pycom111g00880

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0000614
Physical Location & Seq
Forward (+)
584607 .. 585695
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g00880.1

Sequence Viewer

Length: 1089 bp
ATGGCGACCTCCGCCGCTACTCTCTTGATCTTCCTCACCATCCTTTCCCTCTCCGTTTCCTCCGCCCTCGCAACCTCCGTGACCCTCTTGAACGCCGCCAAGGTTCTCTCGAACTCCGGCTTCCTCTCCATGTCCCTTACCCTCCAACTCGTCTCCAACTCCATCGAATTCGAATCCCCCGCTGCCACCATCTTCGCTCCGCCGGACGCCGCCTTCATGCGCCTGGGCCAGCCCTCACTCCCCCTCCTCCTCTACCACATCTCCCCGAGAAGAATCTCCGTCAACACCCTCAAGTACCTCCGCCCCAATACAAAGATCCCGACTTTGCTTACCAATTACTCCCTCACCGTCACCGCCTCCCCAAATTTCCAGGGCTATTTGTCGATCAACGATCTGGGTATTAATCCTAACGCCGTTCTGGATGATGGGTCGGTGATCGTTTATGCAATCGACGAGTTTTTCAATTCGTCTTTCTTGGCCGCCGACGCCCCTCAAGAACGGGCGGCAGATCCTCCATTGATGAGCTCTGTTTCCGGTGTTCAACCGCCGAGCCCTGCTCCGAGTGCGACTGTGATGGAGGCTGAACCTCGCCGGCCCGGTCCCGAATCTTTCGGTTTCGTAGCTGATTTGCTGAGGTCCAAAGGGTACTCAATCTTTGCCGCATTTCTTGATGCGCAGCTGGTGGGGTTCAATCGGAAGACCCGGCTCACAGTTTTCGCTCCGATCGACGAGGCGATTGATGATTACCAGAGGAACAGCACCGACTACTCGCTGATATTTCGGCAGCATGCTCTTCCGAGATTGCTTATGTGGCAAGATTTGGTGGCGCTTGAAGATGGAACAATGCTGCCCACTTTTGAAGAAGGGTTTATGATCAATGTGGTCAAGTTTGGAGATGTTCCCGCGCTGAATGAAGTGCCGGTGGTGGGTCAAGATTTGTTTCTGAATCGGTGGCTGGCTGTGCACGGCCTGAACCGGCTGCTGACAGCACCTGCCGCGAAGCAAGAACCGGTTGAAGATGTTTTCACTGATGGGTATGTTGCCAATGTTGCTCAGGGTATGCCTCATGATTATGGTGACTACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

363

Amino Acids

39.36

Weight (kDa)

4.75

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1000
Acc16I TGCGCA 1 cut(s) 675
Acc36I ACCTGC 1 cut(s) 1000
AccII CGCG 2 cut(s) 905, 998
AclWI GGATC 2 cut(s) 310, 503
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 2 cut(s) 167, 364
AcyI GRCGYC 2 cut(s) 207, 486
AfaI GTAC 2 cut(s) 296, 647
AfiI CCNNNNNNNGG 1 cut(s) 926
AgeI ACCGGT 1 cut(s) 1009
AgsI TTSAA 7 cut(s) 91, 463, 542, 691, 833, 860, 1016
AjnI CCWGG 2 cut(s) 222, 369
AluBI AGCT 3 cut(s) 525, 623, 679
AluI AGCT 3 cut(s) 525, 623, 679
Alw21I GWGCWC 2 cut(s) 527, 966
Alw26I GTCTC 1 cut(s) 157
Alw44I GTGCAC 1 cut(s) 962
AlwI GGATC 2 cut(s) 310, 503
AlwNI CAGNNNCTG 1 cut(s) 992
Ama87I CYCGRG 1 cut(s) 265
AoxI GGCC 4 cut(s) 226, 477, 593, 967
ApaLI GTGCAC 1 cut(s) 962
ApeKI GCWGC 5 cut(s) 182, 676, 784, 847, 979
ApoI RAATTY 2 cut(s) 167, 364
AseI ATTAAT 1 cut(s) 402
AsiGI ACCGGT 1 cut(s) 1009
AspLEI GCGC 4 cut(s) 222, 676, 829, 907
AspS9I GGNCC 4 cut(s) 226, 594, 599, 636
AsuC2I CCSGG 2 cut(s) 597, 703
AsuHPI GGTGA 5 cut(s) 28, 337, 343, 445, 1088
AsuII TTCGAA 1 cut(s) 171
AvaI CYCGRG 1 cut(s) 265
AvaII GGWCC 2 cut(s) 599, 636
BaeGI GKGCMC 1 cut(s) 966
BanII GRGCYC 2 cut(s) 527, 554
BbsI GAAGAC 1 cut(s) 704
Bbv12I GWGCWC 2 cut(s) 527, 966
BbvCI CCTCAGC 1 cut(s) 632
BbvI GCAGC 5 cut(s) 169, 688, 796, 834, 966
BccI CCATC 7 cut(s) 47, 170, 197, 419, 568, 830, 1025
BceAI ACGGC 2 cut(s) 398, 982
BciT130I CCWGG 2 cut(s) 224, 371
BclI TGATCA 1 cut(s) 873
BcnI CCSGG 2 cut(s) 597, 703
BcoDI GTCTC 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 830
BfuAI ACCTGC 1 cut(s) 1000
Bme1390I CCNGG 4 cut(s) 224, 371, 597, 703
Bme18I GGWCC 2 cut(s) 599, 636
BmeT110I CYCGRG 1 cut(s) 265
BmgT120I GGNCC 4 cut(s) 226, 594, 599, 636
BmiI GGNNCC 1 cut(s) 601
BmrFI CCNGG 4 cut(s) 224, 371, 597, 703
BmsI GCATC 1 cut(s) 661
BpiI GAAGAC 1 cut(s) 704
BplI GAGNNNNNCTC 2 cut(s) 541, 573
Bpu10I CCTNAGC 2 cut(s) 632, 1053
Bpu14I TTCGAA 1 cut(s) 171
BpuEI CTTGAG 2 cut(s) 275, 477
BpuMI CCSGG 2 cut(s) 597, 703
BsaHI GRCGYC 2 cut(s) 207, 486
BsaJI CCNNGG 3 cut(s) 99, 223, 370
BsaWI WCCGGW 2 cut(s) 533, 1009
BsaXI ACNNNNNCTCC 4 cut(s) 228, 245, 258, 275
Bsc4I CCNNNNNNNGG 1 cut(s) 926
Bse118I RCCGGY 4 cut(s) 591, 919, 975, 1009
BseBI CCWGG 2 cut(s) 224, 371
BseDI CCNNGG 3 cut(s) 99, 223, 370
BseGI GGATG 2 cut(s) 39, 427
BseLI CCNNNNNNNGG 1 cut(s) 926
BseMII CTCAG 2 cut(s) 623, 1067
BseRI GAGGAG 2 cut(s) 236, 239
BseSI GKGCMC 1 cut(s) 966
BseXI GCAGC 5 cut(s) 169, 688, 796, 834, 966
Bsh1236I CGCG 2 cut(s) 905, 998
Bsh1285I CGRYCG 1 cut(s) 726
BshFI GGCC 4 cut(s) 228, 479, 595, 969
BshTI ACCGGT 1 cut(s) 1009
BsiEI CGRYCG 1 cut(s) 726
BsiHKAI GWGCWC 2 cut(s) 527, 966
BsiHKCI CYCGRG 1 cut(s) 265
BsiSI CCGG 9 cut(s) 117, 203, 534, 592, 597, 703, 920, 976, 1010
BslFI GGGAC 2 cut(s) 118, 585
BslI CCNNNNNNNGG 1 cut(s) 926
BsmAI GTCTC 1 cut(s) 157
BsmBI CGTCTC 1 cut(s) 157
BsmFI GGGAC 2 cut(s) 118, 585
BsnI GGCC 4 cut(s) 228, 479, 595, 969
BsoBI CYCGRG 1 cut(s) 265
Bsp119I TTCGAA 1 cut(s) 171
Bsp1286I GDGCHC 3 cut(s) 527, 554, 966
Bsp143I GATC 8 cut(s) 27, 315, 384, 391, 435, 508, 723, 873
BspANI GGCC 4 cut(s) 228, 479, 595, 969
BspCNI CTCAG 2 cut(s) 624, 1066
BspFNI CGCG 2 cut(s) 905, 998
BspHI TCATGA 1 cut(s) 1066
BspLI GGNNCC 1 cut(s) 601
BspMI ACCTGC 1 cut(s) 1000
BspPI GGATC 2 cut(s) 310, 503
BspQI GCTCTTC 1 cut(s) 798
BspT104I TTCGAA 1 cut(s) 171
BsrFI RCCGGY 4 cut(s) 591, 919, 975, 1009
BssAI RCCGGY 4 cut(s) 591, 919, 975, 1009
BssECI CCNNGG 3 cut(s) 99, 223, 370
BssMI GATC 8 cut(s) 27, 315, 384, 391, 435, 508, 723, 873
BssNI GRCGYC 2 cut(s) 207, 486
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 2 cut(s) 224, 371
Bst4CI ACNGT 3 cut(s) 349, 571, 712
Bst6I CTCTTC 1 cut(s) 798
BstACI GRCGYC 2 cut(s) 207, 486
BstBI TTCGAA 1 cut(s) 171
BstC8I GCNNGC 4 cut(s) 230, 593, 789, 957
BstDEI CTNAG 2 cut(s) 632, 1053
BstF5I GGATG 2 cut(s) 39, 427
BstFNI CGCG 2 cut(s) 905, 998
BstH2I RGCGCY 1 cut(s) 830
BstHHI GCGC 4 cut(s) 222, 676, 829, 907
BstKTI GATC 8 cut(s) 30, 318, 387, 394, 438, 511, 726, 876
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 8 cut(s) 27, 315, 384, 391, 435, 508, 723, 873
BstMCI CGRYCG 1 cut(s) 726
BstMWI GCNNNNNNNGC 7 cut(s) 11, 485, 563, 811, 961, 995, 1049
BstNI CCWGG 2 cut(s) 224, 371
BstNSI RCATGY 1 cut(s) 791
BstSCI CCNGG 4 cut(s) 222, 369, 595, 701
BstSLI GKGCMC 1 cut(s) 966
BstUI CGCG 2 cut(s) 905, 998
BstV1I GCAGC 5 cut(s) 169, 688, 796, 834, 966
BstV2I GAAGAC 1 cut(s) 704
BstX2I RGATCY 2 cut(s) 315, 508
BstYI RGATCY 2 cut(s) 315, 508
BsuRI GGCC 4 cut(s) 228, 479, 595, 969
BtsCI GGATG 2 cut(s) 39, 427
BtsIMutI CAGTG 2 cut(s) 1026, 1084
BveI ACCTGC 1 cut(s) 1000
Cac8I GCNNGC 4 cut(s) 230, 593, 789, 957
CaiI CAGNNNCTG 1 cut(s) 992
CciI TCATGA 1 cut(s) 1066
CfoI GCGC 4 cut(s) 222, 676, 829, 907
Cfr10I RCCGGY 4 cut(s) 591, 919, 975, 1009
Cfr13I GGNCC 4 cut(s) 226, 594, 599, 636
CseI GACGC 2 cut(s) 215, 494
Csp6I GTAC 2 cut(s) 295, 646
CspAI ACCGGT 1 cut(s) 1009
CviAII CATG 4 cut(s) 130, 217, 788, 1067
CviQI GTAC 2 cut(s) 295, 646
DdeI CTNAG 2 cut(s) 632, 1053
DpnI GATC 8 cut(s) 29, 317, 386, 393, 437, 510, 725, 875
DpnII GATC 8 cut(s) 27, 315, 384, 391, 435, 508, 723, 873
EaeI YGGCCR 1 cut(s) 477
Eam1104I CTCTTC 1 cut(s) 798
EarI CTCTTC 1 cut(s) 798
EciI GGCGGA 3 cut(s) 52, 189, 290
Ecl136II GAGCTC 1 cut(s) 525
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 2 cut(s) 527, 554
Eco47I GGWCC 2 cut(s) 599, 636
Eco53kI GAGCTC 1 cut(s) 525
Eco88I CYCGRG 1 cut(s) 265
EcoICRI GAGCTC 1 cut(s) 525
EcoRI GAATTC 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 222, 369
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 2 cut(s) 527, 554
ErhI CCWWGG 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 157
FaeI CATG 4 cut(s) 133, 220, 791, 1070
FaqI GGGAC 2 cut(s) 118, 585
FatI CATG 4 cut(s) 129, 216, 787, 1066
FauI CCCGC 2 cut(s) 187, 910
FbaI TGATCA 1 cut(s) 873
FokI GGATG 2 cut(s) 26, 434
FriOI GRGCYC 2 cut(s) 527, 554
FspI TGCGCA 1 cut(s) 675
GlaI GCGC 4 cut(s) 221, 675, 828, 906
HaeII RGCGCY 1 cut(s) 830
HaeIII GGCC 4 cut(s) 228, 479, 595, 969
HapII CCGG 9 cut(s) 117, 203, 534, 592, 597, 703, 920, 976, 1010
HgaI GACGC 2 cut(s) 215, 494
HhaI GCGC 4 cut(s) 222, 676, 829, 907
Hin1I GRCGYC 2 cut(s) 207, 486
Hin1II CATG 4 cut(s) 133, 220, 791, 1070
Hin6I GCGC 4 cut(s) 220, 674, 827, 905
HinP1I GCGC 4 cut(s) 220, 674, 827, 905
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 4 cut(s) 173, 273, 605, 946
HpaII CCGG 9 cut(s) 117, 203, 534, 592, 597, 703, 920, 976, 1010
HphI GGTGA 5 cut(s) 28, 337, 343, 445, 1088
Hpy166II GTNNAC 2 cut(s) 283, 964
Hpy188I TCNGA 5 cut(s) 561, 696, 723, 798, 945
Hpy8I GTNNAC 2 cut(s) 283, 964
Hpy99I CGWCG 3 cut(s) 455, 488, 731
HpyAV CCTTC 2 cut(s) 223, 857
HpyCH4III ACNGT 3 cut(s) 349, 571, 712
HpyCH4V TGCA 2 cut(s) 446, 964
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 485, 563, 811, 961, 995, 1049
HpyF3I CTNAG 2 cut(s) 632, 1053
Hsp92I GRCGYC 2 cut(s) 207, 486
Hsp92II CATG 4 cut(s) 133, 220, 791, 1070
HspAI GCGC 4 cut(s) 220, 674, 827, 905
KroI GCCGGC 1 cut(s) 591
KroNI GCCGGC 1 cut(s) 593
Ksp22I TGATCA 1 cut(s) 873
Kzo9I GATC 8 cut(s) 27, 315, 384, 391, 435, 508, 723, 873
LguI GCTCTTC 1 cut(s) 798
LmnI GCTCC 3 cut(s) 202, 562, 724
Lsp1109I GCAGC 5 cut(s) 169, 688, 796, 834, 966
LweI GCATC 1 cut(s) 661
MaeIII GTNAC 3 cut(s) 79, 349, 1076
MalI GATC 8 cut(s) 29, 317, 386, 393, 437, 510, 725, 875
MboI GATC 8 cut(s) 27, 315, 384, 391, 435, 508, 723, 873
MboII GAAGA 8 cut(s) 22, 184, 282, 709, 785, 845, 872, 1028
MflI RGATCY 2 cut(s) 315, 508
MhlI GDGCHC 3 cut(s) 527, 554, 966
MluCI AATT 4 cut(s) 167, 334, 364, 463
MmeI TCCRAC 2 cut(s) 169, 180
MroNI GCCGGC 1 cut(s) 591
MseI TTAA 1 cut(s) 402
MslI CAYNNNNRTG 1 cut(s) 1071
MspA1I CMGCKG 2 cut(s) 182, 679
MspI CCGG 9 cut(s) 117, 203, 534, 592, 597, 703, 920, 976, 1010
MspR9I CCNGG 4 cut(s) 224, 371, 597, 703
MvaI CCWGG 2 cut(s) 224, 371
MvnI CGCG 2 cut(s) 905, 998
MwoI GCNNNNNNNGC 7 cut(s) 11, 485, 563, 811, 961, 995, 1049
NaeI GCCGGC 1 cut(s) 593
NciI CCSGG 2 cut(s) 597, 703
NdeII GATC 8 cut(s) 27, 315, 384, 391, 435, 508, 723, 873
NgoMIV GCCGGC 1 cut(s) 591
NlaIII CATG 4 cut(s) 133, 220, 791, 1070
NlaIV GGNNCC 1 cut(s) 601
NmeAIII GCCGAG 1 cut(s) 573
NmuCI GTSAC 3 cut(s) 79, 349, 1076
NsbI TGCGCA 1 cut(s) 675
NspI RCATGY 1 cut(s) 791
NspV TTCGAA 1 cut(s) 171
PaeI GCATGC 1 cut(s) 791
PagI TCATGA 1 cut(s) 1066
PaqCI CACCTGC 1 cut(s) 1000
PciSI GCTCTTC 1 cut(s) 798
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 723
PdiI GCCGGC 1 cut(s) 593
PfeI GAWTC 4 cut(s) 173, 273, 605, 946
PinAI ACCGGT 1 cut(s) 1009
Ple19I CGATCG 1 cut(s) 726
PshBI ATTAAT 1 cut(s) 402
Psp124BI GAGCTC 1 cut(s) 527
Psp6I CCWGG 2 cut(s) 222, 369
PspGI CCWGG 2 cut(s) 222, 369
PspN4I GGNNCC 1 cut(s) 601
PspPI GGNCC 4 cut(s) 226, 594, 599, 636
PstNI CAGNNNCTG 1 cut(s) 992
PsuI RGATCY 2 cut(s) 315, 508
PvuI CGATCG 1 cut(s) 726
PvuII CAGCTG 1 cut(s) 679
RsaI GTAC 2 cut(s) 296, 647
RsaNI GTAC 2 cut(s) 295, 646
RseI CAYNNNNRTG 1 cut(s) 1071
SacI GAGCTC 1 cut(s) 527
SapI GCTCTTC 1 cut(s) 798
SaqAI TTAA 1 cut(s) 402
Sau3AI GATC 8 cut(s) 27, 315, 384, 391, 435, 508, 723, 873
Sau96I GGNCC 4 cut(s) 226, 594, 599, 636
ScrFI CCNGG 4 cut(s) 224, 371, 597, 703
SduI GDGCHC 3 cut(s) 527, 554, 966
SfaNI GCATC 1 cut(s) 661
SfuI TTCGAA 1 cut(s) 171
SinI GGWCC 2 cut(s) 599, 636
SmiMI CAYNNNNRTG 1 cut(s) 1071
SmlI CTYRAG 2 cut(s) 290, 492
SmoI CTYRAG 2 cut(s) 290, 492
SphI GCATGC 1 cut(s) 791
Sse9I AATT 4 cut(s) 167, 334, 364, 463
SstI GAGCTC 1 cut(s) 527
StyD4I CCNGG 4 cut(s) 222, 369, 595, 701
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 3 cut(s) 349, 571, 712
TaqI TCGA 6 cut(s) 110, 165, 171, 383, 450, 726
TasI AATT 4 cut(s) 167, 334, 364, 463
TauI GCSGC 7 cut(s) 17, 98, 212, 482, 506, 662, 998
TfiI GAWTC 4 cut(s) 173, 273, 605, 946
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 1 cut(s) 1033
TseFI GTSAC 3 cut(s) 79, 349, 1076
TseI GCWGC 5 cut(s) 182, 676, 784, 847, 979
Tsp45I GTSAC 3 cut(s) 79, 349, 1076
TspDTI ATGAA 2 cut(s) 205, 927
TspGWI ACGGA 3 cut(s) 43, 67, 268
TspRI CASTG 1 cut(s) 1033
VneI GTGCAC 1 cut(s) 962
VpaK11BI GGWCC 2 cut(s) 599, 636
VspI ATTAAT 1 cut(s) 402
XapI RAATTY 2 cut(s) 167, 364
XceI RCATGY 1 cut(s) 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.