Rh4CG408000

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000614
Physical Location & Seq
Forward (+)
65419035 .. 65420389
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG408000.1

Sequence Viewer

Length: 1056 bp
ATGGCGTCGCCGTCGATCACCGCCGTCTCTCTCCTCATCCTCCTCTTCTCCCTCCTCTCTCTCTCCTCCGCTCTCCCCTCCCGCAGCATCCTCAACGCCGCCGAAGTCCTCTCCGATTCCGGCTACCTCTCCATGGCTCTCACTCTCGAGGTCGTCTCTCAGTCCCTCGTCCCCAAGTCGCCGTCGCTCACCATCTTTGCGCCTCCGGACTCCGCCTTCAAGCGAGCCGGCCAGCCCTCCCTCTCTCTCCTCCAATTCCACTTCGCCCCTCTCGCTCTCCCCCTCCAAACCCTAAAATCGCTCCCCGCCGGCACCAAGATCCCGACTCTCCTCTCCGGCAGCTCCCTCGTCGTCACCTCGCCTCCTTCCGGCACCGGAATTTCTCTCAACGGCGTCAGGGTCACAACCGCCGCCTCACCGATCTACGACGACGGGTTCCTGATCATTCTCGGAGTCGAGGACTTCTTCGACCCGAATTTCCATGCTCCCGCCCCGACCCGAATCCCGGTCTCGGATCCGATGTGCGGGTCGCCTTCGTCGAACGGTACAAGCACGATCGGGTTTCCGGCGGCTTCTTGGTTTGAAGGAGCCAAAGGCGTGATGAGGTCCAATGGATACAGAGTGATGGCTTCGTTTCTTGATCTGCAGCTCATGGGGTTCAAGAACCCTCCGATTTCGTTGACCGTCTTTGCTCCGGTTGACCAGGCGGTGGAGAATCCTCTACTGGACCCGTCGATCTTTCTACGACACGTCGTTCCCTGCCGGCTTGTTTGGTCCGATTTGGTGAATTTCAGTGAAGGGACGGTGCTTCCAACCTATATGGCCGGGTTCACCATCAGAATCTCAAGAAACGGCGACGTTTTGCTGCTAAACGAAGTTCCGGTGTACTATGCAAACATGTATTACAGCGACTCCGTTGTGGTTCATGGTCTCCAGGAGAGTCTTGTCATGCCGGCGGAGGCGCAAGAAGAAGCTGCAGAGGAGTCTTCACAGGAAGAAGCCGGGAGTGAAACCAGTAGTGATTCACTTCTAATGGATGATGACAGTGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

351

Amino Acids

37.33

Weight (kDa)

4.41

Isoelectric Point (pI)

56.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 226 - 315 6.6e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 311, 371
AccB7I CCANNNNNTGG 1 cut(s) 709
AccBSI CCGCTC 1 cut(s) 71
AccIII TCCGGA 1 cut(s) 205
AclWI GGATC 3 cut(s) 313, 509, 522
AcoI YGGCCR 2 cut(s) 229, 822
AcsI RAATTY 4 cut(s) 378, 475, 787, 1049
AcyI GRCGYC 2 cut(s) 5, 393
AfaI GTAC 2 cut(s) 547, 887
AfiI CCNNNNNNNGG 6 cut(s) 133, 368, 505, 511, 524, 709
AflIII ACRYGT 2 cut(s) 748, 897
AgsI TTSAA 3 cut(s) 220, 584, 661
AjiI CACGTC 1 cut(s) 751
AjnI CCWGG 2 cut(s) 702, 933
AluBI AGCT 3 cut(s) 342, 649, 974
AluI AGCT 3 cut(s) 342, 649, 974
Alw26I GTCTC 4 cut(s) 31, 160, 514, 935
AlwI GGATC 3 cut(s) 313, 509, 522
Ama87I CYCGRG 1 cut(s) 146
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 2 cut(s) 229, 822
ApeKI GCWGC 5 cut(s) 84, 339, 646, 865, 974
ApoI RAATTY 4 cut(s) 378, 475, 787, 1049
AspLEI GCGC 2 cut(s) 202, 964
AspS9I GGNCC 3 cut(s) 606, 727, 774
AsuC2I CCSGG 3 cut(s) 506, 826, 1003
AsuHPI GGTGA 6 cut(s) 10, 181, 346, 408, 796, 823
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 3 cut(s) 606, 727, 774
BamHI GGATCC 1 cut(s) 514
BanI GGYRCC 2 cut(s) 311, 371
BbsI GAAGAC 1 cut(s) 978
BbvI GCAGC 5 cut(s) 96, 351, 658, 852, 961
BccI CCATC 3 cut(s) 200, 619, 842
BceAI ACGGC 4 cut(s) 8, 166, 406, 868
BcgI CGANNNNNNTGC 2 cut(s) 328, 362
BciT130I CCWGG 2 cut(s) 704, 935
BciVI GTATCC 1 cut(s) 608
BclI TGATCA 1 cut(s) 441
BcnI CCSGG 3 cut(s) 506, 826, 1003
BcoDI GTCTC 4 cut(s) 31, 160, 514, 935
BfmI CTRYAG 2 cut(s) 644, 975
BfuI GTATCC 1 cut(s) 608
BisI GCNGC 8 cut(s) 85, 99, 340, 411, 570, 647, 866, 975
BlsI GCNGC 8 cut(s) 86, 100, 341, 412, 571, 648, 867, 976
Bme1390I CCNGG 5 cut(s) 506, 704, 826, 935, 1003
Bme18I GGWCC 3 cut(s) 606, 727, 774
BmeT110I CYCGRG 1 cut(s) 146
BmgBI CACGTC 1 cut(s) 751
BmgT120I GGNCC 3 cut(s) 606, 727, 774
BmiI GGNNCC 6 cut(s) 313, 373, 437, 516, 589, 729
BmrFI CCNGG 5 cut(s) 506, 704, 826, 935, 1003
BmsI GCATC 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 978
BplI GAGNNNNNCTC 2 cut(s) 140, 172
BpmI CTGGAG 1 cut(s) 917
BpuEI CTTGAG 1 cut(s) 829
BpuMI CCSGG 3 cut(s) 506, 826, 1003
BsaHI GRCGYC 2 cut(s) 5, 393
BsaI GGTCTC 2 cut(s) 514, 935
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 4 cut(s) 205, 374, 694, 880
BsaXI ACNNNNNCTCC 4 cut(s) 346, 376, 896, 926
Bsc4I CCNNNNNNNGG 6 cut(s) 133, 368, 505, 511, 524, 709
Bse118I RCCGGY 4 cut(s) 227, 308, 762, 952
Bse1I ACTGG 2 cut(s) 729, 1014
BseAI TCCGGA 1 cut(s) 205
BseBI CCWGG 2 cut(s) 704, 935
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 3 cut(s) 36, 87, 1042
BseLI CCNNNNNNNGG 6 cut(s) 133, 368, 505, 511, 524, 709
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 2 cut(s) 729, 1014
BseRI GAGGAG 7 cut(s) 23, 32, 44, 55, 239, 320, 995
BseXI GCAGC 5 cut(s) 96, 351, 658, 852, 961
Bsh1285I CGRYCG 1 cut(s) 558
BshFI GGCC 2 cut(s) 231, 824
BshNI GGYRCC 2 cut(s) 311, 371
BsiEI CGRYCG 1 cut(s) 558
BsiHKCI CYCGRG 1 cut(s) 146
BslFI GGGAC 3 cut(s) 148, 155, 814
BslI CCNNNNNNNGG 6 cut(s) 133, 368, 505, 511, 524, 709
BsmAI GTCTC 4 cut(s) 31, 160, 514, 935
BsmBI CGTCTC 2 cut(s) 31, 160
BsmFI GGGAC 3 cut(s) 148, 155, 814
BsnI GGCC 2 cut(s) 231, 824
Bso31I GGTCTC 2 cut(s) 514, 935
BsoBI CYCGRG 1 cut(s) 146
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 8 cut(s) 15, 318, 420, 441, 514, 555, 640, 735
Bsp19I CCATGG 1 cut(s) 132
BspANI GGCC 2 cut(s) 231, 824
BspCNI CTCAG 1 cut(s) 172
BspEI TCCGGA 1 cut(s) 205
BspLI GGNNCC 6 cut(s) 313, 373, 437, 516, 589, 729
BspMAI CTGCAG 2 cut(s) 648, 979
BspPI GGATC 3 cut(s) 313, 509, 522
BspT107I GGYRCC 2 cut(s) 311, 371
BspTNI GGTCTC 2 cut(s) 514, 935
BsrBI CCGCTC 1 cut(s) 71
BsrFI RCCGGY 4 cut(s) 227, 308, 762, 952
BsrI ACTGG 2 cut(s) 729, 1014
BssAI RCCGGY 4 cut(s) 227, 308, 762, 952
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 8 cut(s) 15, 318, 420, 441, 514, 555, 640, 735
BssNI GRCGYC 2 cut(s) 5, 393
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 2 cut(s) 704, 935
Bst4CI ACNGT 4 cut(s) 545, 685, 805, 1046
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 2 cut(s) 5, 393
BstC8I GCNNGC 6 cut(s) 225, 229, 233, 310, 764, 954
BstDEI CTNAG 1 cut(s) 159
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 3 cut(s) 36, 87, 1042
BstHHI GCGC 2 cut(s) 202, 964
BstKTI GATC 8 cut(s) 18, 321, 423, 444, 517, 558, 643, 738
BstMAI GTCTC 4 cut(s) 31, 160, 514, 935
BstMBI GATC 8 cut(s) 15, 318, 420, 441, 514, 555, 640, 735
BstMCI CGRYCG 1 cut(s) 558
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 2 cut(s) 704, 935
BstNSI RCATGY 1 cut(s) 901
BstSCI CCNGG 5 cut(s) 504, 702, 824, 933, 1001
BstSFI CTRYAG 2 cut(s) 644, 975
BstV1I GCAGC 5 cut(s) 96, 351, 658, 852, 961
BstV2I GAAGAC 1 cut(s) 978
BstX2I RGATCY 2 cut(s) 318, 514
BstYI RGATCY 2 cut(s) 318, 514
BsuI GTATCC 1 cut(s) 608
BsuRI GGCC 2 cut(s) 231, 824
BtgI CCRYGG 1 cut(s) 132
BtrI CACGTC 1 cut(s) 751
BtsCI GGATG 3 cut(s) 36, 87, 1042
BtsIMutI CAGTG 2 cut(s) 799, 1051
Cac8I GCNNGC 6 cut(s) 225, 229, 233, 310, 764, 954
CfoI GCGC 2 cut(s) 202, 964
Cfr10I RCCGGY 4 cut(s) 227, 308, 762, 952
Cfr13I GGNCC 3 cut(s) 606, 727, 774
CseI GACGC 1 cut(s) 382
Csp6I GTAC 2 cut(s) 546, 886
CviAII CATG 6 cut(s) 133, 482, 652, 898, 926, 949
CviQI GTAC 2 cut(s) 546, 886
DdeI CTNAG 1 cut(s) 159
DpnI GATC 8 cut(s) 17, 320, 422, 443, 516, 557, 642, 737
DpnII GATC 8 cut(s) 15, 318, 420, 441, 514, 555, 640, 735
EaeI YGGCCR 2 cut(s) 229, 822
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EciI GGCGGA 2 cut(s) 202, 971
Eco130I CCWWGG 1 cut(s) 132
Eco31I GGTCTC 2 cut(s) 514, 935
Eco47I GGWCC 3 cut(s) 606, 727, 774
Eco88I CYCGRG 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 702, 933
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
Esp3I CGTCTC 2 cut(s) 31, 160
FaeI CATG 6 cut(s) 136, 485, 655, 901, 929, 952
FaiI YATR 9 cut(s) 134, 483, 653, 819, 821, 891, 899, 927, 950
FaqI GGGAC 3 cut(s) 148, 155, 814
FatI CATG 6 cut(s) 132, 481, 651, 897, 925, 948
FauI CCCGC 4 cut(s) 89, 313, 496, 518
FbaI TGATCA 1 cut(s) 441
Fnu4HI GCNGC 8 cut(s) 85, 99, 340, 411, 570, 647, 866, 975
FokI GGATG 3 cut(s) 23, 74, 1049
Fsp4HI GCNGC 8 cut(s) 85, 99, 340, 411, 570, 647, 866, 975
GlaI GCGC 2 cut(s) 201, 963
GluI GCNGC 8 cut(s) 85, 99, 340, 411, 570, 647, 866, 975
GsuI CTGGAG 1 cut(s) 917
HaeIII GGCC 2 cut(s) 231, 824
HgaI GACGC 1 cut(s) 382
HhaI GCGC 2 cut(s) 202, 964
Hin1I GRCGYC 2 cut(s) 5, 393
Hin1II CATG 6 cut(s) 136, 485, 655, 901, 929, 952
Hin6I GCGC 2 cut(s) 200, 962
HinP1I GCGC 2 cut(s) 200, 962
HincII GTYRAC 2 cut(s) 681, 700
HindII GTYRAC 2 cut(s) 681, 700
HphI GGTGA 6 cut(s) 10, 181, 346, 408, 796, 823
Hpy166II GTNNAC 4 cut(s) 681, 700, 831, 886
Hpy188I TCNGA 7 cut(s) 115, 452, 514, 519, 672, 778, 839
Hpy188III TCNNGA 7 cut(s) 146, 206, 322, 439, 638, 661, 846
Hpy8I GTNNAC 4 cut(s) 681, 700, 831, 886
HpyAV CCTTC 5 cut(s) 226, 375, 543, 578, 791
HpyCH4III ACNGT 4 cut(s) 545, 685, 805, 1046
HpyCH4IV ACGT 2 cut(s) 750, 858
HpyCH4V TGCA 3 cut(s) 646, 893, 977
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 2 cut(s) 750, 858
Hsp92I GRCGYC 2 cut(s) 5, 393
Hsp92II CATG 6 cut(s) 136, 485, 655, 901, 929, 952
HspAI GCGC 2 cut(s) 200, 962
Kpn2I TCCGGA 1 cut(s) 205
KroI GCCGGC 4 cut(s) 227, 308, 762, 952
KroNI GCCGGC 4 cut(s) 229, 310, 764, 954
Ksp22I TGATCA 1 cut(s) 441
Kzo9I GATC 8 cut(s) 15, 318, 420, 441, 514, 555, 640, 735
LmnI GCTCC 5 cut(s) 306, 347, 490, 587, 697
Lsp1109I GCAGC 5 cut(s) 96, 351, 658, 852, 961
LweI GCATC 1 cut(s) 96
MaeII ACGT 2 cut(s) 750, 858
MaeIII GTNAC 2 cut(s) 352, 400
MalI GATC 8 cut(s) 17, 320, 422, 443, 516, 557, 642, 737
MbiI CCGCTC 1 cut(s) 71
MboI GATC 8 cut(s) 15, 318, 420, 441, 514, 555, 640, 735
MboII GAAGA 5 cut(s) 37, 457, 978, 980, 1007
MflI RGATCY 2 cut(s) 318, 514
MluCI AATT 5 cut(s) 254, 378, 475, 787, 1049
MlyI GAGTC 6 cut(s) 203, 319, 462, 905, 949, 992
MmeI TCCRAC 1 cut(s) 836
MroI TCCGGA 1 cut(s) 205
MroNI GCCGGC 4 cut(s) 227, 308, 762, 952
MspR9I CCNGG 5 cut(s) 506, 704, 826, 935, 1003
MvaI CCWGG 2 cut(s) 704, 935
MwoI GCNNNNNNNGC 1 cut(s) 272
NaeI GCCGGC 4 cut(s) 229, 310, 764, 954
NciI CCSGG 3 cut(s) 506, 826, 1003
NcoI CCATGG 1 cut(s) 132
NdeII GATC 8 cut(s) 15, 318, 420, 441, 514, 555, 640, 735
NgoMIV GCCGGC 4 cut(s) 227, 308, 762, 952
NlaIII CATG 6 cut(s) 136, 485, 655, 901, 929, 952
NlaIV GGNNCC 6 cut(s) 313, 373, 437, 516, 589, 729
NmuCI GTSAC 2 cut(s) 352, 400
NspI RCATGY 1 cut(s) 901
PaeR7I CTCGAG 1 cut(s) 146
PciI ACATGT 1 cut(s) 897
PcsI WCGNNNNNNNCGW 1 cut(s) 536
PdiI GCCGGC 4 cut(s) 229, 310, 764, 954
PfeI GAWTC 5 cut(s) 116, 501, 715, 840, 1022
PflMI CCANNNNNTGG 1 cut(s) 709
PfoI TCCNGGA 1 cut(s) 933
PkrI GCNGC 8 cut(s) 86, 100, 341, 412, 571, 648, 867, 976
Ple19I CGATCG 1 cut(s) 558
PleI GAGTC 6 cut(s) 203, 319, 461, 905, 948, 991
PpsI GAGTC 6 cut(s) 203, 319, 461, 905, 948, 991
PscI ACATGT 1 cut(s) 897
Psp6I CCWGG 2 cut(s) 702, 933
PspGI CCWGG 2 cut(s) 702, 933
PspN4I GGNNCC 6 cut(s) 313, 373, 437, 516, 589, 729
PspPI GGNCC 3 cut(s) 606, 727, 774
PstI CTGCAG 2 cut(s) 648, 979
PsuI RGATCY 2 cut(s) 318, 514
PvuI CGATCG 1 cut(s) 558
RsaI GTAC 2 cut(s) 547, 887
RsaNI GTAC 2 cut(s) 546, 886
SatI GCNGC 8 cut(s) 85, 99, 340, 411, 570, 647, 866, 975
Sau3AI GATC 8 cut(s) 15, 318, 420, 441, 514, 555, 640, 735
Sau96I GGNCC 3 cut(s) 606, 727, 774
SchI GAGTC 6 cut(s) 203, 319, 462, 905, 949, 992
ScrFI CCNGG 5 cut(s) 506, 704, 826, 935, 1003
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 2 cut(s) 644, 975
Sfr274I CTCGAG 1 cut(s) 146
SinI GGWCC 3 cut(s) 606, 727, 774
SlaI CTCGAG 1 cut(s) 146
SmlI CTYRAG 2 cut(s) 146, 844
SmoI CTYRAG 2 cut(s) 146, 844
Sse9I AATT 5 cut(s) 254, 378, 475, 787, 1049
StyD4I CCNGG 5 cut(s) 504, 702, 824, 933, 1001
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 4 cut(s) 545, 685, 805, 1046
TaiI ACGT 2 cut(s) 753, 861
TaqI TCGA 6 cut(s) 14, 147, 456, 468, 539, 734
TasI AATT 5 cut(s) 254, 378, 475, 787, 1049
TatI WGTACW 1 cut(s) 885
TauI GCSGC 3 cut(s) 101, 413, 572
TfiI GAWTC 5 cut(s) 116, 501, 715, 840, 1022
TscAI CASTG 2 cut(s) 799, 1051
TseFI GTSAC 2 cut(s) 352, 400
TseI GCWGC 5 cut(s) 84, 339, 646, 865, 974
Tsp45I GTSAC 2 cut(s) 352, 400
TspDTI ATGAA 1 cut(s) 914
TspGWI ACGGA 1 cut(s) 904
TspRI CASTG 2 cut(s) 799, 1051
Van91I CCANNNNNTGG 1 cut(s) 709
VpaK11BI GGWCC 3 cut(s) 606, 727, 774
XapI RAATTY 4 cut(s) 378, 475, 787, 1049
XceI RCATGY 1 cut(s) 901
XhoI CTCGAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.