pycom01g06180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000614
Physical Location & Seq
Forward (+)
6280523 .. 6280885
363 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g06180.1

Sequence Viewer

Length: 363 bp
ATGATCTCGACCTTACTCTCTGTCACCAAGCCACCTTCCGGCGCCCCAATTTCACTCAACAATGTCAAAATAACTTCCGAGTTGCCATTTATGACAATGGGTTACTCATCATTTTCGAAATCGAGGACTTCTTCGACCTCAGCTTTTATCTCATCAACGTCATCATCCTCGTCGCCCTTTTTGGCAACATCTTCTACCTCTATTTTGACCCCCGCATCCTGGCCTTCTACCTCATCTCCTTCCAGATCCCCAAATTCAATCCCATCCCCAAGCCCGACGGGACCTAGGTGCAAAAAAAAAGTTTGGGTTTTTTTCTTTCAATTTTTCTTTTTTTTTTTTTTGGGGAGAGAAAAAGATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.04

Weight (kDa)

10.74

Isoelectric Point (pI)

62.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AciI CCGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 240
AcsI RAATTY 1 cut(s) 253
AcyI GRCGYC 1 cut(s) 42
AfiI CCNNNNNNNGG 2 cut(s) 38, 219
AgsI TTSAA 2 cut(s) 258, 320
AjnI CCWGG 1 cut(s) 218
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
AlwI GGATC 1 cut(s) 240
AoxI GGCC 1 cut(s) 221
ApoI RAATTY 1 cut(s) 253
AspA2I CCTAGG 1 cut(s) 284
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 116
AvaII GGWCC 1 cut(s) 281
AvrII CCTAGG 1 cut(s) 284
BanI GGYRCC 1 cut(s) 41
BbvCI CCTCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 220
BfaI CTAG 1 cut(s) 285
BfoI RGCGCY 1 cut(s) 45
BlnI CCTAGG 1 cut(s) 284
Bme1390I CCNGG 1 cut(s) 220
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 2 cut(s) 43, 282
BmrFI CCNGG 1 cut(s) 220
BmsI GCATC 1 cut(s) 224
Bpu10I CCTNAGC 1 cut(s) 139
Bpu14I TTCGAA 1 cut(s) 116
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 284
BsaXI ACNNNNNCTCC 2 cut(s) 220, 250
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 219
BseBI CCWGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 3 cut(s) 164, 215, 263
BseLI CCNNNNNNNGG 2 cut(s) 38, 219
BseMII CTCAG 1 cut(s) 153
BshFI GGCC 1 cut(s) 223
BshNI GGYRCC 1 cut(s) 41
BsiSI CCGG 1 cut(s) 39
BslFI GGGAC 1 cut(s) 294
BslI CCNNNNNNNGG 2 cut(s) 38, 219
BsmFI GGGAC 1 cut(s) 294
BsnI GGCC 1 cut(s) 223
Bsp119I TTCGAA 1 cut(s) 116
Bsp143I GATC 2 cut(s) 3, 245
BspACI CCGC 1 cut(s) 213
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 1 cut(s) 152
BspLI GGNNCC 2 cut(s) 43, 282
BspPI GGATC 1 cut(s) 240
BspT104I TTCGAA 1 cut(s) 116
BspT107I GGYRCC 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 2 cut(s) 3, 245
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 284
Bst2UI CCWGG 1 cut(s) 220
BstACI GRCGYC 1 cut(s) 42
BstBI TTCGAA 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 139
BstF5I GGATG 3 cut(s) 164, 215, 263
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 2 cut(s) 6, 248
BstMBI GATC 2 cut(s) 3, 245
BstNI CCWGG 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
BsuRI GGCC 1 cut(s) 223
BtsCI GGATG 3 cut(s) 164, 215, 263
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 281
CviJI RGCY 4 cut(s) 31, 143, 223, 273
CviKI_1 RGCY 4 cut(s) 31, 143, 223, 273
DdeI CTNAG 1 cut(s) 139
DinI GGCGCC 1 cut(s) 43
DpnI GATC 2 cut(s) 5, 247
DpnII GATC 2 cut(s) 3, 245
Eco130I CCWWGG 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 284
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 284
FaiI YATR 1 cut(s) 92
FaqI GGGAC 1 cut(s) 294
FauI CCCGC 1 cut(s) 220
FokI GGATG 3 cut(s) 151, 202, 250
FspBI CTAG 1 cut(s) 285
GlaI GCGC 1 cut(s) 43
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 1 cut(s) 223
HapII CCGG 1 cut(s) 39
HhaI GCGC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 42
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HpaII CCGG 1 cut(s) 39
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 2 cut(s) 7, 243
Hpy99I CGWCG 2 cut(s) 175, 280
HpyAV CCTTC 3 cut(s) 45, 234, 249
HpyCH4IV ACGT 1 cut(s) 158
HpyCH4V TGCA 1 cut(s) 291
HpyF3I CTNAG 1 cut(s) 139
HpySE526I ACGT 1 cut(s) 158
Hsp92I GRCGYC 1 cut(s) 42
HspAI GCGC 1 cut(s) 42
KasI GGCGCC 1 cut(s) 41
Kzo9I GATC 2 cut(s) 3, 245
LpnPI CCDG 4 cut(s) 52, 205, 232, 256
LweI GCATC 1 cut(s) 224
MaeI CTAG 1 cut(s) 285
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 2 cut(s) 22, 101
MalI GATC 2 cut(s) 5, 247
MboI GATC 2 cut(s) 3, 245
MboII GAAGA 2 cut(s) 123, 183
MflI RGATCY 1 cut(s) 245
MluCI AATT 3 cut(s) 48, 253, 320
Mly113I GGCGCC 1 cut(s) 42
MnlI CCTC 5 cut(s) 117, 148, 178, 208, 241
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 1 cut(s) 220
MvaI CCWGG 1 cut(s) 220
NarI GGCGCC 1 cut(s) 42
NdeII GATC 2 cut(s) 3, 245
NlaIV GGNNCC 2 cut(s) 43, 282
NmuCI GTSAC 1 cut(s) 22
NspV TTCGAA 1 cut(s) 116
PluTI GGCGCC 1 cut(s) 45
PpuMI RGGWCCY 1 cut(s) 281
Psp5II RGGWCCY 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 218
PspGI CCWGG 1 cut(s) 218
PspN4I GGNNCC 2 cut(s) 43, 282
PspPI GGNCC 1 cut(s) 281
PspPPI RGGWCCY 1 cut(s) 281
PsuI RGATCY 1 cut(s) 245
Sau3AI GATC 2 cut(s) 3, 245
Sau96I GGNCC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 220
SfaNI GCATC 1 cut(s) 224
SfoI GGCGCC 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 116
SinI GGWCC 1 cut(s) 281
Sse9I AATT 3 cut(s) 48, 253, 320
SsiI CCGC 1 cut(s) 213
SspDI GGCGCC 1 cut(s) 41
SspMI CTAG 1 cut(s) 285
StyD4I CCNGG 1 cut(s) 218
StyI CCWWGG 1 cut(s) 284
TaiI ACGT 1 cut(s) 161
TaqI TCGA 4 cut(s) 8, 116, 122, 134
TasI AATT 3 cut(s) 48, 253, 320
TseFI GTSAC 1 cut(s) 22
Tsp45I GTSAC 1 cut(s) 22
VpaK11BI GGWCC 1 cut(s) 281
XapI RAATTY 1 cut(s) 253
XmaJI CCTAGG 1 cut(s) 284
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.