FvH4_4g32590

fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000614
Physical Location & Seq
Forward (+)
31208730 .. 31209686
957 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32590.t1

Sequence Viewer

Length: 615 bp
ATGGCGTCGTCTTCAAGCTTGCTCCTCTTCCTCCTTTTCTCTCTCCTCTCCGTCTCCTCCGCCCAAACCCTAGCCGATTCCGGCTTCAAATCCATGTCGCTCGACTCCCGGTCGTCCCTCACCGTATTCGCTGCGGCCGACGCTGCTTTCGCCGCCTCTGGCCAGCCCACTCGGGACCTCATCCGCTTCCACCTCGTCCCCGCCGCCATCCCTCTCCGATCACTCAAGTCCCTCCCTTTCGGCGCCAAGATCCCGACTCTTCTCGACGGCTACTCTCTCACCGTCACTACTCTCCCGGCCGACGACCTCGTCTCGCTCAACAACGTCACCGTCGCTCCGGTCTTCGAAGACGGCAAGCTGGTCATCTTCGGAATCGACAGGTTCTTCGACCTGAATTTCCGGATCTCAGGCCCGATTGAGAGTCACAGCCCCGAGATTCTCGGCTGCTCGAACCCGCGAAACCCTAACGAAGCGATGGTGGCCAAAACGGCGGCGTTCTGTGGAGCAAGGTCCAAGATTATGGAGCCCAACAAAGTCACCCAACTGAGCCCAACAGGGCCCAATGCGACTGCCACTGCTCCTCTTCATCTTTGTCATTCAAGTGTTTGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

205

Amino Acids

21.56

Weight (kDa)

6.89

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
AccB1I GGYRCC 1 cut(s) 242
AccII CGCG 1 cut(s) 457
AccIII TCCGGA 1 cut(s) 399
AciI CCGC 8 cut(s) 60, 134, 153, 184, 201, 204, 455, 491
AclWI GGATC 2 cut(s) 244, 410
AcoI YGGCCR 4 cut(s) 135, 160, 297, 480
AcsI RAATTY 1 cut(s) 394
AcyI GRCGYC 2 cut(s) 5, 243
AgsI TTSAA 3 cut(s) 15, 88, 600
AhdI GACNNNNNGTC 1 cut(s) 109
AluBI AGCT 2 cut(s) 18, 358
AluI AGCT 2 cut(s) 18, 358
Alw26I GTCTC 2 cut(s) 58, 316
AlwI GGATC 2 cut(s) 244, 410
Ama87I CYCGRG 2 cut(s) 171, 431
Aor13HI TCCGGA 1 cut(s) 399
AoxI GGCC 6 cut(s) 135, 160, 297, 409, 480, 557
ApaI GGGCCC 1 cut(s) 561
ApeKI GCWGC 3 cut(s) 131, 143, 444
ApoI RAATTY 1 cut(s) 394
ArsI GACNNNNNNTTYG 4 cut(s) 131, 163, 368, 400
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 5 cut(s) 175, 410, 510, 557, 558
AsuC2I CCSGG 2 cut(s) 109, 296
AsuHPI GGTGA 4 cut(s) 112, 271, 319, 529
AsuII TTCGAA 1 cut(s) 345
AvaI CYCGRG 2 cut(s) 171, 431
AvaII GGWCC 2 cut(s) 175, 510
BaeGI GKGCMC 1 cut(s) 561
BalI TGGCCA 2 cut(s) 162, 482
BanI GGYRCC 1 cut(s) 242
BanII GRGCYC 3 cut(s) 528, 551, 561
BbsI GAAGAC 3 cut(s) 3, 334, 354
BbvI GCAGC 3 cut(s) 118, 130, 431
BccI CCATC 2 cut(s) 215, 469
BceAI ACGGC 3 cut(s) 283, 367, 504
BcnI CCSGG 2 cut(s) 109, 296
BcoDI GTCTC 2 cut(s) 58, 316
BfaI CTAG 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 246
BglI GCCNNNNNGGC 1 cut(s) 488
BisI GCNGC 7 cut(s) 132, 135, 144, 153, 204, 445, 492
BlsI GCNGC 7 cut(s) 133, 136, 145, 154, 205, 446, 493
Bme1390I CCNGG 2 cut(s) 109, 296
Bme18I GGWCC 2 cut(s) 175, 510
BmeRI GACNNNNNGTC 1 cut(s) 109
BmeT110I CYCGRG 2 cut(s) 171, 431
BmgT120I GGNCC 5 cut(s) 175, 410, 510, 557, 558
BmiI GGNNCC 4 cut(s) 176, 244, 525, 559
BmrFI CCNGG 2 cut(s) 109, 296
BpiI GAAGAC 3 cut(s) 3, 334, 354
Bpu14I TTCGAA 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 2 cut(s) 109, 296
BsaHI GRCGYC 2 cut(s) 5, 243
BsaWI WCCGGW 2 cut(s) 337, 399
BsaXI ACNNNNNCTCC 2 cut(s) 319, 349
BseAI TCCGGA 1 cut(s) 399
BseGI GGATG 2 cut(s) 180, 207
BseMII CTCAG 2 cut(s) 420, 536
BseRI GAGGAG 4 cut(s) 14, 35, 46, 570
BseSI GKGCMC 1 cut(s) 561
BseX3I CGGCCG 2 cut(s) 135, 297
BseXI GCAGC 3 cut(s) 118, 130, 431
Bsh1236I CGCG 1 cut(s) 457
Bsh1285I CGRYCG 3 cut(s) 113, 138, 300
BshFI GGCC 6 cut(s) 137, 162, 299, 411, 482, 559
BshNI GGYRCC 1 cut(s) 242
BsiEI CGRYCG 3 cut(s) 113, 138, 300
BsiHKCI CYCGRG 2 cut(s) 171, 431
BsiSI CCGG 5 cut(s) 81, 109, 296, 338, 400
BslFI GGGAC 4 cut(s) 100, 182, 188, 214
BsmAI GTCTC 2 cut(s) 58, 316
BsmBI CGTCTC 2 cut(s) 58, 316
BsmFI GGGAC 4 cut(s) 100, 182, 188, 214
BsnI GGCC 6 cut(s) 137, 162, 299, 411, 482, 559
BsoBI CYCGRG 2 cut(s) 171, 431
Bsp119I TTCGAA 1 cut(s) 345
Bsp120I GGGCCC 1 cut(s) 557
Bsp1286I GDGCHC 3 cut(s) 528, 551, 561
Bsp13I TCCGGA 1 cut(s) 399
Bsp143I GATC 3 cut(s) 218, 249, 402
BspACI CCGC 8 cut(s) 60, 134, 153, 184, 201, 204, 455, 491
BspANI GGCC 6 cut(s) 137, 162, 299, 411, 482, 559
BspCNI CTCAG 2 cut(s) 419, 537
BspEI TCCGGA 1 cut(s) 399
BspFNI CGCG 1 cut(s) 457
BspLI GGNNCC 4 cut(s) 176, 244, 525, 559
BspPI GGATC 2 cut(s) 244, 410
BspT104I TTCGAA 1 cut(s) 345
BspT107I GGYRCC 1 cut(s) 242
BssMI GATC 3 cut(s) 218, 249, 402
BssNI GRCGYC 2 cut(s) 5, 243
Bst4CI ACNGT 3 cut(s) 124, 283, 331
Bst6I CTCTTC 3 cut(s) 32, 264, 588
BstACI GRCGYC 2 cut(s) 5, 243
BstBI TTCGAA 1 cut(s) 345
BstC8I GCNNGC 3 cut(s) 20, 164, 356
BstDEI CTNAG 2 cut(s) 406, 545
BstF5I GGATG 2 cut(s) 180, 207
BstFNI CGCG 1 cut(s) 457
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 3 cut(s) 221, 252, 405
BstMAI GTCTC 2 cut(s) 58, 316
BstMBI GATC 3 cut(s) 218, 249, 402
BstMCI CGRYCG 3 cut(s) 113, 138, 300
BstMWI GCNNNNNNNGC 6 cut(s) 140, 143, 149, 152, 479, 488
BstSCI CCNGG 2 cut(s) 107, 294
BstSLI GKGCMC 1 cut(s) 561
BstUI CGCG 1 cut(s) 457
BstV1I GCAGC 3 cut(s) 118, 130, 431
BstV2I GAAGAC 3 cut(s) 3, 334, 354
BstX2I RGATCY 2 cut(s) 249, 402
BstXI CCANNNNNNTGG 1 cut(s) 520
BstYI RGATCY 2 cut(s) 249, 402
BstZI CGGCCG 2 cut(s) 135, 297
BsuRI GGCC 6 cut(s) 137, 162, 299, 411, 482, 559
BtgZI GCGATG 1 cut(s) 488
BtsCI GGATG 2 cut(s) 180, 207
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 3 cut(s) 20, 164, 356
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 5 cut(s) 175, 410, 510, 557, 558
CseI GACGC 1 cut(s) 149
CviAII CATG 1 cut(s) 94
DdeI CTNAG 2 cut(s) 406, 545
DinI GGCGCC 1 cut(s) 244
DpnI GATC 3 cut(s) 220, 251, 404
DpnII GATC 3 cut(s) 218, 249, 402
DrdI GACNNNNNNGTC 1 cut(s) 308
DriI GACNNNNNGTC 1 cut(s) 109
DseDI GACNNNNNNGTC 1 cut(s) 308
EaeI YGGCCR 4 cut(s) 135, 160, 297, 480
EagI CGGCCG 2 cut(s) 135, 297
Eam1104I CTCTTC 3 cut(s) 32, 264, 588
Eam1105I GACNNNNNGTC 1 cut(s) 109
EarI CTCTTC 3 cut(s) 32, 264, 588
EciI GGCGGA 1 cut(s) 49
EclXI CGGCCG 2 cut(s) 135, 297
Eco24I GRGCYC 3 cut(s) 528, 551, 561
Eco47I GGWCC 2 cut(s) 175, 510
Eco52I CGGCCG 2 cut(s) 135, 297
Eco88I CYCGRG 2 cut(s) 171, 431
EcoO109I RGGNCCY 2 cut(s) 175, 557
EcoT38I GRGCYC 3 cut(s) 528, 551, 561
EgeI GGCGCC 1 cut(s) 244
EheI GGCGCC 1 cut(s) 244
Esp3I CGTCTC 2 cut(s) 58, 316
FaeI CATG 1 cut(s) 97
FaiI YATR 2 cut(s) 95, 521
FaqI GGGAC 4 cut(s) 100, 182, 188, 214
FatI CATG 1 cut(s) 93
FauI CCCGC 2 cut(s) 208, 462
Fnu4HI GCNGC 7 cut(s) 132, 135, 144, 153, 204, 445, 492
FokI GGATG 2 cut(s) 167, 194
FriOI GRGCYC 3 cut(s) 528, 551, 561
Fsp4HI GCNGC 7 cut(s) 132, 135, 144, 153, 204, 445, 492
FspBI CTAG 1 cut(s) 71
GlaI GCGC 1 cut(s) 244
GluI GCNGC 7 cut(s) 132, 135, 144, 153, 204, 445, 492
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 6 cut(s) 137, 162, 299, 411, 482, 559
HapII CCGG 5 cut(s) 81, 109, 296, 338, 400
HgaI GACGC 1 cut(s) 149
HhaI GCGC 1 cut(s) 245
Hin1I GRCGYC 2 cut(s) 5, 243
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HindIII AAGCTT 1 cut(s) 16
HinfI GANTC 6 cut(s) 77, 104, 256, 372, 421, 436
HpaII CCGG 5 cut(s) 81, 109, 296, 338, 400
HphI GGTGA 4 cut(s) 112, 271, 319, 529
Hpy188I TCNGA 3 cut(s) 218, 371, 614
Hpy188III TCNNGA 4 cut(s) 173, 253, 263, 400
Hpy99I CGWCG 5 cut(s) 10, 143, 269, 305, 335
HpyCH4III ACNGT 3 cut(s) 124, 283, 331
HpyCH4IV ACGT 1 cut(s) 324
HpyF10VI GCNNNNNNNGC 6 cut(s) 140, 143, 149, 152, 479, 488
HpyF3I CTNAG 2 cut(s) 406, 545
HpySE526I ACGT 1 cut(s) 324
Hsp92I GRCGYC 2 cut(s) 5, 243
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 1 cut(s) 243
KasI GGCGCC 1 cut(s) 242
Kpn2I TCCGGA 1 cut(s) 399
Kzo9I GATC 3 cut(s) 218, 249, 402
LmnI GCTCC 5 cut(s) 27, 340, 503, 523, 583
Lsp1109I GCAGC 3 cut(s) 118, 130, 431
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 4 cut(s) 283, 325, 422, 535
MalI GATC 3 cut(s) 220, 251, 404
MboI GATC 3 cut(s) 218, 249, 402
MboII GAAGA 8 cut(s) 3, 19, 251, 334, 358, 359, 376, 575
MflI RGATCY 2 cut(s) 249, 402
MhlI GDGCHC 3 cut(s) 528, 551, 561
MlsI TGGCCA 2 cut(s) 162, 482
MluCI AATT 1 cut(s) 394
MluNI TGGCCA 2 cut(s) 162, 482
Mly113I GGCGCC 1 cut(s) 243
MlyI GAGTC 3 cut(s) 98, 250, 430
Mox20I TGGCCA 2 cut(s) 162, 482
MroI TCCGGA 1 cut(s) 399
MscI TGGCCA 2 cut(s) 162, 482
MslI CAYNNNNRTG 1 cut(s) 600
Msp20I TGGCCA 2 cut(s) 162, 482
MspI CCGG 5 cut(s) 81, 109, 296, 338, 400
MspR9I CCNGG 2 cut(s) 109, 296
MvnI CGCG 1 cut(s) 457
MwoI GCNNNNNNNGC 6 cut(s) 140, 143, 149, 152, 479, 488
NarI GGCGCC 1 cut(s) 243
NciI CCSGG 2 cut(s) 109, 296
NdeII GATC 3 cut(s) 218, 249, 402
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 4 cut(s) 176, 244, 525, 559
NmeAIII GCCGAG 1 cut(s) 420
NmuCI GTSAC 4 cut(s) 283, 325, 422, 535
NspV TTCGAA 1 cut(s) 345
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PfeI GAWTC 3 cut(s) 77, 372, 436
PflFI GACNNNGTC 1 cut(s) 308
PkrI GCNGC 7 cut(s) 133, 136, 145, 154, 205, 446, 493
PleI GAGTC 3 cut(s) 98, 250, 429
PluTI GGCGCC 1 cut(s) 246
PpsI GAGTC 3 cut(s) 98, 250, 429
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
PspN4I GGNNCC 4 cut(s) 176, 244, 525, 559
PspOMI GGGCCC 1 cut(s) 557
PspPI GGNCC 5 cut(s) 175, 410, 510, 557, 558
PspPPI RGGWCCY 1 cut(s) 175
PsuI RGATCY 2 cut(s) 249, 402
PsyI GACNNNGTC 1 cut(s) 308
RseI CAYNNNNRTG 1 cut(s) 600
SatI GCNGC 7 cut(s) 132, 135, 144, 153, 204, 445, 492
Sau3AI GATC 3 cut(s) 218, 249, 402
Sau96I GGNCC 5 cut(s) 175, 410, 510, 557, 558
SchI GAGTC 3 cut(s) 98, 250, 430
ScrFI CCNGG 2 cut(s) 109, 296
SduI GDGCHC 3 cut(s) 528, 551, 561
SetI ASST 9 cut(s) 20, 180, 195, 309, 327, 360, 383, 393, 512
SfoI GGCGCC 1 cut(s) 244
SfuI TTCGAA 1 cut(s) 345
SinI GGWCC 2 cut(s) 175, 510
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 394
SsiI CCGC 8 cut(s) 60, 134, 153, 184, 201, 204, 455, 491
SspDI GGCGCC 1 cut(s) 242
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 2 cut(s) 107, 294
TaaI ACNGT 3 cut(s) 124, 283, 331
TaiI ACGT 1 cut(s) 327
TaqI TCGA 6 cut(s) 102, 264, 345, 375, 387, 449
TasI AATT 1 cut(s) 394
TauI GCSGC 4 cut(s) 137, 155, 206, 494
TfiI GAWTC 3 cut(s) 77, 372, 436
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 4 cut(s) 283, 325, 422, 535
TseI GCWGC 3 cut(s) 131, 143, 444
Tsp45I GTSAC 4 cut(s) 283, 325, 422, 535
TspDTI ATGAA 1 cut(s) 575
TspGWI ACGGA 1 cut(s) 40
TspRI CASTG 1 cut(s) 580
Tth111I GACNNNGTC 1 cut(s) 308
VpaK11BI GGWCC 2 cut(s) 175, 510
XapI RAATTY 1 cut(s) 394
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.