RLG00000008208

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000614
Physical Location & Seq
Reverse (-)
27083850 .. 27084737
888 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008208

Sequence Viewer

Length: 480 bp
ATGGCTCTCACTCTCGAGGTCATCTCTCAGTCGCTCGTCCCCAAGTCGTCGTCGCTCACCATCTTCGCGTCGTCTGACTCCACCTTCAAGCGAGCCAACCAGCCTTCCCTCTCTCTCTCTCTCTCTCGATCTCCTCCAATTCCACTTCGACTCTCTCGCCTTCCCCCTCCAAACCCTAAAACACTCCCTGCCGGCACCAAGAACCTGAAGTTGCACTCCGGCAGCTCCCTCGTCGTCACCTCACTGCCGTTAAAAACTATTAGTGGACTTCCAACAAGATTGAAATTTGAGGAGGTGTGTCGTCGAGAGGCGTTTTGCCAGCCATGGCCATGGATTTTGATCTCAATCAGGTATGCAGAGAGTGATGGTCGTCGGCGCTCGTGGTCAAACTGTGATATGATCAAAGTCATCCTTTCTCCAACTCCCAATGGTAGTTGTTTTGTCAAGATTATGGCAAGAGTTTCCGCTGAGGATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

160

Amino Acids

17.54

Weight (kDa)

10.04

Isoelectric Point (pI)

66.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AccII CGCG 1 cut(s) 68
AciI CCGC 1 cut(s) 465
AcoI YGGCCR 1 cut(s) 326
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 227
AgsI TTSAA 2 cut(s) 88, 283
AluBI AGCT 1 cut(s) 225
AluI AGCT 1 cut(s) 225
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 1 cut(s) 326
ApeKI GCWGC 1 cut(s) 222
ApoI RAATTY 1 cut(s) 284
AspLEI GCGC 1 cut(s) 378
AsuHPI GGTGA 2 cut(s) 49, 229
AvaI CYCGRG 1 cut(s) 14
BalI TGGCCA 1 cut(s) 328
BanI GGYRCC 1 cut(s) 194
BauI CACGAG 1 cut(s) 379
BbvCI CCTCAGC 1 cut(s) 468
BbvI GCAGC 1 cut(s) 234
BccI CCATC 2 cut(s) 68, 359
BceAI ACGGC 1 cut(s) 232
BcgI CGANNNNNNTGC 2 cut(s) 211, 245
BclI TGATCA 1 cut(s) 399
BfoI RGCGCY 1 cut(s) 379
BisI GCNGC 1 cut(s) 223
BlsI GCNGC 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 196
BplI GAGNNNNNCTC 2 cut(s) 8, 40
Bpu10I CCTNAGC 1 cut(s) 468
BsaBI GATNNNNATC 2 cut(s) 338, 344
BsaJI CCNNGG 2 cut(s) 323, 329
Bse118I RCCGGY 1 cut(s) 191
Bse8I GATNNNNATC 2 cut(s) 338, 344
BseDI CCNNGG 2 cut(s) 323, 329
BseGI GGATG 2 cut(s) 408, 478
BseJI GATNNNNATC 2 cut(s) 338, 344
BseMII CTCAG 2 cut(s) 41, 459
BseRI GAGGAG 2 cut(s) 123, 305
BseXI GCAGC 1 cut(s) 234
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 1 cut(s) 328
BshNI GGYRCC 1 cut(s) 194
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 2 cut(s) 192, 219
BslFI GGGAC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 1 cut(s) 328
BsoBI CYCGRG 1 cut(s) 14
Bsp143I GATC 3 cut(s) 128, 339, 399
Bsp19I CCATGG 2 cut(s) 323, 329
BspACI CCGC 1 cut(s) 465
BspANI GGCC 1 cut(s) 328
BspCNI CTCAG 2 cut(s) 40, 460
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 196
BspT107I GGYRCC 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 191
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 2 cut(s) 323, 329
BssMI GATC 3 cut(s) 128, 339, 399
BssSI CACGAG 1 cut(s) 379
BssT1I CCWWGG 2 cut(s) 323, 329
Bst2BI CACGAG 1 cut(s) 379
Bst4CI ACNGT 1 cut(s) 392
BstC8I GCNNGC 3 cut(s) 93, 193, 320
BstDEI CTNAG 2 cut(s) 27, 468
BstDSI CCRYGG 2 cut(s) 323, 329
BstF5I GGATG 2 cut(s) 408, 478
BstFNI CGCG 1 cut(s) 68
BstH2I RGCGCY 1 cut(s) 379
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 3 cut(s) 131, 342, 402
BstMBI GATC 3 cut(s) 128, 339, 399
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 234
BstXI CCANNNNNNTGG 1 cut(s) 330
BsuRI GGCC 1 cut(s) 328
BtgI CCRYGG 2 cut(s) 323, 329
BtsCI GGATG 2 cut(s) 408, 478
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 242
Cac8I GCNNGC 3 cut(s) 93, 193, 320
CfoI GCGC 1 cut(s) 378
Cfr10I RCCGGY 1 cut(s) 191
CseI GACGC 1 cut(s) 57
CviAII CATG 2 cut(s) 324, 330
CviJI RGCY 6 cut(s) 5, 95, 103, 225, 322, 328
CviKI_1 RGCY 6 cut(s) 5, 95, 103, 225, 322, 328
DdeI CTNAG 2 cut(s) 27, 468
DpnI GATC 3 cut(s) 130, 341, 401
DpnII GATC 3 cut(s) 128, 339, 399
EaeI YGGCCR 1 cut(s) 326
Eco130I CCWWGG 2 cut(s) 323, 329
Eco57I CTGAAG 1 cut(s) 227
Eco88I CYCGRG 1 cut(s) 14
EcoT14I CCWWGG 2 cut(s) 323, 329
ErhI CCWWGG 2 cut(s) 323, 329
FaeI CATG 2 cut(s) 327, 333
FaiI YATR 5 cut(s) 325, 331, 354, 398, 452
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FaqI GGGAC 1 cut(s) 23
FatI CATG 2 cut(s) 323, 329
FbaI TGATCA 1 cut(s) 399
Fnu4HI GCNGC 1 cut(s) 223
FokI GGATG 1 cut(s) 395
Fsp4HI GCNGC 1 cut(s) 223
GlaI GCGC 1 cut(s) 377
GluI GCNGC 1 cut(s) 223
HaeII RGCGCY 1 cut(s) 379
HaeIII GGCC 1 cut(s) 328
HapII CCGG 2 cut(s) 192, 219
HgaI GACGC 1 cut(s) 57
HhaI GCGC 1 cut(s) 378
Hin1II CATG 2 cut(s) 327, 333
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HinfI GANTC 2 cut(s) 77, 150
HpaII CCGG 2 cut(s) 192, 219
HphI GGTGA 2 cut(s) 49, 229
Hpy166II GTNNAC 1 cut(s) 266
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 4 cut(s) 14, 126, 305, 445
Hpy8I GTNNAC 1 cut(s) 266
Hpy99I CGWCG 6 cut(s) 52, 55, 73, 236, 306, 375
HpyAV CCTTC 3 cut(s) 94, 114, 170
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4V TGCA 2 cut(s) 214, 356
HpyF3I CTNAG 2 cut(s) 27, 468
Hsp92II CATG 2 cut(s) 327, 333
HspAI GCGC 1 cut(s) 376
KroI GCCGGC 1 cut(s) 191
KroNI GCCGGC 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 399
Kzo9I GATC 3 cut(s) 128, 339, 399
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 7 cut(s) 113, 201, 205, 218, 232, 332, 334
Lsp1109I GCAGC 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 235
MalI GATC 3 cut(s) 130, 341, 401
MboI GATC 3 cut(s) 128, 339, 399
MboII GAAGA 1 cut(s) 55
MlsI TGGCCA 1 cut(s) 328
MluCI AATT 2 cut(s) 138, 284
MluNI TGGCCA 1 cut(s) 328
MlyI GAGTC 2 cut(s) 71, 144
MmeI TCCRAC 2 cut(s) 296, 443
Mox20I TGGCCA 1 cut(s) 328
MroNI GCCGGC 1 cut(s) 191
MscI TGGCCA 1 cut(s) 328
MseI TTAA 1 cut(s) 251
MslI CAYNNNNRTG 1 cut(s) 328
Msp20I TGGCCA 1 cut(s) 328
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 2 cut(s) 192, 219
MvnI CGCG 1 cut(s) 68
NaeI GCCGGC 1 cut(s) 193
NcoI CCATGG 2 cut(s) 323, 329
NdeII GATC 3 cut(s) 128, 339, 399
NgoMIV GCCGGC 1 cut(s) 191
NlaIII CATG 2 cut(s) 327, 333
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 235
PaeR7I CTCGAG 1 cut(s) 14
PdiI GCCGGC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 224
PleI GAGTC 2 cut(s) 71, 144
PpsI GAGTC 2 cut(s) 71, 144
PspN4I GGNNCC 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 328
SaqAI TTAA 1 cut(s) 251
SatI GCNGC 1 cut(s) 223
Sau3AI GATC 3 cut(s) 128, 339, 399
SchI GAGTC 2 cut(s) 71, 144
SetI ASST 7 cut(s) 21, 86, 207, 227, 242, 297, 353
Sfr274I CTCGAG 1 cut(s) 14
SlaI CTCGAG 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 2 cut(s) 138, 284
SsiI CCGC 1 cut(s) 465
StyI CCWWGG 2 cut(s) 323, 329
TaaI ACNGT 1 cut(s) 392
TaqI TCGA 4 cut(s) 15, 127, 148, 304
TasI AATT 2 cut(s) 138, 284
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 222
Tsp45I GTSAC 1 cut(s) 235
TspRI CASTG 1 cut(s) 249
XapI RAATTY 1 cut(s) 284
XhoI CTCGAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.