Rmu_sc0005054.1_g000012

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005054.1
OG0000614
Physical Location & Seq
Reverse (-)
49897 .. 50949
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005054.1_g000012.1.cds

Sequence Viewer

Length: 1053 bp
atggcgtcgccgtcgatcaccgccctctctctcctccttctcatctccctcctctctctctcctccgctctcccctcccgcagcatcctcaacgccgccgaagtactctccgattccggctacctctccatggctctcactctcgaggtcgtctctcagtccctcgtccccaagtccccgtcgcttaccatctttgctccgccggactccgccttcaagcgagccggccagccctccctctctctcctccaattccacttcgcccctctcgctctccctctccaaaccctaaaatcgctccccgccggcaccaagatcccgactctcctctccggcagctccctcgtcgtcacctcgcctccttccggcaccggactttctctcaacggcgtcagggtcacaaccgccgcctctccgatctacgacgacgggttcctgatcattctcggagtcgaggacttcttcgacccgaacttccatgctcccgccccgacccgaatccctgtttcggatccgatgtgcgggtcgccttcgtcgaacggtacaagcacgatcaggtttccggcggcttcttggtttgaaggagccaaaggcgtgatgaggtccaatggatacagagtgatggcctcgtttcttgatctgcagctcatggggttcaagaaccctccgagttcgttgaccgtctttgctccggttgaccaggcggtggagaatcctctactggacccgtcgatctttctacgacacgtcgttccttgccggcttgtttggtccgatttggtgaatttcagtgaagggacggtgcttccaacctatatggccgggttcaccatcagaatctcaagaaacggcgaagttttgctgctcaacgaagttccggtgtactatgcaaacatgtattacagcgactccgttgtggttcatggtctccaggagagtcttgtaatgccggcagaggcgcaagaagaggctgcagaggagtcttcacaggaagaagctgggagtgaaaccagtgatgattcacttctaatggatgatgacagtgaattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

350

Amino Acids

37.31

Weight (kDa)

4.44

Isoelectric Point (pI)

57.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 308, 368
AccB7I CCANNNNNTGG 1 cut(s) 706
AccBSI CCGCTC 1 cut(s) 68
AclWI GGATC 3 cut(s) 310, 506, 519
AcoI YGGCCR 2 cut(s) 226, 819
AcsI RAATTY 2 cut(s) 784, 1046
AcyI GRCGYC 2 cut(s) 5, 390
AfaI GTAC 3 cut(s) 105, 544, 884
AfiI CCNNNNNNNGG 5 cut(s) 130, 365, 508, 521, 706
AflIII ACRYGT 2 cut(s) 745, 894
AgsI TTSAA 3 cut(s) 217, 581, 658
AjiI CACGTC 1 cut(s) 748
AjnI CCWGG 2 cut(s) 699, 930
AluBI AGCT 3 cut(s) 339, 646, 998
AluI AGCT 3 cut(s) 339, 646, 998
Alw26I GTCTC 2 cut(s) 157, 932
AlwI GGATC 3 cut(s) 310, 506, 519
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 3 cut(s) 226, 624, 819
ApeKI GCWGC 5 cut(s) 81, 336, 643, 862, 971
ApoI RAATTY 2 cut(s) 784, 1046
AspLEI GCGC 1 cut(s) 961
AspS9I GGNCC 3 cut(s) 603, 724, 771
AsuC2I CCSGG 1 cut(s) 823
AsuHPI GGTGA 4 cut(s) 10, 343, 793, 820
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 3 cut(s) 603, 724, 771
BamHI GGATCC 1 cut(s) 511
BanI GGYRCC 2 cut(s) 308, 368
BbsI GAAGAC 1 cut(s) 975
BbvI GCAGC 5 cut(s) 93, 348, 655, 849, 958
BccI CCATC 3 cut(s) 197, 616, 839
BceAI ACGGC 2 cut(s) 403, 865
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BciT130I CCWGG 2 cut(s) 701, 932
BciVI GTATCC 1 cut(s) 605
BclI TGATCA 1 cut(s) 438
BcnI CCSGG 1 cut(s) 823
BcoDI GTCTC 2 cut(s) 157, 932
BfmI CTRYAG 2 cut(s) 641, 972
BfuI GTATCC 1 cut(s) 605
BisI GCNGC 8 cut(s) 82, 96, 337, 408, 567, 644, 863, 972
BlsI GCNGC 8 cut(s) 83, 97, 338, 409, 568, 645, 864, 973
BmcAI AGTACT 1 cut(s) 105
Bme1390I CCNGG 3 cut(s) 701, 823, 932
Bme18I GGWCC 3 cut(s) 603, 724, 771
BmeT110I CYCGRG 1 cut(s) 143
BmgBI CACGTC 1 cut(s) 748
BmgT120I GGNCC 3 cut(s) 603, 724, 771
BmiI GGNNCC 6 cut(s) 310, 370, 434, 513, 586, 726
BmrFI CCNGG 3 cut(s) 701, 823, 932
BmsI GCATC 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 975
BplI GAGNNNNNCTC 2 cut(s) 137, 169
BpmI CTGGAG 1 cut(s) 914
BpuEI CTTGAG 1 cut(s) 826
BpuMI CCSGG 1 cut(s) 823
BsaHI GRCGYC 2 cut(s) 5, 390
BsaI GGTCTC 1 cut(s) 932
BsaJI CCNNGG 1 cut(s) 129
BsaWI WCCGGW 3 cut(s) 371, 691, 877
BsaXI ACNNNNNCTCC 4 cut(s) 343, 373, 893, 923
Bsc4I CCNNNNNNNGG 5 cut(s) 130, 365, 508, 521, 706
Bse118I RCCGGY 4 cut(s) 224, 305, 759, 949
Bse1I ACTGG 2 cut(s) 726, 1011
BseBI CCWGG 2 cut(s) 701, 932
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 2 cut(s) 84, 1039
BseLI CCNNNNNNNGG 5 cut(s) 130, 365, 508, 521, 706
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 2 cut(s) 726, 1011
BseRI GAGGAG 6 cut(s) 23, 41, 52, 236, 317, 992
BseXI GCAGC 5 cut(s) 93, 348, 655, 849, 958
BseYI CCCAGC 1 cut(s) 998
BshFI GGCC 3 cut(s) 228, 626, 821
BshNI GGYRCC 2 cut(s) 308, 368
BsiHKCI CYCGRG 1 cut(s) 143
BslFI GGGAC 4 cut(s) 145, 152, 160, 811
BslI CCNNNNNNNGG 5 cut(s) 130, 365, 508, 521, 706
BsmAI GTCTC 2 cut(s) 157, 932
BsmBI CGTCTC 1 cut(s) 157
BsmFI GGGAC 4 cut(s) 145, 152, 160, 811
BsnI GGCC 3 cut(s) 228, 626, 821
Bso31I GGTCTC 1 cut(s) 932
BsoBI CYCGRG 1 cut(s) 143
Bsp143I GATC 8 cut(s) 15, 315, 417, 438, 511, 552, 637, 732
Bsp19I CCATGG 1 cut(s) 129
BspANI GGCC 3 cut(s) 228, 626, 821
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 6 cut(s) 310, 370, 434, 513, 586, 726
BspMAI CTGCAG 2 cut(s) 645, 976
BspPI GGATC 3 cut(s) 310, 506, 519
BspT107I GGYRCC 2 cut(s) 308, 368
BspTNI GGTCTC 1 cut(s) 932
BsrBI CCGCTC 1 cut(s) 68
BsrFI RCCGGY 4 cut(s) 224, 305, 759, 949
BsrI ACTGG 2 cut(s) 726, 1011
BssAI RCCGGY 4 cut(s) 224, 305, 759, 949
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 8 cut(s) 15, 315, 417, 438, 511, 552, 637, 732
BssNI GRCGYC 2 cut(s) 5, 390
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 2 cut(s) 701, 932
Bst4CI ACNGT 4 cut(s) 542, 682, 802, 1043
Bst6I CTCTTC 1 cut(s) 960
BstACI GRCGYC 2 cut(s) 5, 390
BstC8I GCNNGC 6 cut(s) 222, 226, 230, 307, 761, 951
BstDEI CTNAG 1 cut(s) 156
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 2 cut(s) 84, 1039
BstHHI GCGC 1 cut(s) 961
BstKTI GATC 8 cut(s) 18, 318, 420, 441, 514, 555, 640, 735
BstMAI GTCTC 2 cut(s) 157, 932
BstMBI GATC 8 cut(s) 15, 315, 417, 438, 511, 552, 637, 732
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 2 cut(s) 701, 932
BstNSI RCATGY 1 cut(s) 898
BstSCI CCNGG 3 cut(s) 699, 821, 930
BstSFI CTRYAG 2 cut(s) 641, 972
BstV1I GCAGC 5 cut(s) 93, 348, 655, 849, 958
BstV2I GAAGAC 1 cut(s) 975
BstX2I RGATCY 2 cut(s) 315, 511
BstYI RGATCY 2 cut(s) 315, 511
BsuI GTATCC 1 cut(s) 605
BsuRI GGCC 3 cut(s) 228, 626, 821
BtgI CCRYGG 1 cut(s) 129
BtrI CACGTC 1 cut(s) 748
BtsCI GGATG 2 cut(s) 84, 1039
BtsIMutI CAGTG 3 cut(s) 796, 1018, 1048
Cac8I GCNNGC 6 cut(s) 222, 226, 230, 307, 761, 951
CfoI GCGC 1 cut(s) 961
Cfr10I RCCGGY 4 cut(s) 224, 305, 759, 949
Cfr13I GGNCC 3 cut(s) 603, 724, 771
CseI GACGC 1 cut(s) 379
Csp6I GTAC 3 cut(s) 104, 543, 883
CviAII CATG 5 cut(s) 130, 479, 649, 895, 923
CviQI GTAC 3 cut(s) 104, 543, 883
DdeI CTNAG 1 cut(s) 156
DpnI GATC 8 cut(s) 17, 317, 419, 440, 513, 554, 639, 734
DpnII GATC 8 cut(s) 15, 315, 417, 438, 511, 552, 637, 732
EaeI YGGCCR 2 cut(s) 226, 819
Eam1104I CTCTTC 1 cut(s) 960
EarI CTCTTC 1 cut(s) 960
EciI GGCGGA 2 cut(s) 189, 199
Eco130I CCWWGG 1 cut(s) 129
Eco31I GGTCTC 1 cut(s) 932
Eco47I GGWCC 3 cut(s) 603, 724, 771
Eco88I CYCGRG 1 cut(s) 143
EcoRII CCWGG 2 cut(s) 699, 930
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
Esp3I CGTCTC 1 cut(s) 157
FaeI CATG 5 cut(s) 133, 482, 652, 898, 926
FaiI YATR 8 cut(s) 131, 480, 650, 816, 818, 888, 896, 924
FaqI GGGAC 4 cut(s) 145, 152, 160, 811
FatI CATG 5 cut(s) 129, 478, 648, 894, 922
FauI CCCGC 4 cut(s) 86, 310, 493, 515
FbaI TGATCA 1 cut(s) 438
Fnu4HI GCNGC 8 cut(s) 82, 96, 337, 408, 567, 644, 863, 972
FokI GGATG 2 cut(s) 71, 1046
Fsp4HI GCNGC 8 cut(s) 82, 96, 337, 408, 567, 644, 863, 972
GlaI GCGC 1 cut(s) 960
GluI GCNGC 8 cut(s) 82, 96, 337, 408, 567, 644, 863, 972
GsaI CCCAGC 1 cut(s) 1002
GsuI CTGGAG 1 cut(s) 914
HaeIII GGCC 3 cut(s) 228, 626, 821
HgaI GACGC 1 cut(s) 379
HhaI GCGC 1 cut(s) 961
Hin1I GRCGYC 2 cut(s) 5, 390
Hin1II CATG 5 cut(s) 133, 482, 652, 898, 926
Hin6I GCGC 1 cut(s) 959
HinP1I GCGC 1 cut(s) 959
HincII GTYRAC 2 cut(s) 678, 697
HindII GTYRAC 2 cut(s) 678, 697
HphI GGTGA 4 cut(s) 10, 343, 793, 820
Hpy166II GTNNAC 4 cut(s) 678, 697, 828, 883
Hpy188I TCNGA 8 cut(s) 112, 417, 449, 511, 516, 669, 775, 836
Hpy188III TCNNGA 6 cut(s) 143, 319, 436, 635, 658, 843
Hpy8I GTNNAC 4 cut(s) 678, 697, 828, 883
Hpy99I CGWCG 9 cut(s) 10, 16, 184, 350, 428, 431, 538, 733, 752
HpyAV CCTTC 6 cut(s) 47, 223, 372, 540, 575, 788
HpyCH4III ACNGT 4 cut(s) 542, 682, 802, 1043
HpyCH4IV ACGT 1 cut(s) 747
HpyCH4V TGCA 3 cut(s) 643, 890, 974
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 747
Hsp92I GRCGYC 2 cut(s) 5, 390
Hsp92II CATG 5 cut(s) 133, 482, 652, 898, 926
HspAI GCGC 1 cut(s) 959
KroI GCCGGC 4 cut(s) 224, 305, 759, 949
KroNI GCCGGC 4 cut(s) 226, 307, 761, 951
Ksp22I TGATCA 1 cut(s) 438
Kzo9I GATC 8 cut(s) 15, 315, 417, 438, 511, 552, 637, 732
LmnI GCTCC 6 cut(s) 202, 303, 344, 487, 584, 694
Lsp1109I GCAGC 5 cut(s) 93, 348, 655, 849, 958
LweI GCATC 1 cut(s) 93
MaeII ACGT 1 cut(s) 747
MaeIII GTNAC 2 cut(s) 349, 397
MalI GATC 8 cut(s) 17, 317, 419, 440, 513, 554, 639, 734
MbiI CCGCTC 1 cut(s) 68
MboI GATC 8 cut(s) 15, 315, 417, 438, 511, 552, 637, 732
MboII GAAGA 4 cut(s) 454, 975, 977, 1004
MflI RGATCY 2 cut(s) 315, 511
MluCI AATT 3 cut(s) 251, 784, 1046
MlyI GAGTC 6 cut(s) 200, 316, 459, 902, 946, 989
MmeI TCCRAC 1 cut(s) 833
MroNI GCCGGC 4 cut(s) 224, 305, 759, 949
MspR9I CCNGG 3 cut(s) 701, 823, 932
MvaI CCWGG 2 cut(s) 701, 932
MwoI GCNNNNNNNGC 1 cut(s) 269
NaeI GCCGGC 4 cut(s) 226, 307, 761, 951
NciI CCSGG 1 cut(s) 823
NcoI CCATGG 1 cut(s) 129
NdeII GATC 8 cut(s) 15, 315, 417, 438, 511, 552, 637, 732
NgoMIV GCCGGC 4 cut(s) 224, 305, 759, 949
NlaIII CATG 5 cut(s) 133, 482, 652, 898, 926
NlaIV GGNNCC 6 cut(s) 310, 370, 434, 513, 586, 726
NmuCI GTSAC 2 cut(s) 349, 397
NspI RCATGY 1 cut(s) 898
PaeR7I CTCGAG 1 cut(s) 143
PciI ACATGT 1 cut(s) 894
PcsI WCGNNNNNNNCGW 1 cut(s) 533
PdiI GCCGGC 4 cut(s) 226, 307, 761, 951
PfeI GAWTC 5 cut(s) 113, 498, 712, 837, 1019
PflMI CCANNNNNTGG 1 cut(s) 706
PfoI TCCNGGA 1 cut(s) 930
PkrI GCNGC 8 cut(s) 83, 97, 338, 409, 568, 645, 864, 973
PleI GAGTC 6 cut(s) 200, 316, 458, 902, 945, 988
PpsI GAGTC 6 cut(s) 200, 316, 458, 902, 945, 988
PscI ACATGT 1 cut(s) 894
Psp6I CCWGG 2 cut(s) 699, 930
PspFI CCCAGC 1 cut(s) 998
PspGI CCWGG 2 cut(s) 699, 930
PspN4I GGNNCC 6 cut(s) 310, 370, 434, 513, 586, 726
PspPI GGNCC 3 cut(s) 603, 724, 771
PstI CTGCAG 2 cut(s) 645, 976
PsuI RGATCY 2 cut(s) 315, 511
RsaI GTAC 3 cut(s) 105, 544, 884
RsaNI GTAC 3 cut(s) 104, 543, 883
SatI GCNGC 8 cut(s) 82, 96, 337, 408, 567, 644, 863, 972
Sau3AI GATC 8 cut(s) 15, 315, 417, 438, 511, 552, 637, 732
Sau96I GGNCC 3 cut(s) 603, 724, 771
ScaI AGTACT 1 cut(s) 105
SchI GAGTC 6 cut(s) 200, 316, 459, 902, 946, 989
ScrFI CCNGG 3 cut(s) 701, 823, 932
SfaNI GCATC 1 cut(s) 93
SfcI CTRYAG 2 cut(s) 641, 972
Sfr274I CTCGAG 1 cut(s) 143
SinI GGWCC 3 cut(s) 603, 724, 771
SlaI CTCGAG 1 cut(s) 143
SmlI CTYRAG 2 cut(s) 143, 841
SmoI CTYRAG 2 cut(s) 143, 841
Sse9I AATT 3 cut(s) 251, 784, 1046
StyD4I CCNGG 3 cut(s) 699, 821, 930
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 4 cut(s) 542, 682, 802, 1043
TaiI ACGT 1 cut(s) 750
TaqI TCGA 6 cut(s) 14, 144, 453, 465, 536, 731
TasI AATT 3 cut(s) 251, 784, 1046
TatI WGTACW 2 cut(s) 103, 882
TauI GCSGC 3 cut(s) 98, 410, 569
TfiI GAWTC 5 cut(s) 113, 498, 712, 837, 1019
TscAI CASTG 3 cut(s) 796, 1018, 1048
TseFI GTSAC 2 cut(s) 349, 397
TseI GCWGC 5 cut(s) 81, 336, 643, 862, 971
Tsp45I GTSAC 2 cut(s) 349, 397
TspDTI ATGAA 1 cut(s) 911
TspGWI ACGGA 1 cut(s) 901
TspRI CASTG 3 cut(s) 796, 1018, 1048
Van91I CCANNNNNTGG 1 cut(s) 706
VpaK11BI GGWCC 3 cut(s) 603, 724, 771
XapI RAATTY 2 cut(s) 784, 1046
XceI RCATGY 1 cut(s) 898
XhoI CTCGAG 1 cut(s) 143
ZrmI AGTACT 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.