RLG00000006133

fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000614
Physical Location & Seq
Forward (+)
4692327 .. 4693342
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006133

Sequence Viewer

Length: 654 bp
ATGGCGATCGAAACGGCGGCGTATTACCCTTTCAGTGAAGCAAGCAAGGTGCTGAGATCGAAAGGCTGCTCTGTCATGGCTTCGTTTCTTGAAATGCAATTCCATGGGTTTCTCAAGTACCAGACGATGTTGACCGTCTTCGCTCCCGTTGACCAAGTCATGGTGAAGCGGATCGGAAATCTGAGCGAGTACTCGTCGATCTTGCGCCGCCACGTGGTCCCCTGCCGGCTTTCTTGGACCGATTTGAAGAGTCTTGAAGATGGGACTGTGTTGAGGACTAATTTGCAAGGGTTTATGATCAACGTGAGTCGATACGACACCGTTTTTGTGCTCAATGGGGTCTCGGTGATTGTGCCGGAGCTGTATCACAACGGCTGGCTTGTGGTTCACGGAATCAGTGAGGTTCTTGAACTTCCAGTGAGCCTAACTCAGAGCCCAATTCAGAGTCACGCGGAGCCAGTGGTGGATACGGTCGATCCGGTGGCTTCCTCACCTCCCTCTCCGACACTTCATCGCAGCTCCGAGTGGTTATATGCAAACTTTGATGCCTCGGAGGTAGATTCCATGCCAATTTCTTCTGAAGTACTAATGGGTATTGTTGAGGGTTCTTCATACTCTGTCGATGTCATAAAACAAGTAACATGCACCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

218

Amino Acids

24.02

Weight (kDa)

5.16

Isoelectric Point (pI)

55.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 24 - 136 7.4e-10 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 160
AccII CGCG 1 cut(s) 452
AciI CCGC 4 cut(s) 17, 169, 208, 452
AclWI GGATC 2 cut(s) 179, 470
AcuI CTGAAG 1 cut(s) 600
AcvI CACGTG 1 cut(s) 214
AfaI GTAC 3 cut(s) 119, 191, 585
AfiI CCNNNNNNNGG 2 cut(s) 160, 214
AgsI TTSAA 4 cut(s) 92, 247, 257, 410
AluBI AGCT 2 cut(s) 361, 519
AluI AGCT 2 cut(s) 361, 519
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 346
AlwI GGATC 2 cut(s) 179, 470
ApeKI GCWGC 2 cut(s) 66, 516
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AspLEI GCGC 1 cut(s) 207
AspS9I GGNCC 2 cut(s) 217, 237
AsuHPI GGTGA 3 cut(s) 175, 358, 483
AvaII GGWCC 2 cut(s) 217, 237
BanII GRGCYC 1 cut(s) 437
BbrPI CACGTG 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 2 cut(s) 53, 528
BccI CCATC 1 cut(s) 254
BceAI ACGGC 2 cut(s) 30, 388
BciVI GTATCC 1 cut(s) 460
BclI TGATCA 1 cut(s) 297
BcoDI GTCTC 1 cut(s) 346
BfuI GTATCC 1 cut(s) 460
BisI GCNGC 4 cut(s) 18, 67, 208, 517
BlsI GCNGC 4 cut(s) 19, 68, 209, 518
BmcAI AGTACT 2 cut(s) 191, 585
Bme18I GGWCC 2 cut(s) 217, 237
BmgT120I GGNCC 2 cut(s) 217, 237
BmiI GGNNCC 2 cut(s) 219, 456
BmsI GCATC 1 cut(s) 535
BpiI GAAGAC 1 cut(s) 130
BplI GAGNNNNNCTC 2 cut(s) 412, 444
BpuEI CTTGAG 1 cut(s) 98
BsaAI YACGTR 1 cut(s) 214
BsaI GGTCTC 1 cut(s) 346
BsaJI CCNNGG 2 cut(s) 103, 549
BsaWI WCCGGW 1 cut(s) 478
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 214
Bse118I RCCGGY 1 cut(s) 225
Bse1I ACTGG 2 cut(s) 416, 458
BseDI CCNNGG 2 cut(s) 103, 549
BseLI CCNNNNNNNGG 2 cut(s) 160, 214
BseMII CTCAG 3 cut(s) 44, 173, 443
BseNI ACTGG 2 cut(s) 416, 458
BseXI GCAGC 2 cut(s) 53, 528
Bsh1236I CGCG 1 cut(s) 452
Bsh1285I CGRYCG 2 cut(s) 9, 474
BsiEI CGRYCG 2 cut(s) 9, 474
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 3 cut(s) 226, 356, 479
BslFI GGGAC 2 cut(s) 203, 277
BslI CCNNNNNNNGG 2 cut(s) 160, 214
BsmAI GTCTC 1 cut(s) 346
BsmFI GGGAC 2 cut(s) 203, 277
Bso31I GGTCTC 1 cut(s) 346
Bsp1286I GDGCHC 2 cut(s) 333, 437
Bsp143I GATC 6 cut(s) 6, 56, 171, 198, 297, 475
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 4 cut(s) 17, 169, 208, 452
BspCNI CTCAG 3 cut(s) 45, 174, 442
BspFNI CGCG 1 cut(s) 452
BspLI GGNNCC 2 cut(s) 219, 456
BspPI GGATC 2 cut(s) 179, 470
BspTNI GGTCTC 1 cut(s) 346
BsrFI RCCGGY 1 cut(s) 225
BsrI ACTGG 2 cut(s) 416, 458
BssAI RCCGGY 1 cut(s) 225
BssECI CCNNGG 2 cut(s) 103, 549
BssMI GATC 6 cut(s) 6, 56, 171, 198, 297, 475
BssT1I CCWWGG 1 cut(s) 103
Bst4CI ACNGT 5 cut(s) 136, 268, 322, 472, 649
Bst6I CTCTTC 1 cut(s) 242
BstBAI YACGTR 1 cut(s) 214
BstC8I GCNNGC 3 cut(s) 43, 227, 377
BstDEI CTNAG 3 cut(s) 53, 182, 429
BstDSI CCRYGG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 452
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 6 cut(s) 9, 59, 174, 201, 300, 478
BstMAI GTCTC 1 cut(s) 346
BstMBI GATC 6 cut(s) 6, 56, 171, 198, 297, 475
BstMCI CGRYCG 2 cut(s) 9, 474
BstNSI RCATGY 1 cut(s) 645
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 2 cut(s) 53, 528
BstV2I GAAGAC 1 cut(s) 130
BsuI GTATCC 1 cut(s) 460
BtgI CCRYGG 1 cut(s) 103
BtgZI GCGATG 1 cut(s) 497
BtsIMutI CAGTG 4 cut(s) 40, 403, 423, 465
Cac8I GCNNGC 3 cut(s) 43, 227, 377
CfoI GCGC 1 cut(s) 207
Cfr10I RCCGGY 1 cut(s) 225
Cfr13I GGNCC 2 cut(s) 217, 237
Csp6I GTAC 3 cut(s) 118, 190, 584
CviAII CATG 5 cut(s) 76, 104, 160, 565, 642
CviQI GTAC 3 cut(s) 118, 190, 584
DdeI CTNAG 3 cut(s) 53, 182, 429
DpnI GATC 6 cut(s) 8, 58, 173, 200, 299, 477
DpnII GATC 6 cut(s) 6, 56, 171, 198, 297, 475
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 437
Eco31I GGTCTC 1 cut(s) 346
Eco47I GGWCC 2 cut(s) 217, 237
Eco57I CTGAAG 1 cut(s) 600
Eco72I CACGTG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 437
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 5 cut(s) 79, 107, 163, 568, 645
FaqI GGGAC 2 cut(s) 203, 277
FatI CATG 5 cut(s) 75, 103, 159, 564, 641
FbaI TGATCA 1 cut(s) 297
Fnu4HI GCNGC 4 cut(s) 18, 67, 208, 517
FriOI GRGCYC 1 cut(s) 437
Fsp4HI GCNGC 4 cut(s) 18, 67, 208, 517
GlaI GCGC 1 cut(s) 206
GluI GCNGC 4 cut(s) 18, 67, 208, 517
HapII CCGG 3 cut(s) 226, 356, 479
HhaI GCGC 1 cut(s) 207
Hin1II CATG 5 cut(s) 79, 107, 163, 568, 645
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HincII GTYRAC 2 cut(s) 132, 151
HindII GTYRAC 2 cut(s) 132, 151
HinfI GANTC 5 cut(s) 250, 307, 393, 445, 560
HpaII CCGG 3 cut(s) 226, 356, 479
HphI GGTGA 3 cut(s) 175, 358, 483
Hpy166II GTNNAC 3 cut(s) 132, 151, 388
Hpy188I TCNGA 8 cut(s) 176, 183, 432, 444, 504, 523, 553, 580
Hpy188III TCNNGA 3 cut(s) 89, 254, 407
Hpy8I GTNNAC 3 cut(s) 132, 151, 388
Hpy99I CGWCG 1 cut(s) 199
HpyCH4III ACNGT 5 cut(s) 136, 268, 322, 472, 649
HpyCH4IV ACGT 2 cut(s) 213, 303
HpyCH4V TGCA 4 cut(s) 97, 286, 536, 645
HpyF3I CTNAG 3 cut(s) 53, 182, 429
HpySE526I ACGT 2 cut(s) 213, 303
Hsp92II CATG 5 cut(s) 79, 107, 163, 568, 645
HspAI GCGC 1 cut(s) 205
KroI GCCGGC 1 cut(s) 225
KroNI GCCGGC 1 cut(s) 227
Ksp22I TGATCA 1 cut(s) 297
Kzo9I GATC 6 cut(s) 6, 56, 171, 198, 297, 475
LmnI GCTCC 4 cut(s) 148, 358, 454, 524
LpnPI CCDG 8 cut(s) 134, 235, 239, 361, 369, 429, 471, 492
Lsp1109I GCAGC 2 cut(s) 53, 528
LweI GCATC 1 cut(s) 535
MaeII ACGT 2 cut(s) 213, 303
MaeIII GTNAC 2 cut(s) 446, 637
MalI GATC 6 cut(s) 8, 58, 173, 200, 299, 477
MboI GATC 6 cut(s) 6, 56, 171, 198, 297, 475
MboII GAAGA 5 cut(s) 130, 259, 269, 567, 600
MhlI GDGCHC 2 cut(s) 333, 437
MluCI AATT 4 cut(s) 98, 280, 438, 570
MlyI GAGTC 3 cut(s) 259, 316, 454
MmeI TCCRAC 1 cut(s) 527
MnlI CCTC 8 cut(s) 267, 394, 499, 504, 508, 547, 559, 595
MroNI GCCGGC 1 cut(s) 225
MspI CCGG 3 cut(s) 226, 356, 479
MvnI CGCG 1 cut(s) 452
NaeI GCCGGC 1 cut(s) 227
NcoI CCATGG 1 cut(s) 103
NdeII GATC 6 cut(s) 6, 56, 171, 198, 297, 475
NgoMIV GCCGGC 1 cut(s) 225
NlaIII CATG 5 cut(s) 79, 107, 163, 568, 645
NlaIV GGNNCC 2 cut(s) 219, 456
NmuCI GTSAC 1 cut(s) 446
NspI RCATGY 1 cut(s) 645
PdiI GCCGGC 1 cut(s) 227
PfeI GAWTC 2 cut(s) 393, 560
PflFI GACNNNGTC 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 160
PkrI GCNGC 4 cut(s) 19, 68, 209, 518
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 3 cut(s) 258, 315, 453
PmaCI CACGTG 1 cut(s) 214
PmlI CACGTG 1 cut(s) 214
PpsI GAGTC 3 cut(s) 258, 315, 453
Ppu21I YACGTR 1 cut(s) 214
PspCI CACGTG 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 219, 456
PspPI GGNCC 2 cut(s) 217, 237
PsyI GACNNNGTC 1 cut(s) 155
PvuI CGATCG 1 cut(s) 9
RsaI GTAC 3 cut(s) 119, 191, 585
RsaNI GTAC 3 cut(s) 118, 190, 584
SatI GCNGC 4 cut(s) 18, 67, 208, 517
Sau3AI GATC 6 cut(s) 6, 56, 171, 198, 297, 475
Sau96I GGNCC 2 cut(s) 217, 237
ScaI AGTACT 2 cut(s) 191, 585
SchI GAGTC 3 cut(s) 259, 316, 454
SduI GDGCHC 2 cut(s) 333, 437
SetI ASST 8 cut(s) 51, 216, 306, 363, 405, 496, 521, 558
SfaNI GCATC 1 cut(s) 535
SinI GGWCC 2 cut(s) 217, 237
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 4 cut(s) 98, 280, 438, 570
SsiI CCGC 4 cut(s) 17, 169, 208, 452
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 5 cut(s) 136, 268, 322, 472, 649
TaiI ACGT 2 cut(s) 216, 306
TaqI TCGA 6 cut(s) 9, 59, 197, 310, 474, 621
TaqII GACCGA 1 cut(s) 254
TasI AATT 4 cut(s) 98, 280, 438, 570
TatI WGTACW 2 cut(s) 189, 583
TauI GCSGC 2 cut(s) 20, 210
TfiI GAWTC 2 cut(s) 393, 560
TscAI CASTG 4 cut(s) 40, 403, 423, 465
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 2 cut(s) 66, 516
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 2 cut(s) 500, 600
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 4 cut(s) 40, 403, 423, 465
Tth111I GACNNNGTC 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 160
VpaK11BI GGWCC 2 cut(s) 217, 237
XceI RCATGY 1 cut(s) 645
ZrmI AGTACT 2 cut(s) 191, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.