut(s) 728, 1014, 1143
DinI GGCGCC 1 cut(s) 310
DpnI GATC 8 cut(s) 104, 286, 317, 434, 476, 726, 746, 845
DpnII GATC 8 cut(s) 102, 284, 315, 432, 474, 724, 744, 843
DrdI GACNNNNNNGTC 1 cut(s) 374
DriI GACNNNNNGTC 1 cut(s) 424
DseDI GACNNNNNNGTC 1 cut(s) 374
EaeI YGGCCR 3 cut(s) 201, 226, 334
EagI CGGCCG 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 32
Eam1105I GACNNNNNGTC 1 cut(s) 424
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 2 cut(s) 64, 740
EclXI CGGCCG 1 cut(s) 201
Eco130I CCWWGG 2 cut(s) 649, 705
Eco147I AGGCCT 1 cut(s) 1213
Eco24I GRGCYC 1 cut(s) 971
Eco47I GGWCC 3 cut(s) 482, 763, 886
Eco52I CGGCCG 1 cut(s) 201
Eco72I CACGTG 1 cut(s) 760
Eco88I CYCGRG 1 cut(s) 478
EcoO109I RGGNCCY 1 cut(s) 886
EcoRI GAATTC 1 cut(s) 1100
EcoT14I CCWWGG 2 cut(s) 649, 705
EcoT38I GRGCYC 1 cut(s) 971
EgeI GGCGCC 1 cut(s) 310
EheI GGCGCC 1 cut(s) 310
ErhI CCWWGG 2 cut(s) 649, 705
Esp3I CGTCTC 1 cut(s) 382
FaeI CATG 5 cut(s) 133, 653, 676, 709, 1162
FaiI YATR 9 cut(s) 131, 548, 623, 651, 674, 707, 842, 1160, 1219
FaqI GGGAC 5 cut(s) 118, 280, 391, 749, 872
FatI CATG 5 cut(s) 129, 649, 672, 705, 1158
FauI CCCGC 1 cut(s) 725
FbaI TGATCA 2 cut(s) 432, 843
Fnu4HI GCNGC 8 cut(s) 96, 210, 517, 527, 564, 613, 754, 1111
FokI GGATG 3 cut(s) 1001, 1055, 1184
FriOI GRGCYC 1 cut(s) 971
Fsp4HI GCNGC 8 cut(s) 96, 210, 517, 527, 564, 613, 754, 1111
GlaI GCGC 3 cut(s) 310, 567, 1196
GluI GCNGC 8 cut(s) 96, 210, 517, 527, 564, 613, 754, 1111
GsuI CTGGAG 1 cut(s) 1018
HaeII RGCGCY 2 cut(s) 312, 1198
HaeIII GGCC 4 cut(s) 203, 228, 336, 1213
HgaI GACGC 3 cut(s) 215, 393, 532
HhaI GCGC 3 cut(s) 311, 568, 1197
Hin1I GRCGYC 4 cut(s) 207, 309, 404, 524
Hin1II CATG 5 cut(s) 133, 653, 676, 709, 1162
Hin6I GCGC 3 cut(s) 309, 566, 1195
HinP1I GCGC 3 cut(s) 309, 566, 1195
HincII GTYRAC 2 cut(s) 678, 697
HindII GTYRAC 2 cut(s) 678, 697
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 8 cut(s) 113, 487, 508, 717, 796, 939, 1115, 1139
Hpy166II GTNNAC 4 cut(s) 678, 697, 934, 1207
Hpy188III TCNNGA 4 cut(s) 472, 635, 800, 953
Hpy8I GTNNAC 4 cut(s) 678, 697, 934, 1207
Hpy99I CGWCG 9 cut(s) 184, 209, 335, 422, 425, 745, 806, 809, 866
HpyAV CCTTC 6 cut(s) 76, 223, 1011, 1074, 1098, 1169
HpyCH4III ACNGT 6 cut(s) 180, 190, 349, 397, 682, 814
HpyCH4IV ACGT 2 cut(s) 390, 759
HpyCH4V TGCA 3 cut(s) 643, 771, 832
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 317, 1069
HpyF3I CTNAG 3 cut(s) 728, 1014, 1143
HpySE526I ACGT 2 cut(s) 390, 759
Hsp92I GRCGYC 4 cut(s) 207, 309, 404, 524
Hsp92II CATG 5 cut(s) 133, 653, 676, 709, 1162
HspAI GCGC 3 cut(s) 309, 566, 1195
KasI GGCGCC 1 cut(s) 308
KflI GGGWCCC 1 cut(s) 886
Kpn2I TCCGGA 1 cut(s) 471
Ksp22I TGATCA 2 cut(s) 432, 843
Kzo9I GATC 8 cut(s) 102, 284, 315, 432, 474, 724, 744, 843
LmnI GCTCC 8 cut(s) 202, 492, 694, 976, 1003, 1037, 1069, 1178
Lsp1109I GCAGC 3 cut(s) 503, 599, 1122
MaeII ACGT 2 cut(s) 390, 759
MaeIII GTNAC 5 cut(s) 174, 349, 391, 397, 1025
MalI GATC 8 cut(s) 104, 286, 317, 434, 476, 726, 746, 845
MbiI CCGCTC 1 cut(s) 732
MboI GATC 8 cut(s) 102, 284, 315, 432, 474, 724, 744, 843
MflI RGATCY 3 cut(s) 102, 474, 724
MhlI GDGCHC 3 cut(s) 714, 879, 971
MluCI AATT 6 cut(s) 411, 452, 602, 644, 1100, 1124
Mly113I GGCGCC 1 cut(s) 309
MlyI GAGTC 1 cut(s) 805
MmeI TCCRAC 2 cut(s) 243, 390
MroI TCCGGA 1 cut(s) 471
MspR9I CCNGG 1 cut(s) 890
MvnI CGCG 1 cut(s) 529
MwoI GCNNNNNNNGC 3 cut(s) 209, 317, 1069
NarI GGCGCC 1 cut(s) 309
NciI CCSGG 1 cut(s) 890
NcoI CCATGG 2 cut(s) 649, 705
NdeII GATC 8 cut(s) 102, 284, 315, 432, 474, 724, 744, 843
NlaIII CATG 5 cut(s) 133, 653, 676, 709, 1162
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 5 cut(s) 174, 349, 391, 397, 1025
NspI RCATGY 1 cut(s) 1162
PceI AGGCCT 1 cut(s) 1213
PciI ACATGT 1 cut(s) 1158
PcsI WCGNNNNNNNCGW 2 cut(s) 201, 1110
PfeI GAWTC 7 cut(s) 113, 487, 508, 717, 939, 1115, 1139
PflMI CCANNNNNTGG 1 cut(s) 706
PkrI GCNGC 8 cut(s) 97, 211, 518, 528, 565, 614, 755, 1112
PleI GAGTC 1 cut(s) 804
PluTI GGCGCC 1 cut(s) 312
PmaCI CACGTG 1 cut(s) 760
PmlI CACGTG 1 cut(s) 760
PpsI GAGTC 1 cut(s) 804
Ppu21I YACGTR 1 cut(s) 760
PpuMI RGGWCCY 1 cut(s) 886
PscI ACATGT 1 cut(s) 1158
Psp5II RGGWCCY 1 cut(s) 886
PspCI CACGTG 1 cut(s) 760
PspPI GGNCC 3 cut(s) 482, 763, 886
PspPPI RGGWCCY 1 cut(s) 886
PsuI RGATCY 3 cut(s) 102, 474, 724
RsaI GTAC 2 cut(s) 665, 737
RsaNI GTAC 2 cut(s) 664, 736
SatI GCNGC 8 cut(s) 96, 210, 517, 527, 564, 613, 754, 1111
Sau3AI GATC 8 cut(s) 102, 284, 315, 432, 474, 724, 744, 843
Sau96I GGNCC 3 cut(s) 482, 763, 886
SchI GAGTC 1 cut(s) 805
ScrFI CCNGG 1 cut(s) 890
SduI GDGCHC 3 cut(s) 714, 879, 971
SfcI CTRYAG 1 cut(s) 496
SfoI GGCGCC 1 cut(s) 310
SinI GGWCC 3 cut(s) 482, 763, 886
SmlI CTYRAG 3 cut(s) 290, 659, 953
SmoI CTYRAG 3 cut(s) 290, 659, 953
Sse9I AATT 6 cut(s) 411, 452, 602, 644, 1100, 1124
SseBI AGGCCT 1 cut(s) 1213
SspDI GGCGCC 1 cut(s) 308
StuI AGGCCT 1 cut(s) 1213
StyD4I CCNGG 1 cut(s) 888
StyI CCWWGG 2 cut(s) 649, 705
TaaI ACNGT 6 cut(s) 180, 190, 349, 397, 682, 814
TaiI ACGT 2 cut(s) 393, 762
TaqI TCGA 8 cut(s) 144, 330, 417, 459, 743, 801, 856, 1104
TasI AATT 6 cut(s) 411, 452, 602, 644, 1100, 1124
TauI GCSGC 5 cut(s) 98, 212, 529, 566, 756
TfiI GAWTC 7 cut(s) 113, 487, 508, 717, 939, 1115, 1139
TscAI CASTG 4 cut(s) 586, 817, 949, 1042
TseFI GTSAC 5 cut(s) 174, 349, 391, 397, 1025
TseI GCWGC 3 cut(s) 516, 612, 1110
Tsp45I GTSAC 5 cut(s) 174, 349, 391, 397, 1025
TspDTI ATGAA 2 cut(s) 1188, 1206
TspGWI ACGGA 1 cut(s) 951
TspRI CASTG 4 cut(s) 586, 817, 949, 1042
Van91I CCANNNNNTGG 1 cut(s) 706
VpaK11BI GGWCC 3 cut(s) 482, 763, 886
XapI RAATTY 2 cut(s) 452, 1100
XceI RCATGY 1 cut(s) 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.