Rh4CG409900

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000614
Physical Location & Seq
Reverse (-)
65503401 .. 65504075
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG409900.1

Sequence Viewer

Length: 675 bp
ATGGCGGCCGAAACGGCGGCGCATTACCCGTTCAGTGAAGCAAGCAAGGTGCTGAAATTGAAAGGCTGCTCTGTTATGGCTTCGTTTCTTGAAATGCAATTCCATGGGTTTCTCAAGTACCAGACCATGTTGACCGTCTTCGCTCCCGTTGACCAAGCCATGGTGCCCCGAATCGGAGATCTGAGCGGGTACTCGTCGATCTTAAGCCGCCACGTGGTCCCCTGCAAGTTTTCTTGGAACGATTTGGTGAGTCTCGACGACGGCACTGTGTTGAGGACTAATCTGCAAGGGTTTATGATCAACATCACTCGATACGACGGCGTTTTGGTGCTCAATGGGGTCCCGGTGATAATGCCGGAGATGTATCACAACGGCTGGCTTGTGGTTCACGGAATCAGTGAGGTTCTTGAGTTTCCAGAGAGTCCACCGGAGCAAGTGGTGGATGTGGTGGCTCCTTCACCTGTCTCTGAGGCAGATGGTCACAGCTCCGGTGAGGATGAGAGTGCCGGAACAGAGCCTTCGGAGCCAGTAATAGAGGTGCCTTCTTCACCGGAATTCGATAGCAGCGATTCGGAGGAATTGGATACTGGCGATTCTGAGCTATTTGCAAACATGTCTACCGATGATGAAGGAGCCATTTCACACAGGCGCTTCTTTGTTTACAGGCCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

224

Amino Acids

24.52

Weight (kDa)

4.38

Isoelectric Point (pI)

64.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 24 - 136 1.3e-09 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 163, 538
AccB7I CCANNNNNTGG 1 cut(s) 160
AccBSI CCGCTC 1 cut(s) 186
AccI GTMKAC 1 cut(s) 617
AciI CCGC 4 cut(s) 5, 17, 186, 208
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 554
AcvI CACGTG 1 cut(s) 214
AfaI GTAC 2 cut(s) 119, 191
AfiI CCNNNNNNNGG 3 cut(s) 160, 173, 214
AflII CTTAAG 1 cut(s) 202
AflIII ACRYGT 1 cut(s) 612
AgsI TTSAA 2 cut(s) 61, 92
AluBI AGCT 2 cut(s) 486, 601
AluI AGCT 2 cut(s) 486, 601
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 2 cut(s) 257, 469
AoxI GGCC 2 cut(s) 6, 665
ApeKI GCWGC 2 cut(s) 66, 564
ApoI RAATTY 1 cut(s) 554
AspLEI GCGC 2 cut(s) 22, 651
AspS9I GGNCC 2 cut(s) 217, 340
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 5 cut(s) 259, 358, 450, 503, 540
AvaII GGWCC 2 cut(s) 217, 340
BaeGI GKGCMC 1 cut(s) 168
BanI GGYRCC 2 cut(s) 163, 538
BbrPI CACGTG 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 2 cut(s) 53, 576
BccI CCATC 1 cut(s) 470
BceAI ACGGC 4 cut(s) 30, 277, 334, 388
BciVI GTATCC 1 cut(s) 577
BclI TGATCA 1 cut(s) 297
BcnI CCSGG 1 cut(s) 344
BcoDI GTCTC 2 cut(s) 257, 469
BfoI RGCGCY 1 cut(s) 652
BfrI CTTAAG 1 cut(s) 202
BfuI GTATCC 1 cut(s) 577
BglI GCCNNNNNGGC 1 cut(s) 14
BglII AGATCT 1 cut(s) 178
BisI GCNGC 5 cut(s) 6, 18, 67, 208, 565
BlsI GCNGC 5 cut(s) 7, 19, 68, 209, 566
Bme1390I CCNGG 1 cut(s) 344
Bme18I GGWCC 2 cut(s) 217, 340
BmgT120I GGNCC 2 cut(s) 217, 340
BmiI GGNNCC 8 cut(s) 165, 219, 341, 342, 453, 525, 540, 634
BmrFI CCNGG 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 130
BpuEI CTTGAG 2 cut(s) 98, 428
BpuMI CCSGG 1 cut(s) 344
BsaAI YACGTR 1 cut(s) 214
BsaBI GATNNNNATC 1 cut(s) 302
BsaJI CCNNGG 2 cut(s) 103, 159
BsaWI WCCGGW 3 cut(s) 427, 488, 550
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 173, 214
Bse1I ACTGG 2 cut(s) 527, 592
Bse8I GATNNNNATC 1 cut(s) 302
BseDI CCNNGG 2 cut(s) 103, 159
BseGI GGATG 2 cut(s) 448, 502
BseJI GATNNNNATC 1 cut(s) 302
BseLI CCNNNNNNNGG 3 cut(s) 160, 173, 214
BseMII CTCAG 3 cut(s) 173, 459, 588
BseNI ACTGG 2 cut(s) 527, 592
BseSI GKGCMC 1 cut(s) 168
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 2 cut(s) 53, 576
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 8, 667
BshNI GGYRCC 2 cut(s) 163, 538
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 6 cut(s) 344, 356, 428, 489, 507, 551
BslFI GGGAC 2 cut(s) 203, 326
BslI CCNNNNNNNGG 3 cut(s) 160, 173, 214
BsmAI GTCTC 2 cut(s) 257, 469
BsmFI GGGAC 2 cut(s) 203, 326
BsnI GGCC 2 cut(s) 8, 667
Bsp1286I GDGCHC 2 cut(s) 168, 333
Bsp143I GATC 3 cut(s) 178, 198, 297
Bsp19I CCATGG 2 cut(s) 103, 159
BspACI CCGC 4 cut(s) 5, 17, 186, 208
BspANI GGCC 2 cut(s) 8, 667
BspCNI CTCAG 3 cut(s) 174, 460, 589
BspLI GGNNCC 8 cut(s) 165, 219, 341, 342, 453, 525, 540, 634
BspT107I GGYRCC 2 cut(s) 163, 538
BspTI CTTAAG 1 cut(s) 202
BsrBI CCGCTC 1 cut(s) 186
BsrI ACTGG 2 cut(s) 527, 592
BssECI CCNNGG 2 cut(s) 103, 159
BssMI GATC 3 cut(s) 178, 198, 297
BssT1I CCWWGG 2 cut(s) 103, 159
Bst4CI ACNGT 2 cut(s) 136, 268
BstAFI CTTAAG 1 cut(s) 202
BstBAI YACGTR 1 cut(s) 214
BstC8I GCNNGC 2 cut(s) 43, 377
BstDEI CTNAG 3 cut(s) 182, 468, 597
BstDSI CCRYGG 2 cut(s) 103, 159
BstF5I GGATG 2 cut(s) 448, 502
BstH2I RGCGCY 1 cut(s) 652
BstHHI GCGC 2 cut(s) 22, 651
BstKTI GATC 3 cut(s) 181, 201, 300
BstMAI GTCTC 2 cut(s) 257, 469
BstMBI GATC 3 cut(s) 178, 198, 297
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 14, 523
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 1 cut(s) 342
BstSLI GKGCMC 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 53, 576
BstV2I GAAGAC 1 cut(s) 130
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BstZI CGGCCG 1 cut(s) 6
BsuI GTATCC 1 cut(s) 577
BsuRI GGCC 2 cut(s) 8, 667
BtgI CCRYGG 2 cut(s) 103, 159
BtsCI GGATG 2 cut(s) 448, 502
BtsIMutI CAGTG 3 cut(s) 40, 264, 403
Cac8I GCNNGC 2 cut(s) 43, 377
CfoI GCGC 2 cut(s) 22, 651
Cfr13I GGNCC 2 cut(s) 217, 340
Csp6I GTAC 2 cut(s) 118, 190
CviAII CATG 4 cut(s) 104, 127, 160, 613
CviQI GTAC 2 cut(s) 118, 190
DdeI CTNAG 3 cut(s) 182, 468, 597
DpnI GATC 3 cut(s) 180, 200, 299
DpnII GATC 3 cut(s) 178, 198, 297
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
EclXI CGGCCG 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 103, 159
Eco147I AGGCCT 1 cut(s) 667
Eco47I GGWCC 2 cut(s) 217, 340
Eco52I CGGCCG 1 cut(s) 6
Eco72I CACGTG 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 340
EcoRI GAATTC 1 cut(s) 554
EcoT14I CCWWGG 2 cut(s) 103, 159
ErhI CCWWGG 2 cut(s) 103, 159
FaeI CATG 4 cut(s) 107, 130, 163, 616
FaiI YATR 7 cut(s) 77, 105, 128, 161, 296, 614, 673
FaqI GGGAC 2 cut(s) 203, 326
FatI CATG 4 cut(s) 103, 126, 159, 612
FauI CCCGC 1 cut(s) 179
FbaI TGATCA 1 cut(s) 297
FblI GTMKAC 1 cut(s) 617
Fnu4HI GCNGC 5 cut(s) 6, 18, 67, 208, 565
FokI GGATG 2 cut(s) 455, 509
Fsp4HI GCNGC 5 cut(s) 6, 18, 67, 208, 565
GlaI GCGC 2 cut(s) 21, 650
GluI GCNGC 5 cut(s) 6, 18, 67, 208, 565
HaeII RGCGCY 1 cut(s) 652
HaeIII GGCC 2 cut(s) 8, 667
HapII CCGG 6 cut(s) 344, 356, 428, 489, 507, 551
HhaI GCGC 2 cut(s) 22, 651
Hin1II CATG 4 cut(s) 107, 130, 163, 616
Hin6I GCGC 2 cut(s) 20, 649
HinP1I GCGC 2 cut(s) 20, 649
HincII GTYRAC 2 cut(s) 132, 151
HindII GTYRAC 2 cut(s) 132, 151
HinfI GANTC 6 cut(s) 171, 250, 393, 421, 569, 593
HpaII CCGG 6 cut(s) 344, 356, 428, 489, 507, 551
HphI GGTGA 5 cut(s) 259, 358, 450, 503, 540
Hpy166II GTNNAC 6 cut(s) 132, 151, 388, 425, 618, 661
Hpy188I TCNGA 6 cut(s) 176, 183, 469, 523, 574, 598
Hpy188III TCNNGA 4 cut(s) 89, 254, 407, 416
Hpy8I GTNNAC 6 cut(s) 132, 151, 388, 425, 618, 661
Hpy99I CGWCG 4 cut(s) 199, 260, 263, 320
HpyAV CCTTC 4 cut(s) 465, 528, 552, 623
HpyCH4III ACNGT 2 cut(s) 136, 268
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 4 cut(s) 97, 225, 286, 608
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 523
HpyF3I CTNAG 3 cut(s) 182, 468, 597
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 4 cut(s) 107, 130, 163, 616
HspAI GCGC 2 cut(s) 20, 649
KflI GGGWCCC 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 297
Kzo9I GATC 3 cut(s) 178, 198, 297
LmnI GCTCC 6 cut(s) 148, 430, 457, 491, 523, 632
Lsp1109I GCAGC 2 cut(s) 53, 576
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 479
MalI GATC 3 cut(s) 180, 200, 299
MbiI CCGCTC 1 cut(s) 186
MboI GATC 3 cut(s) 178, 198, 297
MboII GAAGA 2 cut(s) 130, 537
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 2 cut(s) 168, 333
MluCI AATT 4 cut(s) 56, 98, 554, 578
MlyI GAGTC 2 cut(s) 259, 430
MnlI CCTC 6 cut(s) 267, 394, 463, 487, 529, 568
MseI TTAA 1 cut(s) 203
MspCI CTTAAG 1 cut(s) 202
MspI CCGG 6 cut(s) 344, 356, 428, 489, 507, 551
MspR9I CCNGG 1 cut(s) 344
MwoI GCNNNNNNNGC 2 cut(s) 14, 523
NciI CCSGG 1 cut(s) 344
NcoI CCATGG 2 cut(s) 103, 159
NdeII GATC 3 cut(s) 178, 198, 297
NlaIII CATG 4 cut(s) 107, 130, 163, 616
NlaIV GGNNCC 8 cut(s) 165, 219, 341, 342, 453, 525, 540, 634
NmuCI GTSAC 1 cut(s) 479
NspI RCATGY 1 cut(s) 616
PceI AGGCCT 1 cut(s) 667
PciI ACATGT 1 cut(s) 612
PcsI WCGNNNNNNNCGW 1 cut(s) 564
PfeI GAWTC 4 cut(s) 171, 393, 569, 593
PflMI CCANNNNNTGG 1 cut(s) 160
PkrI GCNGC 5 cut(s) 7, 19, 68, 209, 566
PleI GAGTC 2 cut(s) 258, 429
PmaCI CACGTG 1 cut(s) 214
PmlI CACGTG 1 cut(s) 214
PpsI GAGTC 2 cut(s) 258, 429
Ppu21I YACGTR 1 cut(s) 214
PpuMI RGGWCCY 1 cut(s) 340
PscI ACATGT 1 cut(s) 612
Psp5II RGGWCCY 1 cut(s) 340
PspCI CACGTG 1 cut(s) 214
PspN4I GGNNCC 8 cut(s) 165, 219, 341, 342, 453, 525, 540, 634
PspPI GGNCC 2 cut(s) 217, 340
PspPPI RGGWCCY 1 cut(s) 340
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 2 cut(s) 119, 191
RsaNI GTAC 2 cut(s) 118, 190
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 5 cut(s) 6, 18, 67, 208, 565
Sau3AI GATC 3 cut(s) 178, 198, 297
Sau96I GGNCC 2 cut(s) 217, 340
SchI GAGTC 2 cut(s) 259, 430
ScrFI CCNGG 1 cut(s) 344
SduI GDGCHC 2 cut(s) 168, 333
SetI ASST 7 cut(s) 51, 216, 405, 463, 488, 540, 603
SinI GGWCC 2 cut(s) 217, 340
SmlI CTYRAG 3 cut(s) 113, 202, 407
SmoI CTYRAG 3 cut(s) 113, 202, 407
Sse9I AATT 4 cut(s) 56, 98, 554, 578
SseBI AGGCCT 1 cut(s) 667
SsiI CCGC 4 cut(s) 5, 17, 186, 208
StuI AGGCCT 1 cut(s) 667
StyD4I CCNGG 1 cut(s) 342
StyI CCWWGG 2 cut(s) 103, 159
TaaI ACNGT 2 cut(s) 136, 268
TaiI ACGT 1 cut(s) 216
TaqI TCGA 4 cut(s) 197, 255, 310, 558
TasI AATT 4 cut(s) 56, 98, 554, 578
TauI GCSGC 3 cut(s) 8, 20, 210
TfiI GAWTC 4 cut(s) 171, 393, 569, 593
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TscAI CASTG 3 cut(s) 40, 271, 403
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 2 cut(s) 66, 564
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 2 cut(s) 642, 660
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 3 cut(s) 40, 271, 403
Van91I CCANNNNNTGG 1 cut(s) 160
Vha464I CTTAAG 1 cut(s) 202
VpaK11BI GGWCC 2 cut(s) 217, 340
XapI RAATTY 1 cut(s) 554
XceI RCATGY 1 cut(s) 616
XmiI GTMKAC 1 cut(s) 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.