Rh7AG473300

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000614
Physical Location & Seq
Reverse (-)
65672000 .. 65672431
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG473300.1

Sequence Viewer

Length: 432 bp
ATGGCTCTCACTCTCGAGGCCGTCTCTCAGTCTCTCATCCCCAAGTCACTGTTGCTCACCATCTTCGCTCCTCCGGACTTCGCCTGCAAGAGAGCCAGCCAACCCTCCCTCTCTCTCCTCCAATTCCACTTCGCCCCTCTTACTCTCCCCCTCCAAACCCTAAAATCGCTCCCCGCCGGCACCAAGATCCCAACTCTCCTCTCTAGTAGCTCCCTCTTTGTCACCTCGCCTCTTTCCGCCACCGGAATCTCTCTCAACGGCGTCAGGGTCACGACCGCCGCCTCGCGGATCTACTACGACGGGTTCTTGATCGTTCTCAGAGCTGAGGACTTCTTCGACCCAAACCCGAATTCCGGTCATGGATCCAATGTGAAAGTTACCTTTGTCGAACGGTATAAGCACGATTGGGTTTCTGGCGACTTCTTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

143

Amino Acids

15.5

Weight (kDa)

8.85

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AccII CGCG 1 cut(s) 286
AccIII TCCGGA 1 cut(s) 73
AciI CCGC 5 cut(s) 174, 237, 276, 279, 286
AclWI GGATC 4 cut(s) 181, 296, 357, 370
AcsI RAATTY 1 cut(s) 349
AcyI GRCGYC 1 cut(s) 261
AfiI CCNNNNNNNGG 2 cut(s) 285, 353
AjuI GAANNNNNNNTTGG 2 cut(s) 334, 366
AluBI AGCT 2 cut(s) 210, 323
AluI AGCT 2 cut(s) 210, 323
Alw26I GTCTC 2 cut(s) 28, 36
AlwI GGATC 4 cut(s) 181, 296, 357, 370
Ama87I CYCGRG 1 cut(s) 14
Aor13HI TCCGGA 1 cut(s) 73
AoxI GGCC 1 cut(s) 18
ApoI RAATTY 1 cut(s) 349
AsuHPI GGTGA 2 cut(s) 49, 214
AvaI CYCGRG 1 cut(s) 14
BamHI GGATCC 1 cut(s) 362
BanI GGYRCC 1 cut(s) 179
BbvCI CCTCAGC 1 cut(s) 324
BccI CCATC 1 cut(s) 68
BceAI ACGGC 2 cut(s) 5, 274
BcoDI GTCTC 2 cut(s) 28, 36
BfaI CTAG 1 cut(s) 204
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
BmeT110I CYCGRG 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 181, 364
BplI GAGNNNNNCTC 2 cut(s) 8, 40
Bpu10I CCTNAGC 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 261
BsaWI WCCGGW 3 cut(s) 73, 242, 353
Bsc4I CCNNNNNNNGG 2 cut(s) 285, 353
Bse118I RCCGGY 1 cut(s) 176
BseAI TCCGGA 1 cut(s) 73
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 2 cut(s) 285, 353
BseMII CTCAG 3 cut(s) 41, 315, 331
BseRI GAGGAG 3 cut(s) 60, 107, 188
Bsh1236I CGCG 1 cut(s) 286
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 1 cut(s) 20
BshNI GGYRCC 1 cut(s) 179
BsiEI CGRYCG 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 4 cut(s) 74, 177, 243, 354
BslI CCNNNNNNNGG 2 cut(s) 285, 353
BsmAI GTCTC 2 cut(s) 28, 36
BsmBI CGTCTC 1 cut(s) 28
BsnI GGCC 1 cut(s) 20
BsoBI CYCGRG 1 cut(s) 14
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 4 cut(s) 186, 288, 309, 362
BspACI CCGC 5 cut(s) 174, 237, 276, 279, 286
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 3 cut(s) 40, 316, 330
BspEI TCCGGA 1 cut(s) 73
BspFNI CGCG 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 181, 364
BspPI GGATC 4 cut(s) 181, 296, 357, 370
BspT107I GGYRCC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssMI GATC 4 cut(s) 186, 288, 309, 362
BssNI GRCGYC 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 51, 393
BstACI GRCGYC 1 cut(s) 261
BstC8I GCNNGC 3 cut(s) 85, 97, 178
BstDEI CTNAG 3 cut(s) 27, 317, 324
BstF5I GGATG 1 cut(s) 36
BstFNI CGCG 1 cut(s) 286
BstKTI GATC 4 cut(s) 189, 291, 312, 365
BstMAI GTCTC 2 cut(s) 28, 36
BstMBI GATC 4 cut(s) 186, 288, 309, 362
BstMCI CGRYCG 1 cut(s) 276
BstUI CGCG 1 cut(s) 286
BstX2I RGATCY 3 cut(s) 186, 288, 362
BstYI RGATCY 3 cut(s) 186, 288, 362
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 47
Cac8I GCNNGC 3 cut(s) 85, 97, 178
Cfr10I RCCGGY 1 cut(s) 176
CseI GACGC 1 cut(s) 250
CviAII CATG 1 cut(s) 359
CviJI RGCY 6 cut(s) 5, 20, 95, 99, 210, 323
CviKI_1 RGCY 6 cut(s) 5, 20, 95, 99, 210, 323
DdeI CTNAG 3 cut(s) 27, 317, 324
DpnI GATC 4 cut(s) 188, 290, 311, 364
DpnII GATC 4 cut(s) 186, 288, 309, 362
EciI GGCGGA 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 349
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 1 cut(s) 362
FaiI YATR 2 cut(s) 360, 396
FatI CATG 1 cut(s) 358
FauI CCCGC 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 1 cut(s) 204
GluI GCNGC 1 cut(s) 279
HaeIII GGCC 1 cut(s) 20
HapII CCGG 4 cut(s) 74, 177, 243, 354
HgaI GACGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 1 cut(s) 362
HinfI GANTC 1 cut(s) 246
HpaII CCGG 4 cut(s) 74, 177, 243, 354
HphI GGTGA 2 cut(s) 49, 214
Hpy188I TCNGA 1 cut(s) 320
Hpy188III TCNNGA 4 cut(s) 14, 74, 271, 307
Hpy99I CGWCG 1 cut(s) 302
HpyCH4III ACNGT 2 cut(s) 51, 393
HpyCH4V TGCA 1 cut(s) 87
HpyF3I CTNAG 3 cut(s) 27, 317, 324
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 1 cut(s) 362
Kpn2I TCCGGA 1 cut(s) 73
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
Kzo9I GATC 4 cut(s) 186, 288, 309, 362
LmnI GCTCC 3 cut(s) 73, 174, 215
LpnPI CCDG 8 cut(s) 87, 97, 109, 190, 250, 256, 367, 399
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 4 cut(s) 45, 220, 268, 376
MalI GATC 4 cut(s) 188, 290, 311, 364
MboI GATC 4 cut(s) 186, 288, 309, 362
MboII GAAGA 2 cut(s) 55, 325
MflI RGATCY 3 cut(s) 186, 288, 362
MluCI AATT 2 cut(s) 122, 349
MroI TCCGGA 1 cut(s) 73
MroNI GCCGGC 1 cut(s) 176
MspI CCGG 4 cut(s) 74, 177, 243, 354
MvnI CGCG 1 cut(s) 286
NaeI GCCGGC 1 cut(s) 178
NdeII GATC 4 cut(s) 186, 288, 309, 362
NgoMIV GCCGGC 1 cut(s) 176
NlaIII CATG 1 cut(s) 362
NlaIV GGNNCC 2 cut(s) 181, 364
NmuCI GTSAC 3 cut(s) 45, 220, 268
PaeR7I CTCGAG 1 cut(s) 14
PdiI GCCGGC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 246
PkrI GCNGC 1 cut(s) 280
PspN4I GGNNCC 2 cut(s) 181, 364
PsuI RGATCY 3 cut(s) 186, 288, 362
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 4 cut(s) 186, 288, 309, 362
SetI ASST 4 cut(s) 212, 227, 325, 383
Sfr274I CTCGAG 1 cut(s) 14
SlaI CTCGAG 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 2 cut(s) 122, 349
SsiI CCGC 5 cut(s) 174, 237, 276, 279, 286
SspMI CTAG 1 cut(s) 204
TaaI ACNGT 2 cut(s) 51, 393
TaqI TCGA 3 cut(s) 15, 336, 387
TasI AATT 2 cut(s) 122, 349
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 1 cut(s) 246
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 3 cut(s) 45, 220, 268
Tsp45I GTSAC 3 cut(s) 45, 220, 268
TspRI CASTG 1 cut(s) 54
XapI RAATTY 1 cut(s) 349
XhoI CTCGAG 1 cut(s) 14
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.