Rh2BG676400

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000614
Physical Location & Seq
Reverse (-)
88742670 .. 88743137
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG676400.1

Sequence Viewer

Length: 468 bp
ATGGCCGCGTTTCTTGACGCCCAGCTGATCGGGTTCAACCGGAAGACGGCCCTGACGGTGTTCGCAGCGGTCGACGACGCCGTCGAAGACTACGCGAGGAACAGCTCCGATTACTCGGAGATTTTCCGGCAGCACGTGGTGCCGAGGCTGCTGACGTGGCAAGACCTGGTGGCGCTTGATGACGGGACGATGCTGCCTACTTTTGAAGAAGGGTTCATGATCAATGTGATCAAGATGGGTGACGTCCCTGTGCTCAATGATGTTCCGGTGGCCGATCAGGACCTCTACCTGAGCCGCTTCCTGGTTGTTCATGGCGTCAATCACTTGCTGACGTCACAGCAGCAGATGGTGACGCAAGAAGAAGACCCGGCTGGAGATCAAGAAGATGGTGGTGCTGGTTTCACTGATGGGTTTGTTGCCAATGTTGCTGATCAGATCAACCCTCAAGGTTTTGATGACTATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

155

Amino Acids

17.15

Weight (kDa)

4.05

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AatII GACGTC 2 cut(s) 246, 335
AccB1I GGYRCC 1 cut(s) 139
AccI GTMKAC 1 cut(s) 72
AccII CGCG 2 cut(s) 8, 95
AciI CCGC 3 cut(s) 6, 68, 295
AcoI YGGCCR 2 cut(s) 3, 270
AcvI CACGTG 1 cut(s) 136
AcyI GRCGYC 5 cut(s) 18, 78, 243, 315, 332
AdeI CACNNNGTG 1 cut(s) 139
AfiI CCNNNNNNNGG 2 cut(s) 46, 301
AgsI TTSAA 2 cut(s) 37, 206
AjiI CACGTC 1 cut(s) 156
AjnI CCWGG 2 cut(s) 165, 300
AluBI AGCT 2 cut(s) 25, 105
AluI AGCT 2 cut(s) 25, 105
Alw21I GWGCWC 1 cut(s) 255
AoxI GGCC 3 cut(s) 3, 48, 270
ApeKI GCWGC 5 cut(s) 65, 130, 148, 193, 340
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 2 cut(s) 49, 280
AsuC2I CCSGG 1 cut(s) 368
AsuHPI GGTGA 2 cut(s) 251, 361
AvaII GGWCC 1 cut(s) 280
BanI GGYRCC 1 cut(s) 139
BbrPI CACGTG 1 cut(s) 136
BbsI GAAGAC 3 cut(s) 50, 93, 369
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 5 cut(s) 77, 135, 142, 180, 352
BccI CCATC 4 cut(s) 229, 340, 380, 401
BceAI ACGGC 2 cut(s) 63, 65
BciT130I CCWGG 2 cut(s) 167, 302
BclI TGATCA 3 cut(s) 219, 228, 430
BcnI CCSGG 1 cut(s) 368
BfoI RGCGCY 1 cut(s) 176
BisI GCNGC 7 cut(s) 6, 66, 131, 149, 194, 295, 341
BlsI GCNGC 7 cut(s) 7, 67, 132, 150, 195, 296, 342
Bme1390I CCNGG 3 cut(s) 167, 302, 368
Bme18I GGWCC 1 cut(s) 280
BmgBI CACGTC 1 cut(s) 156
BmgT120I GGNCC 2 cut(s) 49, 280
BmiI GGNNCC 1 cut(s) 141
BmrFI CCNGG 3 cut(s) 167, 302, 368
BmsI GCATC 1 cut(s) 180
BpiI GAAGAC 3 cut(s) 50, 93, 369
BpmI CTGGAG 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 429
BpuMI CCSGG 1 cut(s) 368
BsaAI YACGTR 1 cut(s) 136
BsaBI GATNNNNATC 1 cut(s) 459
BsaHI GRCGYC 5 cut(s) 18, 78, 243, 315, 332
BsaJI CCNNGG 1 cut(s) 143
BsaWI WCCGGW 2 cut(s) 39, 265
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 301
Bse8I GATNNNNATC 1 cut(s) 459
BseBI CCWGG 2 cut(s) 167, 302
BseDI CCNNGG 1 cut(s) 143
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 2 cut(s) 46, 301
BseMII CTCAG 1 cut(s) 281
BseXI GCAGC 5 cut(s) 77, 135, 142, 180, 352
BseYI CCCAGC 1 cut(s) 21
Bsh1236I CGCG 2 cut(s) 8, 95
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 3 cut(s) 5, 50, 272
BshNI GGYRCC 1 cut(s) 139
BsiEI CGRYCG 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 255
BsiSI CCGG 4 cut(s) 40, 127, 266, 368
BslFI GGGAC 2 cut(s) 199, 230
BslI CCNNNNNNNGG 2 cut(s) 46, 301
BsmFI GGGAC 2 cut(s) 199, 230
BsnI GGCC 3 cut(s) 5, 50, 272
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 7 cut(s) 27, 219, 228, 274, 376, 430, 435
BspACI CCGC 3 cut(s) 6, 68, 295
BspANI GGCC 3 cut(s) 5, 50, 272
BspCNI CTCAG 1 cut(s) 282
BspFNI CGCG 2 cut(s) 8, 95
BspHI TCATGA 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 143
BssMI GATC 7 cut(s) 27, 219, 228, 274, 376, 430, 435
BssNI GRCGYC 5 cut(s) 18, 78, 243, 315, 332
Bst2UI CCWGG 2 cut(s) 167, 302
Bst4CI ACNGT 1 cut(s) 58
BstACI GRCGYC 5 cut(s) 18, 78, 243, 315, 332
BstAPI GCANNNNNTGC 1 cut(s) 139
BstBAI YACGTR 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 290
BstFNI CGCG 2 cut(s) 8, 95
BstH2I RGCGCY 1 cut(s) 176
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 7 cut(s) 30, 222, 231, 277, 379, 433, 438
BstMBI GATC 7 cut(s) 27, 219, 228, 274, 376, 430, 435
BstMCI CGRYCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 4 cut(s) 139, 148, 157, 425
BstNI CCWGG 2 cut(s) 167, 302
BstSCI CCNGG 3 cut(s) 165, 300, 366
BstUI CGCG 2 cut(s) 8, 95
BstV1I GCAGC 5 cut(s) 77, 135, 142, 180, 352
BstV2I GAAGAC 3 cut(s) 50, 93, 369
BsuRI GGCC 3 cut(s) 5, 50, 272
BtrI CACGTC 1 cut(s) 156
BtsIMutI CAGTG 2 cut(s) 402, 463
CciI TCATGA 1 cut(s) 216
CfoI GCGC 1 cut(s) 175
Cfr13I GGNCC 2 cut(s) 49, 280
CseI GACGC 4 cut(s) 26, 86, 304, 361
CsiI ACCWGGT 1 cut(s) 165
CviAII CATG 2 cut(s) 217, 311
CviJI RGCY 8 cut(s) 5, 25, 50, 105, 148, 272, 294, 371
CviKI_1 RGCY 8 cut(s) 5, 25, 50, 105, 148, 272, 294, 371
DdeI CTNAG 1 cut(s) 290
DpnI GATC 7 cut(s) 29, 221, 230, 276, 378, 432, 437
DpnII GATC 7 cut(s) 27, 219, 228, 274, 376, 430, 435
DraIII CACNNNGTG 1 cut(s) 139
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 2 cut(s) 3, 270
Eco47I GGWCC 1 cut(s) 280
Eco72I CACGTG 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 280
EcoRII CCWGG 2 cut(s) 165, 300
FaeI CATG 2 cut(s) 220, 314
FaiI YATR 2 cut(s) 218, 312
FaqI GGGAC 2 cut(s) 199, 230
FatI CATG 2 cut(s) 216, 310
FbaI TGATCA 3 cut(s) 219, 228, 430
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 7 cut(s) 6, 66, 131, 149, 194, 295, 341
Fsp4HI GCNGC 7 cut(s) 6, 66, 131, 149, 194, 295, 341
GlaI GCGC 1 cut(s) 174
GluI GCNGC 7 cut(s) 6, 66, 131, 149, 194, 295, 341
GsaI CCCAGC 1 cut(s) 25
GsuI CTGGAG 1 cut(s) 393
HaeII RGCGCY 1 cut(s) 176
HaeIII GGCC 3 cut(s) 5, 50, 272
HapII CCGG 4 cut(s) 40, 127, 266, 368
HgaI GACGC 4 cut(s) 26, 86, 304, 361
HhaI GCGC 1 cut(s) 175
Hin1I GRCGYC 5 cut(s) 18, 78, 243, 315, 332
Hin1II CATG 2 cut(s) 220, 314
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HpaII CCGG 4 cut(s) 40, 127, 266, 368
HphI GGTGA 2 cut(s) 251, 361
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 3 cut(s) 109, 118, 435
Hpy188III TCNNGA 5 cut(s) 14, 217, 232, 278, 380
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 3 cut(s) 77, 80, 86
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 4 cut(s) 135, 155, 243, 332
HpyF10VI GCNNNNNNNGC 4 cut(s) 139, 148, 157, 425
HpyF3I CTNAG 1 cut(s) 290
HpySE526I ACGT 4 cut(s) 135, 155, 243, 332
Hsp92I GRCGYC 5 cut(s) 18, 78, 243, 315, 332
Hsp92II CATG 2 cut(s) 220, 314
HspAI GCGC 1 cut(s) 173
Ksp22I TGATCA 3 cut(s) 219, 228, 430
Kzo9I GATC 7 cut(s) 27, 219, 228, 274, 376, 430, 435
LmnI GCTCC 1 cut(s) 110
Lsp1109I GCAGC 5 cut(s) 77, 135, 142, 180, 352
LweI GCATC 1 cut(s) 180
MabI ACCWGGT 1 cut(s) 165
MaeII ACGT 4 cut(s) 135, 155, 243, 332
MaeIII GTNAC 3 cut(s) 239, 333, 349
MalI GATC 7 cut(s) 29, 221, 230, 276, 378, 432, 437
MboI GATC 7 cut(s) 27, 219, 228, 274, 376, 430, 435
MboII GAAGA 6 cut(s) 55, 98, 218, 371, 374, 395
MhlI GDGCHC 1 cut(s) 255
MnlI CCTC 4 cut(s) 90, 138, 293, 453
MspA1I CMGCKG 2 cut(s) 25, 68
MspI CCGG 4 cut(s) 40, 127, 266, 368
MspR9I CCNGG 3 cut(s) 167, 302, 368
MvaI CCWGG 2 cut(s) 167, 302
MvnI CGCG 2 cut(s) 8, 95
MwoI GCNNNNNNNGC 4 cut(s) 139, 148, 157, 425
NciI CCSGG 1 cut(s) 368
NdeII GATC 7 cut(s) 27, 219, 228, 274, 376, 430, 435
NlaIII CATG 2 cut(s) 220, 314
NlaIV GGNNCC 1 cut(s) 141
NmeAIII GCCGAG 1 cut(s) 168
NmuCI GTSAC 3 cut(s) 239, 333, 349
PagI TCATGA 1 cut(s) 216
PcsI WCGNNNNNNNCGW 3 cut(s) 69, 78, 81
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 7 cut(s) 7, 67, 132, 150, 195, 296, 342
PmaCI CACGTG 1 cut(s) 136
PmlI CACGTG 1 cut(s) 136
Ppu21I YACGTR 1 cut(s) 136
PpuMI RGGWCCY 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 280
Psp6I CCWGG 2 cut(s) 165, 300
PspCI CACGTG 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 21
PspGI CCWGG 2 cut(s) 165, 300
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 2 cut(s) 49, 280
PspPPI RGGWCCY 1 cut(s) 280
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 25
SalI GTCGAC 1 cut(s) 71
SatI GCNGC 7 cut(s) 6, 66, 131, 149, 194, 295, 341
Sau3AI GATC 7 cut(s) 27, 219, 228, 274, 376, 430, 435
Sau96I GGNCC 2 cut(s) 49, 280
ScrFI CCNGG 3 cut(s) 167, 302, 368
SduI GDGCHC 1 cut(s) 255
SexAI ACCWGGT 1 cut(s) 165
SfaNI GCATC 1 cut(s) 180
SinI GGWCC 1 cut(s) 280
SmlI CTYRAG 1 cut(s) 444
SmoI CTYRAG 1 cut(s) 444
SsiI CCGC 3 cut(s) 6, 68, 295
StyD4I CCNGG 3 cut(s) 165, 300, 366
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 4 cut(s) 138, 158, 246, 335
TaqI TCGA 2 cut(s) 72, 84
TauI GCSGC 2 cut(s) 8, 297
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 3 cut(s) 239, 333, 349
TseI GCWGC 5 cut(s) 65, 130, 148, 193, 340
Tsp45I GTSAC 3 cut(s) 239, 333, 349
TspDTI ATGAA 2 cut(s) 205, 299
TspRI CASTG 1 cut(s) 409
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 280
XmiI GTMKAC 1 cut(s) 72
ZraI GACGTC 2 cut(s) 244, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.