Rh3BG272200

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000614
Physical Location & Seq
Reverse (-)
26550221 .. 26551354
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG272200.1

Sequence Viewer

Length: 453 bp
ATGTCTTCTTCACAAATCCAAACTCTTCTCCCGAATTATACACTGATTTTGACTTCATCTCCAGCTTTAAGAGGCTATTCGTCAATCAATGATGTTCGGGTCAACCCGAATTTCTTTTTGGACAATGGGTCGATGATGATATACACCATCGATCGGTTCTTTAACTTGTCTTTCTTGGAGGCTGATGAAGCTTCGGCGCCGGCTCCGATTGCTGGAGTTTCGGGTGAAGTCCCTGTGCTCAATGATATTCCAGTGGCCGATCAGGACCTGTACCAGAGCTTCTTTCTGGTTATTGATGGCCGCAATCGCTTGCTGACATCACAGCAACAAATGGTGAGGCAAGAACAAGACCCAGTTGATCAAGAAGATGGTGGTGCTGATTTCACTAATGGGTCTGAAGACATGTCAAATGGTTGGTTCAACTTGAGAAAATCTGCATTCGTAAAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

150

Amino Acids

16.67

Weight (kDa)

4.15

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 196
AciI CCGC 1 cut(s) 301
AcoI YGGCCR 2 cut(s) 255, 298
AcsI RAATTY 1 cut(s) 109
AcuI CTGAAG 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 197
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 2 cut(s) 153, 212
AflIII ACRYGT 1 cut(s) 402
AgsI TTSAA 1 cut(s) 421
AhdI GACNNNNNGTC 1 cut(s) 127
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 3 cut(s) 65, 191, 279
AluI AGCT 3 cut(s) 65, 191, 279
Alw21I GWGCWC 1 cut(s) 240
AlwNI CAGNNNCTG 1 cut(s) 268
AoxI GGCC 2 cut(s) 255, 298
ApoI RAATTY 1 cut(s) 109
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 265
AsuHPI GGTGA 2 cut(s) 236, 346
AvaII GGWCC 1 cut(s) 265
BanI GGYRCC 1 cut(s) 196
BarI GAAGNNNNNNTAC 2 cut(s) 263, 295
BbsI GAAGAC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 240
BccI CCATC 3 cut(s) 155, 290, 362
BclI TGATCA 1 cut(s) 358
BfoI RGCGCY 1 cut(s) 200
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 265
BmeRI GACNNNNNGTC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 2 cut(s) 198, 204
BmrI ACTGGG 1 cut(s) 347
BmuI ACTGGG 1 cut(s) 347
BpiI GAAGAC 1 cut(s) 405
BpmI CTGGAG 2 cut(s) 45, 234
BpuEI CTTGAG 1 cut(s) 445
Bsa29I ATCGAT 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 197
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 212
Bse118I RCCGGY 1 cut(s) 199
Bse1I ACTGG 2 cut(s) 251, 353
BseCI ATCGAT 1 cut(s) 150
BseLI CCNNNNNNNGG 2 cut(s) 153, 212
BseNI ACTGG 2 cut(s) 251, 353
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 2 cut(s) 257, 300
BshNI GGYRCC 1 cut(s) 196
BshVI ATCGAT 1 cut(s) 150
BsiEI CGRYCG 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 2 cut(s) 153, 212
BsmFI GGGAC 1 cut(s) 215
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 2 cut(s) 257, 300
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 3 cut(s) 151, 259, 358
BspACI CCGC 1 cut(s) 301
BspANI GGCC 2 cut(s) 257, 300
BspDI ATCGAT 1 cut(s) 150
BspLI GGNNCC 2 cut(s) 198, 204
BspT107I GGYRCC 1 cut(s) 196
BsrFI RCCGGY 1 cut(s) 199
BsrI ACTGG 2 cut(s) 251, 353
BssAI RCCGGY 1 cut(s) 199
BssMI GATC 3 cut(s) 151, 259, 358
BssNI GRCGYC 1 cut(s) 197
Bst6I CTCTTC 1 cut(s) 30
BstACI GRCGYC 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 201, 311
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 3 cut(s) 154, 262, 361
BstMBI GATC 3 cut(s) 151, 259, 358
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 3 cut(s) 188, 209, 306
BstNSI RCATGY 1 cut(s) 406
BstV2I GAAGAC 1 cut(s) 405
Bsu15I ATCGAT 1 cut(s) 150
BsuRI GGCC 2 cut(s) 257, 300
BsuTUI ATCGAT 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 41, 258
Cac8I GCNNGC 2 cut(s) 201, 311
CaiI CAGNNNCTG 1 cut(s) 268
CfoI GCGC 1 cut(s) 199
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 265
ClaI ATCGAT 1 cut(s) 150
Csp6I GTAC 1 cut(s) 271
CviAII CATG 1 cut(s) 403
CviJI RGCY 8 cut(s) 65, 75, 182, 191, 203, 257, 279, 300
CviKI_1 RGCY 8 cut(s) 65, 75, 182, 191, 203, 257, 279, 300
CviQI GTAC 1 cut(s) 271
DinI GGCGCC 1 cut(s) 198
DpnI GATC 3 cut(s) 153, 261, 360
DpnII GATC 3 cut(s) 151, 259, 358
DriI GACNNNNNGTC 1 cut(s) 127
EaeI YGGCCR 2 cut(s) 255, 298
Eam1104I CTCTTC 1 cut(s) 30
Eam1105I GACNNNNNGTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 417
EcoO109I RGGNCCY 1 cut(s) 265
EgeI GGCGCC 1 cut(s) 198
EheI GGCGCC 1 cut(s) 198
FaeI CATG 1 cut(s) 406
FaiI YATR 4 cut(s) 39, 142, 404, 451
FaqI GGGAC 1 cut(s) 215
FatI CATG 1 cut(s) 402
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 1 cut(s) 301
Fsp4HI GCNGC 1 cut(s) 301
GlaI GCGC 1 cut(s) 198
GluI GCNGC 1 cut(s) 301
GsuI CTGGAG 2 cut(s) 45, 234
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 2 cut(s) 257, 300
HapII CCGG 1 cut(s) 200
HhaI GCGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 1 cut(s) 406
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 189
HpaII CCGG 1 cut(s) 200
HphI GGTGA 2 cut(s) 236, 346
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 2 cut(s) 207, 397
Hpy188III TCNNGA 3 cut(s) 31, 263, 362
Hpy8I GTNNAC 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 437
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 209, 306
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 1 cut(s) 406
HspAI GCGC 1 cut(s) 197
KasI GGCGCC 1 cut(s) 196
KroI GCCGGC 1 cut(s) 199
KroNI GCCGGC 1 cut(s) 201
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 3 cut(s) 151, 259, 358
LmnI GCTCC 1 cut(s) 208
MalI GATC 3 cut(s) 153, 261, 360
MboI GATC 3 cut(s) 151, 259, 358
MboII GAAGA 3 cut(s) 17, 377, 410
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 2 cut(s) 34, 109
Mly113I GGCGCC 1 cut(s) 197
MnlI CCTC 3 cut(s) 65, 172, 330
MroNI GCCGGC 1 cut(s) 199
MseI TTAA 2 cut(s) 68, 162
MspI CCGG 1 cut(s) 200
Mva1269I GAATGC 1 cut(s) 437
MwoI GCNNNNNNNGC 3 cut(s) 188, 209, 306
NaeI GCCGGC 1 cut(s) 201
NarI GGCGCC 1 cut(s) 197
NdeII GATC 3 cut(s) 151, 259, 358
NgoMIV GCCGGC 1 cut(s) 199
NlaIII CATG 1 cut(s) 406
NlaIV GGNNCC 2 cut(s) 198, 204
NspI RCATGY 1 cut(s) 406
PciI ACATGT 1 cut(s) 402
PctI GAATGC 1 cut(s) 437
PdiI GCCGGC 1 cut(s) 201
PkrI GCNGC 1 cut(s) 302
Ple19I CGATCG 1 cut(s) 154
PluTI GGCGCC 1 cut(s) 200
PpuMI RGGWCCY 1 cut(s) 265
PscI ACATGT 1 cut(s) 402
Psp5II RGGWCCY 1 cut(s) 265
PspN4I GGNNCC 2 cut(s) 198, 204
PspPI GGNCC 1 cut(s) 265
PspPPI RGGWCCY 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 268
PvuI CGATCG 1 cut(s) 154
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SaqAI TTAA 2 cut(s) 68, 162
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 3 cut(s) 151, 259, 358
Sau96I GGNCC 1 cut(s) 265
SduI GDGCHC 1 cut(s) 240
SetI ASST 4 cut(s) 67, 193, 270, 281
SfoI GGCGCC 1 cut(s) 198
SinI GGWCC 1 cut(s) 265
SmlI CTYRAG 1 cut(s) 424
SmoI CTYRAG 1 cut(s) 424
Sse9I AATT 2 cut(s) 34, 109
SsiI CCGC 1 cut(s) 301
SspDI GGCGCC 1 cut(s) 196
TaqI TCGA 2 cut(s) 131, 150
TasI AATT 2 cut(s) 34, 109
TauI GCSGC 1 cut(s) 303
Tru1I TTAA 2 cut(s) 68, 162
Tru9I TTAA 2 cut(s) 68, 162
TscAI CASTG 2 cut(s) 48, 258
TspDTI ATGAA 2 cut(s) 45, 201
TspRI CASTG 2 cut(s) 48, 258
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 1 cut(s) 109
XceI RCATGY 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.