Rh5BG280900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000614
Physical Location & Seq
Forward (+)
35469806 .. 35470030
225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG280900.1

Sequence Viewer

Length: 225 bp
ATGTCGACGTTCGGGTCTGGACGACCAGTCGATGTTCATATAAGCCGTCGAATGCTCTTGGAGGCTAAAGAAGCTCCAGTGCCAGCTCCGATTGCTGCAATTTCGGGTCAGCCACATCAGGCGTTCGGGTTGGTTGCAGATCTGCTAAGGAACGACAAAGCCTCCATGGATGGACGCCGTCATCCAGTCCCCAACGCCGTCCAATCCCCAACGCCTAGCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

7.84

Weight (kDa)

9.95

Isoelectric Point (pI)

86.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AccI GTMKAC 1 cut(s) 5
AcyI GRCGYC 1 cut(s) 175
AhdI GACNNNNNGTC 1 cut(s) 26
AluBI AGCT 3 cut(s) 74, 86, 219
AluI AGCT 3 cut(s) 74, 86, 219
ApeKI GCWGC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 164
BceAI ACGGC 3 cut(s) 30, 162, 182
BfaI CTAG 1 cut(s) 216
BglII AGATCT 1 cut(s) 139
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmeRI GACNNNNNGTC 1 cut(s) 26
BpmI CTGGAG 1 cut(s) 60
Bpu10I CCTNAGC 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 175
BsaJI CCNNGG 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bse1I ACTGG 3 cut(s) 26, 77, 185
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 175, 181
BseNI ACTGG 3 cut(s) 26, 77, 185
BseXI GCAGC 1 cut(s) 82
BslFI GGGAC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 173
BsmI GAATGC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 139
Bsp19I CCATGG 1 cut(s) 165
BsrI ACTGG 3 cut(s) 26, 77, 185
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 1 cut(s) 139
BssNI GRCGYC 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 146
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 2 cut(s) 175, 181
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 2 cut(s) 71, 92
BstV1I GCAGC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 2 cut(s) 175, 181
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 84
CseI GACGC 1 cut(s) 183
CviAII CATG 1 cut(s) 166
CviJI RGCY 7 cut(s) 45, 65, 74, 86, 112, 161, 219
CviKI_1 RGCY 7 cut(s) 45, 65, 74, 86, 112, 161, 219
DdeI CTNAG 1 cut(s) 146
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
DrdI GACNNNNNNGTC 1 cut(s) 13
DriI GACNNNNNGTC 1 cut(s) 26
DseDI GACNNNNNNGTC 1 cut(s) 13
Eam1105I GACNNNNNGTC 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 1 cut(s) 169
FaiI YATR 3 cut(s) 39, 41, 167
FaqI GGGAC 1 cut(s) 173
FatI CATG 1 cut(s) 165
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 2 cut(s) 168, 182
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 216
GluI GCNGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 60
HgaI GACGC 1 cut(s) 183
Hin1I GRCGYC 1 cut(s) 175
Hin1II CATG 1 cut(s) 169
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 2 cut(s) 18, 222
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 2 cut(s) 10, 51
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 2 cut(s) 98, 137
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 92
HpyF3I CTNAG 1 cut(s) 146
HpySE526I ACGT 1 cut(s) 8
Hsp92I GRCGYC 1 cut(s) 175
Hsp92II CATG 1 cut(s) 169
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 3 cut(s) 79, 91, 224
LpnPI CCDG 6 cut(s) 3, 39, 90, 96, 104, 198
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 8
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MflI RGATCY 1 cut(s) 139
MluCI AATT 1 cut(s) 99
MnlI CCTC 2 cut(s) 55, 172
Mva1269I GAATGC 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 71, 92
NcoI CCATGG 1 cut(s) 165
NdeII GATC 1 cut(s) 139
NlaIII CATG 1 cut(s) 169
PctI GAATGC 1 cut(s) 57
PflFI GACNNNGTC 1 cut(s) 177
PkrI GCNGC 1 cut(s) 97
PsuI RGATCY 1 cut(s) 139
PsyI GACNNNGTC 1 cut(s) 177
SalI GTCGAC 1 cut(s) 4
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 139
SetI ASST 4 cut(s) 11, 76, 88, 221
Sse9I AATT 1 cut(s) 99
SspMI CTAG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 165
TaiI ACGT 1 cut(s) 11
TaqI TCGA 3 cut(s) 5, 30, 49
TasI AATT 1 cut(s) 99
TscAI CASTG 1 cut(s) 84
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 26
TspRI CASTG 1 cut(s) 84
Tth111I GACNNNGTC 1 cut(s) 177
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.