RchiOBHm_Chr4g0440841

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000614
Physical Location & Seq
Forward (+)
62813680 .. 62815007
1328 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40878

Sequence Viewer

Length: 1059 bp
ATGGCGTCGCCGTCGATCACCGCCCTCTCTCTCCTCCTCCTCCTCCTCATCTCCCTCCTCTCTCTCTCCTCCGCTCTCCCCTCCCGCAGCATCCTCAACGCCGCCGAAGTACTCTCCGATTCCGGCTACCTCTCCATGGCTCTCACTCTCGAGGTCGTCTCTCAGTCCCTCGTCCCCAAGTCCCCGTCGCTTACCATCTTTGCGCCGCCGGACTCCGCCTTCAAGCGAGCCGGCCAGCCCTCACTCTCTCTCCTCCAATTCCACTTCGCCCCTCTCGCTCTCCCCCTCCAAACCCTAAAATCGCTCCCCGCCGGCACAAAGATCCCGACTCTCCTCTCCGGCAGCTCCCTCGTCGTCACCTCGCCGCCTTCAGGCACCGGACTTTCTCTCAACGGCGTCAGGGTCACAACCGCCGCCTCTCCGATCTACGACGACGGGTTCCTGATCATTCTCGGAGTCGAGGACTTCTTCGACCCGAACTTCCATGCTCCCGCCCCGACCCGAATCCCGGTTTCGGATCCGATGTGCGGGTCGCCTTCGTCGAACGGTACAAGCACGATCGGGTTTCCGGCGGCTTCTTGGTTTGAAGGAGCCAAAGGCGTGATGAGGTCCAATGGATACAGAGTGATGGCTTCGTTTCTTGATCTGCAGCTCATGGGGTTCAAGAACCCTCCGAGTTCGTTGACCGTCTTTGCTCCGGTTGACCAGGAGGTGGAGAATCCTCTACTGGACCCGTCGATCTTTCTACGACACGTCGTTCCTTGCAGGCTTGTTTGGTCCGATTTGGTGAATTTCAGTGAAGGGACGGTGCTTCCAACCTATATGGCCGGGTTCACCATCAGAATCTCAAGAAACGGCGACGTTTTGCTGCTCAACGAAGTTCCGGTGTACTATGCAAACATGTATTACAGCGACTCCGTTGTGGTTCATGGTCTCCAGGAGAGTCTTGTAATGCCGGCAGAGGCGCAAGAAGAAGCTGCAGAGGAGTCTTCACAGGAAGAAGCTGGGAGTGAAACCAGTGATGATTCACTTCTAATGGATGATGACAGTGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

352

Amino Acids

37.48

Weight (kDa)

4.35

Isoelectric Point (pI)

57.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 374
AccB7I CCANNNNNTGG 1 cut(s) 712
AccBSI CCGCTC 1 cut(s) 74
AclWI GGATC 3 cut(s) 316, 512, 525
AcoI YGGCCR 2 cut(s) 232, 825
AcsI RAATTY 2 cut(s) 790, 1052
AcuI CTGAAG 1 cut(s) 354
AcyI GRCGYC 2 cut(s) 5, 396
AfaI GTAC 3 cut(s) 111, 550, 890
AfiI CCNNNNNNNGG 6 cut(s) 136, 371, 508, 514, 527, 712
AflIII ACRYGT 2 cut(s) 751, 900
AgsI TTSAA 3 cut(s) 223, 587, 664
AjiI CACGTC 1 cut(s) 754
AjnI CCWGG 2 cut(s) 705, 936
AluBI AGCT 4 cut(s) 345, 652, 977, 1004
AluI AGCT 4 cut(s) 345, 652, 977, 1004
Alw26I GTCTC 2 cut(s) 163, 938
AlwI GGATC 3 cut(s) 316, 512, 525
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 2 cut(s) 232, 825
ApeKI GCWGC 5 cut(s) 87, 342, 649, 868, 977
ApoI RAATTY 2 cut(s) 790, 1052
AspLEI GCGC 2 cut(s) 205, 967
AspS9I GGNCC 3 cut(s) 609, 730, 777
AsuC2I CCSGG 2 cut(s) 509, 829
AsuHPI GGTGA 4 cut(s) 10, 349, 799, 826
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 3 cut(s) 609, 730, 777
BamHI GGATCC 1 cut(s) 517
BanI GGYRCC 1 cut(s) 374
BbsI GAAGAC 1 cut(s) 981
BbvI GCAGC 5 cut(s) 99, 354, 661, 855, 964
BccI CCATC 3 cut(s) 203, 622, 845
BceAI ACGGC 2 cut(s) 409, 871
BcgI CGANNNNNNTGC 2 cut(s) 331, 365
BciT130I CCWGG 2 cut(s) 707, 938
BciVI GTATCC 1 cut(s) 611
BclI TGATCA 1 cut(s) 444
BcnI CCSGG 2 cut(s) 509, 829
BcoDI GTCTC 2 cut(s) 163, 938
BfmI CTRYAG 2 cut(s) 647, 978
BfuI GTATCC 1 cut(s) 611
BmcAI AGTACT 1 cut(s) 111
Bme1390I CCNGG 4 cut(s) 509, 707, 829, 938
Bme18I GGWCC 3 cut(s) 609, 730, 777
BmeT110I CYCGRG 1 cut(s) 149
BmgBI CACGTC 1 cut(s) 754
BmgT120I GGNCC 3 cut(s) 609, 730, 777
BmiI GGNNCC 5 cut(s) 376, 440, 519, 592, 732
BmrFI CCNGG 4 cut(s) 509, 707, 829, 938
BmsI GCATC 1 cut(s) 99
BpiI GAAGAC 1 cut(s) 981
BplI GAGNNNNNCTC 2 cut(s) 143, 175
BpmI CTGGAG 1 cut(s) 920
BpuEI CTTGAG 1 cut(s) 832
BpuMI CCSGG 2 cut(s) 509, 829
BsaHI GRCGYC 2 cut(s) 5, 396
BsaI GGTCTC 1 cut(s) 938
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 3 cut(s) 377, 697, 883
BsaXI ACNNNNNCTCC 4 cut(s) 234, 264, 899, 929
Bsc4I CCNNNNNNNGG 6 cut(s) 136, 371, 508, 514, 527, 712
Bse118I RCCGGY 3 cut(s) 230, 311, 955
Bse1I ACTGG 2 cut(s) 732, 1017
BseBI CCWGG 2 cut(s) 707, 938
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 2 cut(s) 90, 1045
BseLI CCNNNNNNNGG 6 cut(s) 136, 371, 508, 514, 527, 712
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 2 cut(s) 732, 1017
BseXI GCAGC 5 cut(s) 99, 354, 661, 855, 964
BseYI CCCAGC 1 cut(s) 1004
Bsh1285I CGRYCG 1 cut(s) 561
BshFI GGCC 2 cut(s) 234, 827
BshNI GGYRCC 1 cut(s) 374
BsiEI CGRYCG 1 cut(s) 561
BsiHKCI CYCGRG 1 cut(s) 149
BslFI GGGAC 4 cut(s) 151, 158, 166, 817
BslI CCNNNNNNNGG 6 cut(s) 136, 371, 508, 514, 527, 712
BsmAI GTCTC 2 cut(s) 163, 938
BsmBI CGTCTC 1 cut(s) 163
BsmFI GGGAC 4 cut(s) 151, 158, 166, 817
BsnI GGCC 2 cut(s) 234, 827
Bso31I GGTCTC 1 cut(s) 938
BsoBI CYCGRG 1 cut(s) 149
Bsp143I GATC 8 cut(s) 15, 321, 423, 444, 517, 558, 643, 738
Bsp19I CCATGG 1 cut(s) 135
BspANI GGCC 2 cut(s) 234, 827
BspCNI CTCAG 1 cut(s) 175
BspLI GGNNCC 5 cut(s) 376, 440, 519, 592, 732
BspMAI CTGCAG 2 cut(s) 651, 982
BspPI GGATC 3 cut(s) 316, 512, 525
BspT107I GGYRCC 1 cut(s) 374
BspTNI GGTCTC 1 cut(s) 938
BsrBI CCGCTC 1 cut(s) 74
BsrFI RCCGGY 3 cut(s) 230, 311, 955
BsrI ACTGG 2 cut(s) 732, 1017
BssAI RCCGGY 3 cut(s) 230, 311, 955
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 8 cut(s) 15, 321, 423, 444, 517, 558, 643, 738
BssNI GRCGYC 2 cut(s) 5, 396
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 2 cut(s) 707, 938
Bst4CI ACNGT 4 cut(s) 548, 688, 808, 1049
BstACI GRCGYC 2 cut(s) 5, 396
BstC8I GCNNGC 6 cut(s) 228, 232, 236, 313, 767, 957
BstDEI CTNAG 1 cut(s) 162
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 2 cut(s) 90, 1045
BstHHI GCGC 2 cut(s) 205, 967
BstKTI GATC 8 cut(s) 18, 324, 426, 447, 520, 561, 646, 741
BstMAI GTCTC 2 cut(s) 163, 938
BstMBI GATC 8 cut(s) 15, 321, 423, 444, 517, 558, 643, 738
BstMCI CGRYCG 1 cut(s) 561
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNI CCWGG 2 cut(s) 707, 938
BstNSI RCATGY 1 cut(s) 904
BstSCI CCNGG 4 cut(s) 507, 705, 827, 936
BstSFI CTRYAG 2 cut(s) 647, 978
BstV1I GCAGC 5 cut(s) 99, 354, 661, 855, 964
BstV2I GAAGAC 1 cut(s) 981
BstX2I RGATCY 2 cut(s) 321, 517
BstYI RGATCY 2 cut(s) 321, 517
BsuI GTATCC 1 cut(s) 611
BsuRI GGCC 2 cut(s) 234, 827
BtgI CCRYGG 1 cut(s) 135
BtrI CACGTC 1 cut(s) 754
BtsCI GGATG 2 cut(s) 90, 1045
BtsIMutI CAGTG 3 cut(s) 802, 1024, 1054
Cac8I GCNNGC 6 cut(s) 228, 232, 236, 313, 767, 957
CfoI GCGC 2 cut(s) 205, 967
Cfr10I RCCGGY 3 cut(s) 230, 311, 955
Cfr13I GGNCC 3 cut(s) 609, 730, 777
CseI GACGC 1 cut(s) 385
Csp6I GTAC 3 cut(s) 110, 549, 889
CviAII CATG 5 cut(s) 136, 485, 655, 901, 929
CviQI GTAC 3 cut(s) 110, 549, 889
DdeI CTNAG 1 cut(s) 162
DpnI GATC 8 cut(s) 17, 323, 425, 446, 519, 560, 645, 740
DpnII GATC 8 cut(s) 15, 321, 423, 444, 517, 558, 643, 738
EaeI YGGCCR 2 cut(s) 232, 825
EciI GGCGGA 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 938
Eco47I GGWCC 3 cut(s) 609, 730, 777
Eco57I CTGAAG 1 cut(s) 354
Eco88I CYCGRG 1 cut(s) 149
EcoRII CCWGG 2 cut(s) 705, 936
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 5 cut(s) 139, 488, 658, 904, 932
FaiI YATR 8 cut(s) 137, 486, 656, 822, 824, 894, 902, 930
FaqI GGGAC 4 cut(s) 151, 158, 166, 817
FatI CATG 5 cut(s) 135, 484, 654, 900, 928
FauI CCCGC 4 cut(s) 92, 316, 499, 521
FbaI TGATCA 1 cut(s) 444
FokI GGATG 2 cut(s) 77, 1052
GlaI GCGC 2 cut(s) 204, 966
GsaI CCCAGC 1 cut(s) 1008
GsuI CTGGAG 1 cut(s) 920
HaeIII GGCC 2 cut(s) 234, 827
HgaI GACGC 1 cut(s) 385
HhaI GCGC 2 cut(s) 205, 967
Hin1I GRCGYC 2 cut(s) 5, 396
Hin1II CATG 5 cut(s) 139, 488, 658, 904, 932
Hin6I GCGC 2 cut(s) 203, 965
HinP1I GCGC 2 cut(s) 203, 965
HincII GTYRAC 2 cut(s) 684, 703
HindII GTYRAC 2 cut(s) 684, 703
HphI GGTGA 4 cut(s) 10, 349, 799, 826
Hpy166II GTNNAC 4 cut(s) 684, 703, 834, 889
Hpy188I TCNGA 8 cut(s) 118, 423, 455, 517, 522, 675, 781, 842
Hpy188III TCNNGA 6 cut(s) 149, 325, 442, 641, 664, 849
Hpy8I GTNNAC 4 cut(s) 684, 703, 834, 889
HpyAV CCTTC 5 cut(s) 229, 378, 546, 581, 794
HpyCH4III ACNGT 4 cut(s) 548, 688, 808, 1049
HpyCH4IV ACGT 2 cut(s) 753, 861
HpyCH4V TGCA 4 cut(s) 649, 765, 896, 980
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 2 cut(s) 753, 861
Hsp92I GRCGYC 2 cut(s) 5, 396
Hsp92II CATG 5 cut(s) 139, 488, 658, 904, 932
HspAI GCGC 2 cut(s) 203, 965
KroI GCCGGC 3 cut(s) 230, 311, 955
KroNI GCCGGC 3 cut(s) 232, 313, 957
Ksp22I TGATCA 1 cut(s) 444
Kzo9I GATC 8 cut(s) 15, 321, 423, 444, 517, 558, 643, 738
LmnI GCTCC 5 cut(s) 309, 350, 493, 590, 700
Lsp1109I GCAGC 5 cut(s) 99, 354, 661, 855, 964
LweI GCATC 1 cut(s) 99
MaeII ACGT 2 cut(s) 753, 861
MaeIII GTNAC 2 cut(s) 355, 403
MalI GATC 8 cut(s) 17, 323, 425, 446, 519, 560, 645, 740
MbiI CCGCTC 1 cut(s) 74
MboI GATC 8 cut(s) 15, 321, 423, 444, 517, 558, 643, 738
MboII GAAGA 4 cut(s) 460, 981, 983, 1010
MflI RGATCY 2 cut(s) 321, 517
MluCI AATT 3 cut(s) 257, 790, 1052
MlyI GAGTC 6 cut(s) 206, 322, 465, 908, 952, 995
MmeI TCCRAC 1 cut(s) 839
MroNI GCCGGC 3 cut(s) 230, 311, 955
MspR9I CCNGG 4 cut(s) 509, 707, 829, 938
MvaI CCWGG 2 cut(s) 707, 938
MwoI GCNNNNNNNGC 1 cut(s) 275
NaeI GCCGGC 3 cut(s) 232, 313, 957
NciI CCSGG 2 cut(s) 509, 829
NcoI CCATGG 1 cut(s) 135
NdeII GATC 8 cut(s) 15, 321, 423, 444, 517, 558, 643, 738
NgoMIV GCCGGC 3 cut(s) 230, 311, 955
NlaIII CATG 5 cut(s) 139, 488, 658, 904, 932
NlaIV GGNNCC 5 cut(s) 376, 440, 519, 592, 732
NmuCI GTSAC 2 cut(s) 355, 403
NspI RCATGY 1 cut(s) 904
PaeR7I CTCGAG 1 cut(s) 149
PciI ACATGT 1 cut(s) 900
PcsI WCGNNNNNNNCGW 1 cut(s) 539
PdiI GCCGGC 3 cut(s) 232, 313, 957
PfeI GAWTC 5 cut(s) 119, 504, 718, 843, 1025
PflMI CCANNNNNTGG 1 cut(s) 712
PfoI TCCNGGA 1 cut(s) 936
Ple19I CGATCG 1 cut(s) 561
PleI GAGTC 6 cut(s) 206, 322, 464, 908, 951, 994
PpsI GAGTC 6 cut(s) 206, 322, 464, 908, 951, 994
PscI ACATGT 1 cut(s) 900
Psp6I CCWGG 2 cut(s) 705, 936
PspFI CCCAGC 1 cut(s) 1004
PspGI CCWGG 2 cut(s) 705, 936
PspN4I GGNNCC 5 cut(s) 376, 440, 519, 592, 732
PspPI GGNCC 3 cut(s) 609, 730, 777
PstI CTGCAG 2 cut(s) 651, 982
PsuI RGATCY 2 cut(s) 321, 517
PvuI CGATCG 1 cut(s) 561
RsaI GTAC 3 cut(s) 111, 550, 890
RsaNI GTAC 3 cut(s) 110, 549, 889
Sau3AI GATC 8 cut(s) 15, 321, 423, 444, 517, 558, 643, 738
Sau96I GGNCC 3 cut(s) 609, 730, 777
ScaI AGTACT 1 cut(s) 111
SchI GAGTC 6 cut(s) 206, 322, 465, 908, 952, 995
ScrFI CCNGG 4 cut(s) 509, 707, 829, 938
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 2 cut(s) 647, 978
Sfr274I CTCGAG 1 cut(s) 149
SinI GGWCC 3 cut(s) 609, 730, 777
SlaI CTCGAG 1 cut(s) 149
SmlI CTYRAG 2 cut(s) 149, 847
SmoI CTYRAG 2 cut(s) 149, 847
Sse9I AATT 3 cut(s) 257, 790, 1052
StyD4I CCNGG 4 cut(s) 507, 705, 827, 936
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 4 cut(s) 548, 688, 808, 1049
TaiI ACGT 2 cut(s) 756, 864
TaqI TCGA 6 cut(s) 14, 150, 459, 471, 542, 737
TasI AATT 3 cut(s) 257, 790, 1052
TatI WGTACW 2 cut(s) 109, 888
TauI GCSGC 5 cut(s) 104, 208, 367, 416, 575
TfiI GAWTC 5 cut(s) 119, 504, 718, 843, 1025
TscAI CASTG 3 cut(s) 802, 1024, 1054
TseFI GTSAC 2 cut(s) 355, 403
TseI GCWGC 5 cut(s) 87, 342, 649, 868, 977
Tsp45I GTSAC 2 cut(s) 355, 403
TspDTI ATGAA 1 cut(s) 917
TspGWI ACGGA 1 cut(s) 907
TspRI CASTG 3 cut(s) 802, 1024, 1054
Van91I CCANNNNNTGG 1 cut(s) 712
VpaK11BI GGWCC 3 cut(s) 609, 730, 777
XapI RAATTY 2 cut(s) 790, 1052
XceI RCATGY 1 cut(s) 904
XhoI CTCGAG 1 cut(s) 149
ZrmI AGTACT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.