pycom13g02560

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000614
Physical Location & Seq
Forward (+)
1786468 .. 1787562
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g02560.1

Sequence Viewer

Length: 1095 bp
ATGACCGCCTCCAAGGTCCTCCTCTCTTTCCTTCTCCTCGTCCTCTCACTCTTCTCTCTCTCCTCCGCCCTCCACACCCAAACCCTCTTCAACGCCGCCGAAATCCTCTCAGATTCCGGCTACACCTCCATGTCCCTGACCCTCGAGCTCGCCTCCCGCACCCTCCTCAGTTCCCGCTCTCCTTCCCTCACCATCTTTGCACCCAACGACGCCGCGTTCGCTCACTCAGGCCAGCCGCCGCTGACCCTCCTCCAATACCACCTCCTACCCCTCCATTTCTCTCTCCGATCGCTAAAGTCCCTCCCTTTTGGCGCCAAGATAGCAACTTTACTCTCCGACCGCACTCTCACCGTCACCACTCTGCCGTCCGATCACCGCTTCTCGCTCAACAACGTCACCGTCACTGCTTCCCCAATTTTCGATGATGGGTCCCTGATAATTTTCGGAATCGACAGGTTCTTGGATCCGTATTTTCGGATTTCCGGTCCTATTCAGGGCTACACCCCCAAGAATCTCGGTTGCTTGGCTCCCAAGGAAAACCCAGATCAGACGATGGATCTCAGAGACGGTTACGTCCCCTTCAACGACGCCTCCGCCACCCTGAGATCCAAGGGGTGCTCTGTCATGGCATCGTTTCTTGAACTACAATTTCATGGTTCTTTCTTCAAGTTCCAGACGATGCTGACTGTGTTTGCTCCGTTTGACCAAGTTCTGATGAACCGGGTCGGGAACCTGACCGAGTACTCCTCCATCTTCCACCGCCACGTGGTGCCCTGCCGGCTTTCTTGGAGTGATTTGGTGAGCTTGGATGATGAGACGGTTCTGAGGACTAATCTGGTGGGGTTTTCGATGAATATCACCCGCTCCGATGACATCTTGAAGCTCAACGGCGTGTCGGTTATCTTGCCGGAAGTTTACCACAATGAGTGGCTTATGGTGCACGGAATAAGTGAAGTTCTTGAGGTGCCAGAGAGAACTGAGGAAACAGAGCGACCGGAACAAGTGACTGTGGCTTCACCTGAATTTGGTAACAGCTCCCCTGCCAATGAGAATACGATTAGTCACAGCCATTTCTTTACTTACATGCATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

365

Amino Acids

40.44

Weight (kDa)

5.58

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 55 - 156 7.9e-08 Fasciclin domain
Fasciclin PF02469 225 - 320 3.3e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 572
AccB1I GGYRCC 3 cut(s) 311, 769, 964
AccBSI CCGCTC 2 cut(s) 177, 864
AccII CGCG 1 cut(s) 215
AclWI GGATC 4 cut(s) 458, 471, 564, 600
AcsI RAATTY 1 cut(s) 1022
AcvI CACGTG 1 cut(s) 766
AcyI GRCGYC 3 cut(s) 210, 312, 588
AdeI CACNNNGTG 1 cut(s) 769
AfaI GTAC 1 cut(s) 743
AfiI CCNNNNNNNGG 3 cut(s) 494, 766, 1025
AgsI TTSAA 5 cut(s) 91, 583, 641, 667, 880
AluBI AGCT 4 cut(s) 148, 804, 883, 1035
AluI AGCT 4 cut(s) 148, 804, 883, 1035
Alw21I GWGCWC 3 cut(s) 150, 620, 942
Alw26I GTCTC 2 cut(s) 558, 809
Alw44I GTGCAC 1 cut(s) 938
AlwI GGATC 4 cut(s) 458, 471, 564, 600
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 1 cut(s) 229
ApaLI GTGCAC 1 cut(s) 938
ApoI RAATTY 1 cut(s) 1022
ArsI GACNNNNNNTTYG 2 cut(s) 200, 232
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 3 cut(s) 16, 429, 485
AsuC2I CCSGG 1 cut(s) 722
AsuHPI GGTGA 8 cut(s) 181, 340, 346, 365, 388, 811, 850, 1008
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 3 cut(s) 16, 429, 485
BaeGI GKGCMC 2 cut(s) 774, 942
BamHI GGATCC 1 cut(s) 463
BanI GGYRCC 3 cut(s) 311, 769, 964
BanII GRGCYC 1 cut(s) 150
BbrPI CACGTG 1 cut(s) 766
Bbv12I GWGCWC 3 cut(s) 150, 620, 942
BccI CCATC 4 cut(s) 200, 419, 547, 758
BceAI ACGGC 2 cut(s) 349, 904
BcnI CCSGG 1 cut(s) 722
BcoDI GTCTC 2 cut(s) 558, 809
BfoI RGCGCY 1 cut(s) 315
BglI GCCNNNNNGGC 1 cut(s) 778
BisI GCNGC 4 cut(s) 96, 213, 236, 239
BlsI GCNGC 4 cut(s) 97, 214, 237, 240
BmcAI AGTACT 1 cut(s) 743
Bme1390I CCNGG 1 cut(s) 722
Bme18I GGWCC 3 cut(s) 16, 429, 485
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 3 cut(s) 16, 429, 485
BmiI GGNNCC 8 cut(s) 313, 430, 431, 465, 528, 731, 771, 966
BmrFI CCNGG 1 cut(s) 722
BmsI GCATC 2 cut(s) 638, 669
BplI GAGNNNNNCTC 4 cut(s) 137, 169, 731, 763
BpuEI CTTGAG 1 cut(s) 980
BpuMI CCSGG 1 cut(s) 722
BsaAI YACGTR 1 cut(s) 766
BsaBI GATNNNNATC 1 cut(s) 854
BsaHI GRCGYC 3 cut(s) 210, 312, 588
BsaJI CCNNGG 3 cut(s) 12, 531, 609
BsaWI WCCGGW 2 cut(s) 482, 994
BsaXI ACNNNNNCTCC 2 cut(s) 575, 605
Bsc4I CCNNNNNNNGG 3 cut(s) 494, 766, 1025
Bse118I RCCGGY 1 cut(s) 777
Bse8I GATNNNNATC 1 cut(s) 854
BseDI CCNNGG 3 cut(s) 12, 531, 609
BseGI GGATG 2 cut(s) 814, 1087
BseJI GATNNNNATC 1 cut(s) 854
BseLI CCNNNNNNNGG 3 cut(s) 494, 766, 1025
BseMII CTCAG 7 cut(s) 123, 181, 240, 574, 593, 815, 969
BseRI GAGGAG 6 cut(s) 11, 26, 52, 155, 239, 736
BseSI GKGCMC 2 cut(s) 774, 942
Bsh1236I CGCG 1 cut(s) 215
Bsh1285I CGRYCG 3 cut(s) 290, 340, 995
BshFI GGCC 1 cut(s) 231
BshNI GGYRCC 3 cut(s) 311, 769, 964
BsiEI CGRYCG 3 cut(s) 290, 340, 995
BsiHKAI GWGCWC 3 cut(s) 150, 620, 942
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 6 cut(s) 117, 483, 721, 778, 908, 995
BslFI GGGAC 4 cut(s) 118, 283, 415, 560
BslI CCNNNNNNNGG 3 cut(s) 494, 766, 1025
BsmAI GTCTC 2 cut(s) 558, 809
BsmBI CGTCTC 2 cut(s) 558, 809
BsmFI GGGAC 4 cut(s) 118, 283, 415, 560
BsnI GGCC 1 cut(s) 231
BsoBI CYCGRG 1 cut(s) 143
Bsp1286I GDGCHC 4 cut(s) 150, 620, 774, 942
Bsp143I GATC 6 cut(s) 287, 370, 463, 544, 556, 605
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 7 cut(s) 122, 180, 239, 573, 594, 816, 970
BspFNI CGCG 1 cut(s) 215
BspLI GGNNCC 8 cut(s) 313, 430, 431, 465, 528, 731, 771, 966
BspPI GGATC 4 cut(s) 458, 471, 564, 600
BspT107I GGYRCC 3 cut(s) 311, 769, 964
BsrBI CCGCTC 2 cut(s) 177, 864
BsrFI RCCGGY 1 cut(s) 777
BssAI RCCGGY 1 cut(s) 777
BssECI CCNNGG 3 cut(s) 12, 531, 609
BssMI GATC 6 cut(s) 287, 370, 463, 544, 556, 605
BssNI GRCGYC 3 cut(s) 210, 312, 588
BssT1I CCWWGG 3 cut(s) 12, 531, 609
Bst4CI ACNGT 6 cut(s) 352, 400, 569, 688, 820, 1009
Bst6I CTCTTC 2 cut(s) 56, 92
BstACI GRCGYC 3 cut(s) 210, 312, 588
BstBAI YACGTR 1 cut(s) 766
BstC8I GCNNGC 3 cut(s) 150, 233, 779
BstDEI CTNAG 7 cut(s) 109, 167, 226, 560, 602, 824, 978
BstF5I GGATG 2 cut(s) 814, 1087
BstFNI CGCG 1 cut(s) 215
BstH2I RGCGCY 1 cut(s) 315
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 6 cut(s) 290, 373, 466, 547, 559, 608
BstMAI GTCTC 2 cut(s) 558, 809
BstMBI GATC 6 cut(s) 287, 370, 463, 544, 556, 605
BstMCI CGRYCG 3 cut(s) 290, 340, 995
BstMWI GCNNNNNNNGC 4 cut(s) 218, 320, 778, 937
BstNSI RCATGY 1 cut(s) 1087
BstSCI CCNGG 1 cut(s) 720
BstSLI GKGCMC 2 cut(s) 774, 942
BstUI CGCG 1 cut(s) 215
BstX2I RGATCY 3 cut(s) 463, 556, 605
BstYI RGATCY 3 cut(s) 463, 556, 605
BsuRI GGCC 1 cut(s) 231
BtsCI GGATG 2 cut(s) 814, 1087
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 1 cut(s) 402
Cac8I GCNNGC 3 cut(s) 150, 233, 779
CfoI GCGC 1 cut(s) 314
Cfr10I RCCGGY 1 cut(s) 777
Cfr13I GGNCC 3 cut(s) 16, 429, 485
CseI GACGC 2 cut(s) 218, 596
Csp6I GTAC 1 cut(s) 742
CviAII CATG 4 cut(s) 130, 625, 653, 1084
CviQI GTAC 1 cut(s) 742
DdeI CTNAG 7 cut(s) 109, 167, 226, 560, 602, 824, 978
DinI GGCGCC 1 cut(s) 313
DpnI GATC 6 cut(s) 289, 372, 465, 546, 558, 607
DpnII GATC 6 cut(s) 287, 370, 463, 544, 556, 605
DraIII CACNNNGTG 1 cut(s) 769
DrdI GACNNNNNNGTC 1 cut(s) 572
DseDI GACNNNNNNGTC 1 cut(s) 572
Eam1104I CTCTTC 2 cut(s) 56, 92
EarI CTCTTC 2 cut(s) 56, 92
EciI GGCGGA 2 cut(s) 55, 583
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 3 cut(s) 12, 531, 609
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 3 cut(s) 16, 429, 485
Eco53kI GAGCTC 1 cut(s) 148
Eco72I CACGTG 1 cut(s) 766
Eco88I CYCGRG 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 148
EcoO109I RGGNCCY 2 cut(s) 16, 429
EcoT14I CCWWGG 3 cut(s) 12, 531, 609
EcoT22I ATGCAT 1 cut(s) 1089
EcoT38I GRGCYC 1 cut(s) 150
EgeI GGCGCC 1 cut(s) 313
EheI GGCGCC 1 cut(s) 313
ErhI CCWWGG 3 cut(s) 12, 531, 609
Esp3I CGTCTC 2 cut(s) 558, 809
FaeI CATG 4 cut(s) 133, 628, 656, 1087
FaiI YATR 6 cut(s) 131, 626, 654, 935, 1085, 1093
FaqI GGGAC 4 cut(s) 118, 283, 415, 560
FatI CATG 4 cut(s) 129, 624, 652, 1083
FauI CCCGC 3 cut(s) 164, 182, 869
Fnu4HI GCNGC 4 cut(s) 96, 213, 236, 239
FokI GGATG 2 cut(s) 821, 1074
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 4 cut(s) 96, 213, 236, 239
GlaI GCGC 1 cut(s) 313
GluI GCNGC 4 cut(s) 96, 213, 236, 239
HaeII RGCGCY 1 cut(s) 315
HaeIII GGCC 1 cut(s) 231
HapII CCGG 6 cut(s) 117, 483, 721, 778, 908, 995
HgaI GACGC 2 cut(s) 218, 596
HhaI GCGC 1 cut(s) 314
Hin1I GRCGYC 3 cut(s) 210, 312, 588
Hin1II CATG 4 cut(s) 133, 628, 656, 1087
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HinfI GANTC 3 cut(s) 113, 447, 511
HpaII CCGG 6 cut(s) 117, 483, 721, 778, 908, 995
HphI GGTGA 8 cut(s) 181, 340, 346, 365, 388, 811, 850, 1008
Hpy166II GTNNAC 2 cut(s) 916, 940
Hpy188III TCNNGA 5 cut(s) 638, 673, 727, 877, 959
Hpy8I GTNNAC 2 cut(s) 916, 940
Hpy99I CGWCG 2 cut(s) 212, 590
HpyAV CCTTC 3 cut(s) 41, 192, 589
HpyCH4III ACNGT 6 cut(s) 352, 400, 569, 688, 820, 1009
HpyCH4IV ACGT 3 cut(s) 393, 573, 765
HpyCH4V TGCA 3 cut(s) 200, 940, 1087
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 320, 778, 937
HpyF3I CTNAG 7 cut(s) 109, 167, 226, 560, 602, 824, 978
HpySE526I ACGT 3 cut(s) 393, 573, 765
Hsp92I GRCGYC 3 cut(s) 210, 312, 588
Hsp92II CATG 4 cut(s) 133, 628, 656, 1087
HspAI GCGC 1 cut(s) 312
KasI GGCGCC 1 cut(s) 311
KflI GGGWCCC 1 cut(s) 429
KroI GCCGGC 1 cut(s) 777
KroNI GCCGGC 1 cut(s) 779
Kzo9I GATC 6 cut(s) 287, 370, 463, 544, 556, 605
LmnI GCTCC 4 cut(s) 532, 700, 869, 1040
LweI GCATC 2 cut(s) 638, 669
MaeII ACGT 3 cut(s) 393, 573, 765
MaeIII GTNAC 7 cut(s) 352, 394, 400, 569, 1003, 1028, 1061
MalI GATC 6 cut(s) 289, 372, 465, 546, 558, 607
MbiI CCGCTC 2 cut(s) 177, 864
MboI GATC 6 cut(s) 287, 370, 463, 544, 556, 605
MboII GAAGA 4 cut(s) 43, 79, 655, 745
MflI RGATCY 3 cut(s) 463, 556, 605
MhlI GDGCHC 4 cut(s) 150, 620, 774, 942
MluCI AATT 4 cut(s) 414, 438, 647, 1022
Mly113I GGCGCC 1 cut(s) 312
MmeI TCCRAC 1 cut(s) 360
Mph1103I ATGCAT 1 cut(s) 1089
MroNI GCCGGC 1 cut(s) 777
MslI CAYNNNNRTG 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 6 cut(s) 117, 483, 721, 778, 908, 995
MspR9I CCNGG 1 cut(s) 722
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 4 cut(s) 218, 320, 778, 937
NaeI GCCGGC 1 cut(s) 779
NarI GGCGCC 1 cut(s) 312
NciI CCSGG 1 cut(s) 722
NdeII GATC 6 cut(s) 287, 370, 463, 544, 556, 605
NgoMIV GCCGGC 1 cut(s) 777
NlaIII CATG 4 cut(s) 133, 628, 656, 1087
NlaIV GGNNCC 8 cut(s) 313, 430, 431, 465, 528, 731, 771, 966
NmuCI GTSAC 5 cut(s) 352, 394, 400, 1003, 1061
NsiI ATGCAT 1 cut(s) 1089
NspI RCATGY 1 cut(s) 1087
PaeR7I CTCGAG 1 cut(s) 143
PdiI GCCGGC 1 cut(s) 779
PfeI GAWTC 3 cut(s) 113, 447, 511
PkrI GCNGC 4 cut(s) 97, 214, 237, 240
Ple19I CGATCG 1 cut(s) 290
PluTI GGCGCC 1 cut(s) 315
PmaCI CACGTG 1 cut(s) 766
PmlI CACGTG 1 cut(s) 766
Ppu21I YACGTR 1 cut(s) 766
PpuMI RGGWCCY 2 cut(s) 16, 429
Psp124BI GAGCTC 1 cut(s) 150
Psp5II RGGWCCY 2 cut(s) 16, 429
PspCI CACGTG 1 cut(s) 766
PspN4I GGNNCC 8 cut(s) 313, 430, 431, 465, 528, 731, 771, 966
PspPI GGNCC 3 cut(s) 16, 429, 485
PspPPI RGGWCCY 2 cut(s) 16, 429
PspXI VCTCGAGB 1 cut(s) 143
PsuI RGATCY 3 cut(s) 463, 556, 605
PvuI CGATCG 1 cut(s) 290
RsaI GTAC 1 cut(s) 743
RsaNI GTAC 1 cut(s) 742
RseI CAYNNNNRTG 1 cut(s) 128
SacI GAGCTC 1 cut(s) 150
SatI GCNGC 4 cut(s) 96, 213, 236, 239
Sau3AI GATC 6 cut(s) 287, 370, 463, 544, 556, 605
Sau96I GGNCC 3 cut(s) 16, 429, 485
ScaI AGTACT 1 cut(s) 743
ScrFI CCNGG 1 cut(s) 722
SduI GDGCHC 4 cut(s) 150, 620, 774, 942
SfaNI GCATC 2 cut(s) 638, 669
SfoI GGCGCC 1 cut(s) 313
Sfr274I CTCGAG 1 cut(s) 143
SinI GGWCC 3 cut(s) 16, 429, 485
SlaI CTCGAG 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 143, 959
SmoI CTYRAG 2 cut(s) 143, 959
Sse9I AATT 4 cut(s) 414, 438, 647, 1022
SspDI GGCGCC 1 cut(s) 311
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 720
StyI CCWWGG 3 cut(s) 12, 531, 609
TaaI ACNGT 6 cut(s) 352, 400, 569, 688, 820, 1009
TaiI ACGT 3 cut(s) 396, 576, 768
TaqI TCGA 4 cut(s) 144, 420, 450, 848
TaqII GACCGA 1 cut(s) 752
TasI AATT 4 cut(s) 414, 438, 647, 1022
TatI WGTACW 1 cut(s) 741
TauI GCSGC 4 cut(s) 98, 215, 238, 241
TfiI GAWTC 3 cut(s) 113, 447, 511
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 5 cut(s) 352, 394, 400, 1003, 1061
Tsp45I GTSAC 5 cut(s) 352, 394, 400, 1003, 1061
TspDTI ATGAA 3 cut(s) 641, 731, 866
TspGWI ACGGA 3 cut(s) 456, 687, 957
TspRI CASTG 1 cut(s) 409
VneI GTGCAC 1 cut(s) 938
VpaK11BI GGWCC 3 cut(s) 16, 429, 485
XapI RAATTY 1 cut(s) 1022
XceI RCATGY 1 cut(s) 1087
XhoI CTCGAG 1 cut(s) 143
ZrmI AGTACT 1 cut(s) 743
Zsp2I ATGCAT 1 cut(s) 1089
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.