Rh2DG690400

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000614
Physical Location & Seq
Reverse (-)
90737991 .. 90738224
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG690400.1

Sequence Viewer

Length: 234 bp
ATGGGTGACGTACCTGTGCTCAATGATGTTCCGGTGGCCGATCAGGACCTCTACCAGAGCCGCTTCCTGGTTGTTCATGGCGTCAATCACTTGCTGACGTCACAGAAGCAGATGGTGAGGCAAGAAGAAGACCCGGTTGGAGATCAAGAAGATGGTGGTGCTGGTTTCACTGATGGGTTTGTTGCCAATGTTGCTGATCAGATCAACCCTCAAGGTTTTGATGACTATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

77

Amino Acids

8.46

Weight (kDa)

4.05

Isoelectric Point (pI)

56.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 101
AciI CCGC 1 cut(s) 61
AcoI YGGCCR 1 cut(s) 36
AcyI GRCGYC 2 cut(s) 81, 98
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 67
AjnI CCWGG 1 cut(s) 66
AjuI GAANNNNNNNTTGG 2 cut(s) 120, 152
Alw21I GWGCWC 1 cut(s) 21
AoxI GGCC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 17, 127
AvaII GGWCC 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 21
BccI CCATC 3 cut(s) 106, 146, 167
BciT130I CCWGG 1 cut(s) 68
BclI TGATCA 1 cut(s) 196
BcnI CCSGG 1 cut(s) 134
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
Bme1390I CCNGG 2 cut(s) 68, 134
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 68, 134
BpiI GAAGAC 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 225
BsaHI GRCGYC 2 cut(s) 81, 98
BsaWI WCCGGW 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 1 cut(s) 68
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 67
BshFI GGCC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 2 cut(s) 32, 134
BslI CCNNNNNNNGG 1 cut(s) 67
BsnI GGCC 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 4 cut(s) 40, 142, 196, 201
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 38
BssMI GATC 4 cut(s) 40, 142, 196, 201
BssNI GRCGYC 2 cut(s) 81, 98
Bst2UI CCWGG 1 cut(s) 68
BstACI GRCGYC 2 cut(s) 81, 98
BstKTI GATC 4 cut(s) 43, 145, 199, 204
BstMBI GATC 4 cut(s) 40, 142, 196, 201
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 66, 132
BstV2I GAAGAC 1 cut(s) 135
BsuRI GGCC 1 cut(s) 38
BtsIMutI CAGTG 2 cut(s) 168, 229
Cfr13I GGNCC 1 cut(s) 46
CseI GACGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 11
CviAII CATG 1 cut(s) 77
CviJI RGCY 2 cut(s) 38, 60
CviKI_1 RGCY 2 cut(s) 38, 60
CviQI GTAC 1 cut(s) 11
DpnI GATC 4 cut(s) 42, 144, 198, 203
DpnII GATC 4 cut(s) 40, 142, 196, 201
EaeI YGGCCR 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 66
FaeI CATG 1 cut(s) 80
FaiI YATR 1 cut(s) 78
FatI CATG 1 cut(s) 76
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 61
Fsp4HI GCNGC 1 cut(s) 61
GluI GCNGC 1 cut(s) 61
HaeIII GGCC 1 cut(s) 38
HapII CCGG 2 cut(s) 32, 134
HgaI GACGC 1 cut(s) 70
Hin1I GRCGYC 2 cut(s) 81, 98
Hin1II CATG 1 cut(s) 80
HpaII CCGG 2 cut(s) 32, 134
HphI GGTGA 2 cut(s) 17, 127
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 2 cut(s) 44, 146
HpyCH4IV ACGT 2 cut(s) 9, 98
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpySE526I ACGT 2 cut(s) 9, 98
Hsp92I GRCGYC 2 cut(s) 81, 98
Hsp92II CATG 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 4 cut(s) 40, 142, 196, 201
LpnPI CCDG 8 cut(s) 27, 29, 45, 53, 68, 80, 147, 147
MaeII ACGT 2 cut(s) 9, 98
MaeIII GTNAC 2 cut(s) 5, 99
MalI GATC 4 cut(s) 42, 144, 198, 203
MboI GATC 4 cut(s) 40, 142, 196, 201
MboII GAAGA 3 cut(s) 137, 140, 161
MhlI GDGCHC 1 cut(s) 21
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 3 cut(s) 59, 111, 219
MspI CCGG 2 cut(s) 32, 134
MspR9I CCNGG 2 cut(s) 68, 134
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 191
NciI CCSGG 1 cut(s) 134
NdeII GATC 4 cut(s) 40, 142, 196, 201
NlaIII CATG 1 cut(s) 80
NmuCI GTSAC 2 cut(s) 5, 99
PkrI GCNGC 1 cut(s) 62
PpuMI RGGWCCY 1 cut(s) 46
Psp5II RGGWCCY 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspPI GGNCC 1 cut(s) 46
PspPPI RGGWCCY 1 cut(s) 46
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 4 cut(s) 40, 142, 196, 201
Sau96I GGNCC 1 cut(s) 46
ScrFI CCNGG 2 cut(s) 68, 134
SduI GDGCHC 1 cut(s) 21
SetI ASST 5 cut(s) 12, 16, 51, 101, 217
SinI GGWCC 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
SsiI CCGC 1 cut(s) 61
StyD4I CCNGG 2 cut(s) 66, 132
TaiI ACGT 2 cut(s) 12, 101
TauI GCSGC 1 cut(s) 63
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 2 cut(s) 5, 99
Tsp45I GTSAC 2 cut(s) 5, 99
TspDTI ATGAA 1 cut(s) 65
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 46
ZraI GACGTC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.