Rw4G032880

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
59958673 .. 59959863
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G032880.1

Sequence Viewer

Length: 1191 bp
ATGGCTTCTTCTTCAACCTCACTCTTCTTCTTCTCTCTCCTCTCCTTCTCCTCCGCCCAAACCATCACCAACGCCGCCGAGATCCTCTCCGATTCCGGCTACAAATCCATGTCCTTCGCCCTCGACCTCGCCTCTCACTCCATCACCTCCCAGTCGCCGTCTCTCACCGTCTTCGCTCCGGCCGACGCCGCCTTCTCCAACTCCGGCCACCCCACTCTCAACCTCCTCCGCTACCACCTCCTCCCCATCGCTTTCCCTCTCCGATCACTCAAGTCCCTCCCGCTCGGTGCCAAGATCGCCACTCTGCTCGACGGCCACTCTCTCACCGTCACCACTCTGCCGTCCGACCGCCTCGTCTCGCTCAACAACGTCACCGTCACGGCGTCCCCAATTTTCGACGACGGGTCGTTGATCATCTTCGGAACCAACAAATTCTTCGACCCGTATTTCCGGATCTCGGGTCCGATTCGGAGCTATAGCCCCAAGAATCTCCTCTGCTTGGCGCAGCGAAACCCTAACGAAGCTATGGCTGTGGAAACGGCGGCGCATTACCCGTTCAGTGAAGCAAGCAAGGTGCTGAAATTGAAAGGCTGCTCTGTTATGGCTTCGTTTCTTGAAATGCAATTCCATGGGTTTCTCAAGTACCAGACCATGTTGACCGTCTTCGCTCCCGTTGACCAAGCCATGGTGCCCCGAATCGGAGATCTGAGCGGGTACTCGTCGATCTTCCGCCGCCACGTGGTCCCCTGCAAGCTTTCTTGGAACGATTTGGTGAGTCTATACGACGGCACTGTGTTGAGGACTAATCTGCAAGGGTTTATGATCAACATCACTCGATACGACGGCGTTTTGGTGCTCAATGGAGTCCCGGTGATAATGCCGGAGATGTATCACAACGGCTGGCTTGTGGTTCACGGAATCAGTGAGGTTCTTGAGTTTCCAGAGAGTCCACCGCAGCAAGTGGTGGCTCCTTCACCTGTCAATGAGGCAGATGGTCCCAGCTCCGGTGAGGATGAGAGTGCCGGAACAGAGCCTCCGGAGCCAGTAATAGAGGTGCCTTCTTCACCGGAATTCGATAGCAGCGATTCGGAGGAATTAGATACCGGCGATTCTGAGCTATTTGCTAACATGTCTTCCGAGGATGAAGGAGCCATTTCACACAGGCGCTTCTTTGTTTACAGGCCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

396

Amino Acids

43.11

Weight (kDa)

4.92

Isoelectric Point (pI)

58.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 199 - 311 1.6e-08 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000614)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 353
AccB1I GGYRCC 3 cut(s) 287, 688, 1054
AccB7I CCANNNNNTGG 1 cut(s) 685
AccBSI CCGCTC 2 cut(s) 283, 711
AccIII TCCGGA 2 cut(s) 450, 1036
AclWI GGATC 2 cut(s) 76, 461
AcoI YGGCCR 3 cut(s) 180, 205, 313
AcsI RAATTY 2 cut(s) 431, 1070
AcvI CACGTG 1 cut(s) 739
AcyI GRCGYC 2 cut(s) 186, 383
AfaI GTAC 2 cut(s) 644, 716
AfiI CCNNNNNNNGG 6 cut(s) 457, 499, 685, 698, 739, 1004
AflIII ACRYGT 1 cut(s) 1128
AgsI TTSAA 3 cut(s) 15, 586, 617
AhdI GACNNNNNGTC 1 cut(s) 403
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AloI GAACNNNNNNTCC 2 cut(s) 1018, 1050
AluBI AGCT 5 cut(s) 474, 524, 754, 1002, 1117
AluI AGCT 5 cut(s) 474, 524, 754, 1002, 1117
Alw21I GWGCWC 1 cut(s) 858
Alw26I GTCTC 2 cut(s) 165, 361
AlwI GGATC 2 cut(s) 76, 461
Ama87I CYCGRG 1 cut(s) 457
Aor13HI TCCGGA 2 cut(s) 450, 1036
AoxI GGCC 4 cut(s) 180, 205, 313, 1181
ApeKI GCWGC 4 cut(s) 505, 591, 955, 1080
ApoI RAATTY 2 cut(s) 431, 1070
AspLEI GCGC 3 cut(s) 505, 547, 1167
AspS9I GGNCC 3 cut(s) 461, 742, 995
AsuC2I CCSGG 1 cut(s) 869
AvaI CYCGRG 1 cut(s) 457
AvaII GGWCC 3 cut(s) 461, 742, 995
BaeGI GKGCMC 1 cut(s) 693
BanI GGYRCC 3 cut(s) 287, 688, 1054
BbrPI CACGTG 1 cut(s) 739
BbsI GAAGAC 3 cut(s) 163, 655, 1125
Bbv12I GWGCWC 1 cut(s) 858
BbvI GCAGC 4 cut(s) 517, 578, 967, 1092
BccI CCATC 4 cut(s) 71, 149, 254, 986
BceAI ACGGC 8 cut(s) 142, 325, 328, 396, 555, 802, 859, 913
BclI TGATCA 2 cut(s) 411, 822
BcnI CCSGG 1 cut(s) 869
BcoDI GTCTC 2 cut(s) 165, 361
BfmI CTRYAG 1 cut(s) 475
BfoI RGCGCY 1 cut(s) 1168
BglII AGATCT 1 cut(s) 703
BisI GCNGC 8 cut(s) 75, 189, 506, 543, 592, 733, 956, 1081
BlsI GCNGC 8 cut(s) 76, 190, 507, 544, 593, 734, 957, 1082
Bme1390I CCNGG 1 cut(s) 869
Bme18I GGWCC 3 cut(s) 461, 742, 995
BmeRI GACNNNNNGTC 1 cut(s) 403
BmeT110I CYCGRG 1 cut(s) 457
BmgT120I GGNCC 3 cut(s) 461, 742, 995
BmrFI CCNGG 1 cut(s) 869
BmrI ACTGGG 1 cut(s) 145
BmuI ACTGGG 1 cut(s) 145
BpiI GAAGAC 3 cut(s) 163, 655, 1125
BplI GAGNNNNNCTC 2 cut(s) 71, 103
BpuEI CTTGAG 3 cut(s) 254, 623, 953
BpuMI CCSGG 1 cut(s) 869
BsaAI YACGTR 1 cut(s) 739
BsaBI GATNNNNATC 1 cut(s) 827
BsaHI GRCGYC 2 cut(s) 186, 383
BsaJI CCNNGG 3 cut(s) 628, 684, 1137
BsaWI WCCGGW 4 cut(s) 450, 1004, 1036, 1066
BsaXI ACNNNNNCTCC 4 cut(s) 855, 885, 1018, 1048
Bsc4I CCNNNNNNNGG 6 cut(s) 457, 499, 685, 698, 739, 1004
Bse118I RCCGGY 1 cut(s) 1103
Bse1I ACTGG 2 cut(s) 151, 1043
Bse8I GATNNNNATC 1 cut(s) 827
BseAI TCCGGA 2 cut(s) 450, 1036
BseDI CCNNGG 3 cut(s) 628, 684, 1137
BseGI GGATG 2 cut(s) 1018, 1147
BseJI GATNNNNATC 1 cut(s) 827
BseLI CCNNNNNNNGG 6 cut(s) 457, 499, 685, 698, 739, 1004
BseMII CTCAG 2 cut(s) 698, 1104
BseNI ACTGG 2 cut(s) 151, 1043
BseRI GAGGAG 5 cut(s) 29, 40, 215, 230, 482
BseSI GKGCMC 1 cut(s) 693
BseX3I CGGCCG 1 cut(s) 180
BseXI GCAGC 4 cut(s) 517, 578, 967, 1092
BseYI CCCAGC 1 cut(s) 998
Bsh1285I CGRYCG 2 cut(s) 183, 349
BshFI GGCC 4 cut(s) 182, 207, 315, 1183
BshNI GGYRCC 3 cut(s) 287, 688, 1054
BsiEI CGRYCG 2 cut(s) 183, 349
BsiHKAI GWGCWC 1 cut(s) 858
BsiHKCI CYCGRG 1 cut(s) 457
BslFI GGGAC 5 cut(s) 259, 370, 728, 851, 981
BslI CCNNNNNNNGG 6 cut(s) 457, 499, 685, 698, 739, 1004
BsmAI GTCTC 2 cut(s) 165, 361
BsmBI CGTCTC 2 cut(s) 165, 361
BsmFI GGGAC 5 cut(s) 259, 370, 728, 851, 981
BsnI GGCC 4 cut(s) 182, 207, 315, 1183
BsoBI CYCGRG 1 cut(s) 457
Bsp1286I GDGCHC 2 cut(s) 693, 858
Bsp13I TCCGGA 2 cut(s) 450, 1036
Bsp143I GATC 8 cut(s) 81, 263, 294, 411, 453, 703, 723, 822
Bsp19I CCATGG 2 cut(s) 628, 684
BspANI GGCC 4 cut(s) 182, 207, 315, 1183
BspCNI CTCAG 2 cut(s) 699, 1105
BspEI TCCGGA 2 cut(s) 450, 1036
BspPI GGATC 2 cut(s) 76, 461
BspT107I GGYRCC 3 cut(s) 287, 688, 1054
BsrBI CCGCTC 2 cut(s) 283, 711
BsrFI RCCGGY 1 cut(s) 1103
BsrI ACTGG 2 cut(s) 151, 1043
BssAI RCCGGY 1 cut(s) 1103
BssECI CCNNGG 3 cut(s) 628, 684, 1137
BssMI GATC 8 cut(s) 81, 263, 294, 411, 453, 703, 723, 822
BssNI GRCGYC 2 cut(s) 186, 383
BssT1I CCWWGG 2 cut(s) 628, 684
Bst4CI ACNGT 5 cut(s) 169, 328, 376, 661, 793
Bst6I CTCTTC 1 cut(s) 29
BstACI GRCGYC 2 cut(s) 186, 383
BstBAI YACGTR 1 cut(s) 739
BstC8I GCNNGC 3 cut(s) 568, 752, 902
BstDEI CTNAG 2 cut(s) 707, 1113
BstDSI CCRYGG 2 cut(s) 628, 684
BstF5I GGATG 2 cut(s) 1018, 1147
BstH2I RGCGCY 1 cut(s) 1168
BstHHI GCGC 3 cut(s) 505, 547, 1167
BstKTI GATC 8 cut(s) 84, 266, 297, 414, 456, 706, 726, 825
BstMAI GTCTC 2 cut(s) 165, 361
BstMBI GATC 8 cut(s) 81, 263, 294, 411, 453, 703, 723, 822
BstMCI CGRYCG 2 cut(s) 183, 349
BstMWI GCNNNNNNNGC 3 cut(s) 188, 296, 1039
BstNSI RCATGY 1 cut(s) 1132
BstSCI CCNGG 1 cut(s) 867
BstSFI CTRYAG 1 cut(s) 475
BstSLI GKGCMC 1 cut(s) 693
BstV1I GCAGC 4 cut(s) 517, 578, 967, 1092
BstV2I GAAGAC 3 cut(s) 163, 655, 1125
BstX2I RGATCY 3 cut(s) 81, 453, 703
BstYI RGATCY 3 cut(s) 81, 453, 703
BstZI CGGCCG 1 cut(s) 180
BsuRI GGCC 4 cut(s) 182, 207, 315, 1183
BtgI CCRYGG 2 cut(s) 628, 684
BtgZI GCGATG 1 cut(s) 232
BtsCI GGATG 2 cut(s) 1018, 1147
BtsIMutI CAGTG 3 cut(s) 565, 789, 928
Cac8I GCNNGC 3 cut(s) 568, 752, 902
CfoI GCGC 3 cut(s) 505, 547, 1167
Cfr10I RCCGGY 1 cut(s) 1103
Cfr13I GGNCC 3 cut(s) 461, 742, 995
CseI GACGC 2 cut(s) 194, 372
Csp6I GTAC 2 cut(s) 643, 715
CviAII CATG 5 cut(s) 109, 629, 652, 685, 1129
CviQI GTAC 2 cut(s) 643, 715
DdeI CTNAG 2 cut(s) 707, 1113
DpnI GATC 8 cut(s) 83, 265, 296, 413, 455, 705, 725, 824
DpnII GATC 8 cut(s) 81, 263, 294, 411, 453, 703, 723, 822
DrdI GACNNNNNNGTC 1 cut(s) 353
DriI GACNNNNNGTC 1 cut(s) 403
DseDI GACNNNNNNGTC 1 cut(s) 353
EaeI YGGCCR 3 cut(s) 180, 205, 313
EagI CGGCCG 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 29
Eam1105I GACNNNNNGTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 29
EciI GGCGGA 2 cut(s) 43, 719
EclXI CGGCCG 1 cut(s) 180
Eco130I CCWWGG 2 cut(s) 628, 684
Eco147I AGGCCT 1 cut(s) 1183
Eco47I GGWCC 3 cut(s) 461, 742, 995
Eco52I CGGCCG 1 cut(s) 180
Eco72I CACGTG 1 cut(s) 739
Eco88I CYCGRG 1 cut(s) 457
EcoRI GAATTC 1 cut(s) 1070
EcoT14I CCWWGG 2 cut(s) 628, 684
ErhI CCWWGG 2 cut(s) 628, 684
Esp3I CGTCTC 2 cut(s) 165, 361
FaeI CATG 5 cut(s) 112, 632, 655, 688, 1132
FaqI GGGAC 5 cut(s) 259, 370, 728, 851, 981
FatI CATG 5 cut(s) 108, 628, 651, 684, 1128
FauI CCCGC 2 cut(s) 288, 704
FbaI TGATCA 2 cut(s) 411, 822
Fnu4HI GCNGC 8 cut(s) 75, 189, 506, 543, 592, 733, 956, 1081
FokI GGATG 2 cut(s) 1025, 1154
Fsp4HI GCNGC 8 cut(s) 75, 189, 506, 543, 592, 733, 956, 1081
GlaI GCGC 3 cut(s) 504, 546, 1166
GluI GCNGC 8 cut(s) 75, 189, 506, 543, 592, 733, 956, 1081
GsaI CCCAGC 1 cut(s) 1002
HaeII RGCGCY 1 cut(s) 1168
HaeIII GGCC 4 cut(s) 182, 207, 315, 1183
HgaI GACGC 2 cut(s) 194, 372
HhaI GCGC 3 cut(s) 505, 547, 1167
Hin1I GRCGYC 2 cut(s) 186, 383
Hin1II CATG 5 cut(s) 112, 632, 655, 688, 1132
Hin6I GCGC 3 cut(s) 503, 545, 1165
HinP1I GCGC 3 cut(s) 503, 545, 1165
HincII GTYRAC 2 cut(s) 657, 676
HindII GTYRAC 2 cut(s) 657, 676
HindIII AAGCTT 1 cut(s) 752
Hpy166II GTNNAC 5 cut(s) 657, 676, 913, 950, 1177
Hpy188III TCNNGA 5 cut(s) 451, 614, 932, 941, 1037
Hpy8I GTNNAC 5 cut(s) 657, 676, 913, 950, 1177
Hpy99I CGWCG 7 cut(s) 188, 314, 401, 404, 724, 788, 845
HpyAV CCTTC 6 cut(s) 55, 124, 202, 981, 1068, 1139
HpyCH4III ACNGT 5 cut(s) 169, 328, 376, 661, 793
HpyCH4IV ACGT 2 cut(s) 369, 738
HpyCH4V TGCA 3 cut(s) 622, 750, 811
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 296, 1039
HpyF3I CTNAG 2 cut(s) 707, 1113
HpySE526I ACGT 2 cut(s) 369, 738
Hsp92I GRCGYC 2 cut(s) 186, 383
Hsp92II CATG 5 cut(s) 112, 632, 655, 688, 1132
HspAI GCGC 3 cut(s) 503, 545, 1165
Kpn2I TCCGGA 2 cut(s) 450, 1036
Ksp22I TGATCA 2 cut(s) 411, 822
Kzo9I GATC 8 cut(s) 81, 263, 294, 411, 453, 703, 723, 822
LmnI GCTCC 7 cut(s) 181, 471, 673, 973, 1007, 1039, 1148
Lsp1109I GCAGC 4 cut(s) 517, 578, 967, 1092
MaeII ACGT 2 cut(s) 369, 738
MaeIII GTNAC 3 cut(s) 328, 370, 376
MalI GATC 8 cut(s) 83, 265, 296, 413, 455, 705, 725, 824
MbiI CCGCTC 2 cut(s) 283, 711
MboI GATC 8 cut(s) 81, 263, 294, 411, 453, 703, 723, 822
MflI RGATCY 3 cut(s) 81, 453, 703
MhlI GDGCHC 2 cut(s) 693, 858
MluCI AATT 6 cut(s) 390, 431, 581, 623, 1070, 1094
MlyI GAGTC 3 cut(s) 784, 873, 955
MmeI TCCRAC 2 cut(s) 222, 369
MroI TCCGGA 2 cut(s) 450, 1036
MspR9I CCNGG 1 cut(s) 869
MwoI GCNNNNNNNGC 3 cut(s) 188, 296, 1039
NciI CCSGG 1 cut(s) 869
NcoI CCATGG 2 cut(s) 628, 684
NdeII GATC 8 cut(s) 81, 263, 294, 411, 453, 703, 723, 822
NlaIII CATG 5 cut(s) 112, 632, 655, 688, 1132
NmeAIII GCCGAG 1 cut(s) 103
NmuCI GTSAC 3 cut(s) 328, 370, 376
NspI RCATGY 1 cut(s) 1132
PceI AGGCCT 1 cut(s) 1183
PciI ACATGT 1 cut(s) 1128
PcsI WCGNNNNNNNCGW 2 cut(s) 180, 1080
PfeI GAWTC 7 cut(s) 92, 466, 487, 696, 918, 1085, 1109
PflMI CCANNNNNTGG 1 cut(s) 685
PkrI GCNGC 8 cut(s) 76, 190, 507, 544, 593, 734, 957, 1082
PleI GAGTC 3 cut(s) 783, 872, 954
PmaCI CACGTG 1 cut(s) 739
PmlI CACGTG 1 cut(s) 739
PpsI GAGTC 3 cut(s) 783, 872, 954
Ppu21I YACGTR 1 cut(s) 739
PscI ACATGT 1 cut(s) 1128
PspCI CACGTG 1 cut(s) 739
PspFI CCCAGC 1 cut(s) 998
PspPI GGNCC 3 cut(s) 461, 742, 995
PsuI RGATCY 3 cut(s) 81, 453, 703
RsaI GTAC 2 cut(s) 644, 716
RsaNI GTAC 2 cut(s) 643, 715
SatI GCNGC 8 cut(s) 75, 189, 506, 543, 592, 733, 956, 1081
Sau3AI GATC 8 cut(s) 81, 263, 294, 411, 453, 703, 723, 822
Sau96I GGNCC 3 cut(s) 461, 742, 995
SchI GAGTC 3 cut(s) 784, 873, 955
ScrFI CCNGG 1 cut(s) 869
SduI GDGCHC 2 cut(s) 693, 858
SfcI CTRYAG 1 cut(s) 475
SinI GGWCC 3 cut(s) 461, 742, 995
SmlI CTYRAG 3 cut(s) 269, 638, 932
SmoI CTYRAG 3 cut(s) 269, 638, 932
Sse9I AATT 6 cut(s) 390, 431, 581, 623, 1070, 1094
SseBI AGGCCT 1 cut(s) 1183
StuI AGGCCT 1 cut(s) 1183
StyD4I CCNGG 1 cut(s) 867
StyI CCWWGG 2 cut(s) 628, 684
TaaI ACNGT 5 cut(s) 169, 328, 376, 661, 793
TaiI ACGT 2 cut(s) 372, 741
TaqI TCGA 7 cut(s) 123, 309, 396, 438, 722, 835, 1074
TasI AATT 6 cut(s) 390, 431, 581, 623, 1070, 1094
TauI GCSGC 4 cut(s) 77, 191, 545, 735
TfiI GAWTC 7 cut(s) 92, 466, 487, 696, 918, 1085, 1109
TscAI CASTG 3 cut(s) 565, 796, 928
TseFI GTSAC 3 cut(s) 328, 370, 376
TseI GCWGC 4 cut(s) 505, 591, 955, 1080
Tsp45I GTSAC 3 cut(s) 328, 370, 376
TspDTI ATGAA 2 cut(s) 1158, 1176
TspGWI ACGGA 1 cut(s) 930
TspRI CASTG 3 cut(s) 565, 796, 928
Van91I CCANNNNNTGG 1 cut(s) 685
VpaK11BI GGWCC 3 cut(s) 461, 742, 995
XapI RAATTY 2 cut(s) 431, 1070
XceI RCATGY 1 cut(s) 1132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.