RLG00000006144

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000614
Physical Location & Seq
Reverse (-)
4754930 .. 4755979
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006144

Sequence Viewer

Length: 942 bp
ATGGCGTCGCCGTCGATCACCGCCCTCTCTCTCCTCCTCCCCCTCATCTCCCTCCTCTCTCTCTCCTCCGCTCTCCCCTCCCGCAGCATCCTCAACGCCGCCGAAGTCCTCTCCGATTCCGGCTACCTCTCCATGGCTCTCACTCTCGAGGTCATCTCTCAGTCCCTCGTCCCCAAGTCACCGTCGCTTACCATCTTTGCCCCGCCGGACTCTGCCTTCAAGCGAGCCGGCCAGCCCTCCCTCTCTCTCCTCCAATTCCACTTCGCCCCTCTCGCTCTCCCCCTCCAAACCCTAAAATCGCTCCCCGCCGGCACCAAGATCCCGACTCTCCTCTCCGGCAGCTCCCTCGTCGTCACCTCTCAGCCTTCCGGCACTGGACTTTCTCTCAACGGCGTCAGGGTCACAACCGCCGCCTCGCCGATCTACGACGACGGGTTCCTGATCATTCTCGGAGTCGAGGACTTCTTCGACCCGAACTTCCATGCTCCAGCCCGAATTCCGGTCTCGGATCCCATGTGCGGGTCTCGTTCGTCGAACGGTACAAGCACGATCGGGTTTCCGGCGGCTTCTTGGTTTGAAGGAGCCAAAGGCGTGATGAGGTCCAATGGATACAGAGTGATGGCTTCGTTTCTTGATCTGCAGCTCATGGGGTTCAAGAACCCTCCGAGTTCGTTGACCGTCTTTGCTCCGGTTGACCAGGCGGTGGAGAATCCTCTACTGGACCCAATCTCAAGAAACGGCGACGTTTTGCTGCTAAACGAAGTTCCGGTGTACTATGCAAACATGTATTACAGCGACTCCGTTGTGGTTCATGGTCTCCAGGAGAGTCTTGTCGTGCCGGCAGAGGCGCAAGAAGAAGCTGCAGAGGAGTCTTCACAGGAAGAAGCCAGGAGTGAAGCCAGTGGTGATTCACTTCTAATGGATGATGACAGTGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

314

Amino Acids

33.07

Weight (kDa)

4.37

Isoelectric Point (pI)

58.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 703
AccBSI CCGCTC 1 cut(s) 71
AclWI GGATC 3 cut(s) 313, 503, 516
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 2 cut(s) 495, 935
AcyI GRCGYC 2 cut(s) 5, 393
AfaI GTAC 2 cut(s) 541, 773
AfiI CCNNNNNNNGG 5 cut(s) 133, 499, 518, 519, 703
AflIII ACRYGT 1 cut(s) 783
AgsI TTSAA 3 cut(s) 220, 578, 655
AjnI CCWGG 3 cut(s) 696, 819, 887
AluBI AGCT 3 cut(s) 342, 643, 860
AluI AGCT 3 cut(s) 342, 643, 860
Alw26I GTCTC 3 cut(s) 508, 528, 821
AlwI GGATC 3 cut(s) 313, 503, 516
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 5 cut(s) 84, 339, 640, 751, 860
ApoI RAATTY 2 cut(s) 495, 935
AspLEI GCGC 1 cut(s) 850
AspS9I GGNCC 2 cut(s) 600, 721
AsuHPI GGTGA 4 cut(s) 10, 171, 346, 917
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 2 cut(s) 600, 721
BamHI GGATCC 1 cut(s) 508
BanI GGYRCC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 864
BbvI GCAGC 5 cut(s) 96, 351, 652, 738, 847
BccI CCATC 2 cut(s) 200, 613
BceAI ACGGC 2 cut(s) 406, 754
BcgI CGANNNNNNTGC 2 cut(s) 328, 362
BciT130I CCWGG 3 cut(s) 698, 821, 889
BciVI GTATCC 1 cut(s) 602
BclI TGATCA 1 cut(s) 441
BcoDI GTCTC 3 cut(s) 508, 528, 821
BfmI CTRYAG 2 cut(s) 638, 861
BfuI GTATCC 1 cut(s) 602
BisI GCNGC 8 cut(s) 85, 99, 340, 411, 564, 641, 752, 861
BlsI GCNGC 8 cut(s) 86, 100, 341, 412, 565, 642, 753, 862
Bme1390I CCNGG 3 cut(s) 698, 821, 889
Bme18I GGWCC 2 cut(s) 600, 721
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 600, 721
BmiI GGNNCC 5 cut(s) 313, 437, 510, 583, 723
BmrFI CCNGG 3 cut(s) 698, 821, 889
BmsI GCATC 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 864
BplI GAGNNNNNCTC 2 cut(s) 140, 172
BpmI CTGGAG 2 cut(s) 471, 803
BpuEI CTTGAG 1 cut(s) 715
BsaHI GRCGYC 2 cut(s) 5, 393
BsaI GGTCTC 3 cut(s) 508, 528, 821
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 3 cut(s) 499, 688, 766
BsaXI ACNNNNNCTCC 2 cut(s) 782, 812
Bsc4I CCNNNNNNNGG 5 cut(s) 133, 499, 518, 519, 703
Bse118I RCCGGY 3 cut(s) 227, 308, 838
Bse1I ACTGG 3 cut(s) 379, 723, 900
BseBI CCWGG 3 cut(s) 698, 821, 889
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 2 cut(s) 87, 928
BseLI CCNNNNNNNGG 5 cut(s) 133, 499, 518, 519, 703
BseMII CTCAG 2 cut(s) 173, 374
BseNI ACTGG 3 cut(s) 379, 723, 900
BseRI GAGGAG 7 cut(s) 23, 26, 44, 55, 239, 320, 881
BseXI GCAGC 5 cut(s) 96, 351, 652, 738, 847
Bsh1285I CGRYCG 1 cut(s) 552
BshFI GGCC 1 cut(s) 231
BshNI GGYRCC 1 cut(s) 311
BsiEI CGRYCG 1 cut(s) 552
BsiHKCI CYCGRG 1 cut(s) 146
BslFI GGGAC 2 cut(s) 148, 155
BslI CCNNNNNNNGG 5 cut(s) 133, 499, 518, 519, 703
BsmAI GTCTC 3 cut(s) 508, 528, 821
BsmFI GGGAC 2 cut(s) 148, 155
BsnI GGCC 1 cut(s) 231
Bso31I GGTCTC 3 cut(s) 508, 528, 821
BsoBI CYCGRG 1 cut(s) 146
Bsp143I GATC 7 cut(s) 15, 318, 420, 441, 508, 549, 634
Bsp19I CCATGG 1 cut(s) 132
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 2 cut(s) 172, 373
BspLI GGNNCC 5 cut(s) 313, 437, 510, 583, 723
BspMAI CTGCAG 2 cut(s) 642, 865
BspPI GGATC 3 cut(s) 313, 503, 516
BspT107I GGYRCC 1 cut(s) 311
BspTNI GGTCTC 3 cut(s) 508, 528, 821
BsrBI CCGCTC 1 cut(s) 71
BsrFI RCCGGY 3 cut(s) 227, 308, 838
BsrI ACTGG 3 cut(s) 379, 723, 900
BssAI RCCGGY 3 cut(s) 227, 308, 838
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 7 cut(s) 15, 318, 420, 441, 508, 549, 634
BssNI GRCGYC 2 cut(s) 5, 393
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 3 cut(s) 698, 821, 889
Bst4CI ACNGT 4 cut(s) 183, 539, 679, 932
BstACI GRCGYC 2 cut(s) 5, 393
BstC8I GCNNGC 5 cut(s) 225, 229, 233, 310, 840
BstDEI CTNAG 2 cut(s) 159, 360
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 87, 928
BstHHI GCGC 1 cut(s) 850
BstKTI GATC 7 cut(s) 18, 321, 423, 444, 511, 552, 637
BstMAI GTCTC 3 cut(s) 508, 528, 821
BstMBI GATC 7 cut(s) 15, 318, 420, 441, 508, 549, 634
BstMCI CGRYCG 1 cut(s) 552
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 3 cut(s) 698, 821, 889
BstNSI RCATGY 1 cut(s) 787
BstSCI CCNGG 3 cut(s) 696, 819, 887
BstSFI CTRYAG 2 cut(s) 638, 861
BstV1I GCAGC 5 cut(s) 96, 351, 652, 738, 847
BstV2I GAAGAC 1 cut(s) 864
BstX2I RGATCY 2 cut(s) 318, 508
BstYI RGATCY 2 cut(s) 318, 508
BsuI GTATCC 1 cut(s) 602
BsuRI GGCC 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 2 cut(s) 87, 928
BtsIMutI CAGTG 3 cut(s) 372, 907, 937
Cac8I GCNNGC 5 cut(s) 225, 229, 233, 310, 840
CfoI GCGC 1 cut(s) 850
Cfr10I RCCGGY 3 cut(s) 227, 308, 838
Cfr13I GGNCC 2 cut(s) 600, 721
CseI GACGC 1 cut(s) 382
Csp6I GTAC 2 cut(s) 540, 772
CviAII CATG 6 cut(s) 133, 482, 514, 646, 784, 812
CviQI GTAC 2 cut(s) 540, 772
DdeI CTNAG 2 cut(s) 159, 360
DpnI GATC 7 cut(s) 17, 320, 422, 443, 510, 551, 636
DpnII GATC 7 cut(s) 15, 318, 420, 441, 508, 549, 634
EaeI YGGCCR 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 132
Eco31I GGTCTC 3 cut(s) 508, 528, 821
Eco47I GGWCC 2 cut(s) 600, 721
Eco88I CYCGRG 1 cut(s) 146
EcoRI GAATTC 1 cut(s) 495
EcoRII CCWGG 3 cut(s) 696, 819, 887
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 6 cut(s) 136, 485, 517, 649, 787, 815
FaiI YATR 7 cut(s) 134, 483, 515, 647, 777, 785, 813
FaqI GGGAC 2 cut(s) 148, 155
FatI CATG 6 cut(s) 132, 481, 513, 645, 783, 811
FauI CCCGC 4 cut(s) 89, 210, 313, 512
FbaI TGATCA 1 cut(s) 441
Fnu4HI GCNGC 8 cut(s) 85, 99, 340, 411, 564, 641, 752, 861
FokI GGATG 2 cut(s) 74, 935
Fsp4HI GCNGC 8 cut(s) 85, 99, 340, 411, 564, 641, 752, 861
GlaI GCGC 1 cut(s) 849
GluI GCNGC 8 cut(s) 85, 99, 340, 411, 564, 641, 752, 861
GsuI CTGGAG 2 cut(s) 471, 803
HaeIII GGCC 1 cut(s) 231
HgaI GACGC 1 cut(s) 382
HhaI GCGC 1 cut(s) 850
Hin1I GRCGYC 2 cut(s) 5, 393
Hin1II CATG 6 cut(s) 136, 485, 517, 649, 787, 815
Hin6I GCGC 1 cut(s) 848
HinP1I GCGC 1 cut(s) 848
HincII GTYRAC 2 cut(s) 675, 694
HindII GTYRAC 2 cut(s) 675, 694
HinfI GANTC 9 cut(s) 116, 209, 325, 453, 709, 797, 826, 869, 908
HphI GGTGA 4 cut(s) 10, 171, 346, 917
Hpy166II GTNNAC 3 cut(s) 675, 694, 772
Hpy188I TCNGA 4 cut(s) 115, 452, 508, 666
Hpy188III TCNNGA 6 cut(s) 146, 322, 439, 632, 655, 732
Hpy8I GTNNAC 3 cut(s) 675, 694, 772
Hpy99I CGWCG 8 cut(s) 10, 16, 187, 353, 431, 434, 535, 746
HpyAV CCTTC 3 cut(s) 226, 375, 572
HpyCH4III ACNGT 4 cut(s) 183, 539, 679, 932
HpyCH4IV ACGT 1 cut(s) 744
HpyCH4V TGCA 3 cut(s) 640, 779, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 2 cut(s) 159, 360
HpySE526I ACGT 1 cut(s) 744
Hsp92I GRCGYC 2 cut(s) 5, 393
Hsp92II CATG 6 cut(s) 136, 485, 517, 649, 787, 815
HspAI GCGC 1 cut(s) 848
KroI GCCGGC 3 cut(s) 227, 308, 838
KroNI GCCGGC 3 cut(s) 229, 310, 840
Ksp22I TGATCA 1 cut(s) 441
Kzo9I GATC 7 cut(s) 15, 318, 420, 441, 508, 549, 634
LmnI GCTCC 5 cut(s) 306, 347, 490, 581, 691
Lsp1109I GCAGC 5 cut(s) 96, 351, 652, 738, 847
LweI GCATC 1 cut(s) 96
MaeII ACGT 1 cut(s) 744
MaeIII GTNAC 3 cut(s) 177, 352, 400
MalI GATC 7 cut(s) 17, 320, 422, 443, 510, 551, 636
MbiI CCGCTC 1 cut(s) 71
MboI GATC 7 cut(s) 15, 318, 420, 441, 508, 549, 634
MboII GAAGA 4 cut(s) 457, 864, 866, 893
MflI RGATCY 2 cut(s) 318, 508
MluCI AATT 3 cut(s) 254, 495, 935
MlyI GAGTC 6 cut(s) 203, 319, 462, 791, 835, 878
MroNI GCCGGC 3 cut(s) 227, 308, 838
MspR9I CCNGG 3 cut(s) 698, 821, 889
MvaI CCWGG 3 cut(s) 698, 821, 889
MwoI GCNNNNNNNGC 1 cut(s) 272
NaeI GCCGGC 3 cut(s) 229, 310, 840
NcoI CCATGG 1 cut(s) 132
NdeII GATC 7 cut(s) 15, 318, 420, 441, 508, 549, 634
NgoMIV GCCGGC 3 cut(s) 227, 308, 838
NlaIII CATG 6 cut(s) 136, 485, 517, 649, 787, 815
NlaIV GGNNCC 5 cut(s) 313, 437, 510, 583, 723
NmuCI GTSAC 3 cut(s) 177, 352, 400
NspI RCATGY 1 cut(s) 787
PaeR7I CTCGAG 1 cut(s) 146
PciI ACATGT 1 cut(s) 783
PdiI GCCGGC 3 cut(s) 229, 310, 840
PfeI GAWTC 3 cut(s) 116, 709, 908
PflMI CCANNNNNTGG 1 cut(s) 703
PfoI TCCNGGA 1 cut(s) 819
PkrI GCNGC 8 cut(s) 86, 100, 341, 412, 565, 642, 753, 862
Ple19I CGATCG 1 cut(s) 552
PleI GAGTC 6 cut(s) 203, 319, 461, 791, 834, 877
PpsI GAGTC 6 cut(s) 203, 319, 461, 791, 834, 877
PscI ACATGT 1 cut(s) 783
Psp6I CCWGG 3 cut(s) 696, 819, 887
PspGI CCWGG 3 cut(s) 696, 819, 887
PspN4I GGNNCC 5 cut(s) 313, 437, 510, 583, 723
PspPI GGNCC 2 cut(s) 600, 721
PstI CTGCAG 2 cut(s) 642, 865
PsuI RGATCY 2 cut(s) 318, 508
PvuI CGATCG 1 cut(s) 552
RsaI GTAC 2 cut(s) 541, 773
RsaNI GTAC 2 cut(s) 540, 772
SatI GCNGC 8 cut(s) 85, 99, 340, 411, 564, 641, 752, 861
Sau3AI GATC 7 cut(s) 15, 318, 420, 441, 508, 549, 634
Sau96I GGNCC 2 cut(s) 600, 721
SchI GAGTC 6 cut(s) 203, 319, 462, 791, 835, 878
ScrFI CCNGG 3 cut(s) 698, 821, 889
SetI ASST 8 cut(s) 129, 153, 344, 359, 602, 645, 747, 862
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 2 cut(s) 638, 861
Sfr274I CTCGAG 1 cut(s) 146
SinI GGWCC 2 cut(s) 600, 721
SlaI CTCGAG 1 cut(s) 146
SmlI CTYRAG 2 cut(s) 146, 730
SmoI CTYRAG 2 cut(s) 146, 730
Sse9I AATT 3 cut(s) 254, 495, 935
StyD4I CCNGG 3 cut(s) 696, 819, 887
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 4 cut(s) 183, 539, 679, 932
TaiI ACGT 1 cut(s) 747
TaqI TCGA 5 cut(s) 14, 147, 456, 468, 533
TasI AATT 3 cut(s) 254, 495, 935
TatI WGTACW 1 cut(s) 771
TauI GCSGC 3 cut(s) 101, 413, 566
TfiI GAWTC 3 cut(s) 116, 709, 908
TscAI CASTG 3 cut(s) 379, 907, 937
TseFI GTSAC 3 cut(s) 177, 352, 400
TseI GCWGC 5 cut(s) 84, 339, 640, 751, 860
Tsp45I GTSAC 3 cut(s) 177, 352, 400
TspDTI ATGAA 1 cut(s) 800
TspGWI ACGGA 1 cut(s) 790
TspRI CASTG 3 cut(s) 379, 907, 937
Van91I CCANNNNNTGG 1 cut(s) 703
VpaK11BI GGWCC 2 cut(s) 600, 721
XapI RAATTY 2 cut(s) 495, 935
XceI RCATGY 1 cut(s) 787
XhoI CTCGAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.