Rw4G032740

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000614
Physical Location & Seq
Forward (+)
59817797 .. 59818846
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G032740.1

Sequence Viewer

Length: 1050 bp
ATGGCGTCGCCGTCGATCACCGCCCTCTCTCTCCTCCTCATCTCCCTCCTCTCTCTCTCCTCCGCTCTCCCCTCCCGCAGCATCCTCAACGCCGCCGAAGTACTCTCCGATTCCGGCTACCTCTCCATGGCTCTCACTCTCGAGGTCGTCTCTCAGTCCCTCGTCCCCAAGTCCCCGTCGCTTACCATCTTTGCGCCGCCGGACTCCGCCTTCAAGCGAGCCGGCCAGCCCTCCCTCTCTCTCCTCCAATTCCACTTCGCCCCTCTCGCTCTCCCCCTCCAAACCCTAAAATCGCTCCCCGCCGGCACCAAGATCCCGACTCTCCTCTCCGGCAGCTCCCTCGTCGTCACCTCGCCTCCTTCCGGCACTGGACTTTCTCTCAACGGCGTCAGGGTCACAACCGCCGCCTCTCCGATCTACGACGACGGGTTCCTGATCATTCTCGGAGTCGAGGACTTCTTCGACCCGAACTTCCATGCTCCCGCCCCGACCCGAATCCCGGTTTCGGATCCGATGTGCGGGTCGCCTTCGTCGAACGGTACAAGCACGATCGGGTTTCCGGCGGCTTCTTGGTTTGAAGGAGCCAAAGGCGTGATGAGGTCCAATGGATACAGAGTGATGGCTTCGTTTCTTGATCTGCAGCTCATGGGGTTCAAGAACCCTCCGAGTTCGTTGACCGTCTTTGCTCCGGTTGACCAGGCGGTGGAGAATCCTCTACTGGACCCGTCGATCTTTCTACGACACGTCGTTCCTTGCCGGCTTGTTTGGTCCGATTTGGTGAATTTCAGTGAAGGGACGGTGCTTCCAACCTATATGGCCGGGTTCACCATCAGAATCTCAAGAAACGGCGACGTTTTGCTGCTCAACGAAGTTCCGGTGTACTATGCAAACATGTATTACAGCGACTCCGTTGTGGTTCACGGTCTCCAGGAGAGTCTTGTAATGCCGGCAGAGGCGCAAGAAGAGGCTGCAGAGGAGTCTTCACAGGAAGAAGCTGGGAGTGAAACCAGTGATGATTCACTTCTAATGGATGATGACAGTGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

349

Amino Acids

37.08

Weight (kDa)

4.38

Isoelectric Point (pI)

57.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 220 - 313 2.4e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 305
AccB7I CCANNNNNTGG 1 cut(s) 703
AccBSI CCGCTC 1 cut(s) 65
AclWI GGATC 3 cut(s) 307, 503, 516
AcoI YGGCCR 2 cut(s) 223, 816
AcsI RAATTY 2 cut(s) 781, 1043
AcyI GRCGYC 2 cut(s) 5, 387
AfaI GTAC 3 cut(s) 102, 541, 881
AfiI CCNNNNNNNGG 6 cut(s) 127, 362, 499, 505, 518, 703
AflIII ACRYGT 2 cut(s) 742, 891
AgsI TTSAA 3 cut(s) 214, 578, 655
AjiI CACGTC 1 cut(s) 745
AjnI CCWGG 2 cut(s) 696, 927
AluBI AGCT 3 cut(s) 336, 643, 995
AluI AGCT 3 cut(s) 336, 643, 995
Alw26I GTCTC 2 cut(s) 154, 929
AlwI GGATC 3 cut(s) 307, 503, 516
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 2 cut(s) 223, 816
ApeKI GCWGC 5 cut(s) 78, 333, 640, 859, 968
ApoI RAATTY 2 cut(s) 781, 1043
AspLEI GCGC 2 cut(s) 196, 958
AspS9I GGNCC 3 cut(s) 600, 721, 768
AsuC2I CCSGG 2 cut(s) 500, 820
AsuHPI GGTGA 4 cut(s) 10, 340, 790, 817
AvaI CYCGRG 1 cut(s) 140
AvaII GGWCC 3 cut(s) 600, 721, 768
BamHI GGATCC 1 cut(s) 508
BanI GGYRCC 1 cut(s) 305
BbsI GAAGAC 1 cut(s) 972
BbvI GCAGC 5 cut(s) 90, 345, 652, 846, 955
BccI CCATC 3 cut(s) 194, 613, 836
BceAI ACGGC 2 cut(s) 400, 862
BcgI CGANNNNNNTGC 2 cut(s) 322, 356
BciT130I CCWGG 2 cut(s) 698, 929
BciVI GTATCC 1 cut(s) 602
BclI TGATCA 1 cut(s) 435
BcnI CCSGG 2 cut(s) 500, 820
BcoDI GTCTC 2 cut(s) 154, 929
BfmI CTRYAG 2 cut(s) 638, 969
BfuI GTATCC 1 cut(s) 602
BisI GCNGC 9 cut(s) 79, 93, 197, 334, 405, 564, 641, 860, 969
BlsI GCNGC 9 cut(s) 80, 94, 198, 335, 406, 565, 642, 861, 970
BmcAI AGTACT 1 cut(s) 102
Bme1390I CCNGG 4 cut(s) 500, 698, 820, 929
Bme18I GGWCC 3 cut(s) 600, 721, 768
BmeT110I CYCGRG 1 cut(s) 140
BmgBI CACGTC 1 cut(s) 745
BmgT120I GGNCC 3 cut(s) 600, 721, 768
BmiI GGNNCC 5 cut(s) 307, 431, 510, 583, 723
BmrFI CCNGG 4 cut(s) 500, 698, 820, 929
BmsI GCATC 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 972
BplI GAGNNNNNCTC 2 cut(s) 134, 166
BpmI CTGGAG 1 cut(s) 911
BpuEI CTTGAG 1 cut(s) 823
BpuMI CCSGG 2 cut(s) 500, 820
BsaHI GRCGYC 2 cut(s) 5, 387
BsaI GGTCTC 1 cut(s) 929
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 2 cut(s) 688, 874
BsaXI ACNNNNNCTCC 4 cut(s) 340, 370, 890, 920
Bsc4I CCNNNNNNNGG 6 cut(s) 127, 362, 499, 505, 518, 703
Bse118I RCCGGY 4 cut(s) 221, 302, 756, 946
Bse1I ACTGG 3 cut(s) 373, 723, 1008
BseBI CCWGG 2 cut(s) 698, 929
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 2 cut(s) 81, 1036
BseLI CCNNNNNNNGG 6 cut(s) 127, 362, 499, 505, 518, 703
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 3 cut(s) 373, 723, 1008
BseRI GAGGAG 7 cut(s) 23, 26, 38, 49, 233, 314, 989
BseXI GCAGC 5 cut(s) 90, 345, 652, 846, 955
BseYI CCCAGC 1 cut(s) 995
Bsh1285I CGRYCG 1 cut(s) 552
BshFI GGCC 2 cut(s) 225, 818
BshNI GGYRCC 1 cut(s) 305
BsiEI CGRYCG 1 cut(s) 552
BsiHKCI CYCGRG 1 cut(s) 140
BslFI GGGAC 4 cut(s) 142, 149, 157, 808
BslI CCNNNNNNNGG 6 cut(s) 127, 362, 499, 505, 518, 703
BsmAI GTCTC 2 cut(s) 154, 929
BsmBI CGTCTC 1 cut(s) 154
BsmFI GGGAC 4 cut(s) 142, 149, 157, 808
BsnI GGCC 2 cut(s) 225, 818
Bso31I GGTCTC 1 cut(s) 929
BsoBI CYCGRG 1 cut(s) 140
Bsp143I GATC 8 cut(s) 15, 312, 414, 435, 508, 549, 634, 729
Bsp19I CCATGG 1 cut(s) 126
BspANI GGCC 2 cut(s) 225, 818
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 5 cut(s) 307, 431, 510, 583, 723
BspMAI CTGCAG 2 cut(s) 642, 973
BspPI GGATC 3 cut(s) 307, 503, 516
BspT107I GGYRCC 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 929
BsrBI CCGCTC 1 cut(s) 65
BsrFI RCCGGY 4 cut(s) 221, 302, 756, 946
BsrI ACTGG 3 cut(s) 373, 723, 1008
BssAI RCCGGY 4 cut(s) 221, 302, 756, 946
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 8 cut(s) 15, 312, 414, 435, 508, 549, 634, 729
BssNI GRCGYC 2 cut(s) 5, 387
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 2 cut(s) 698, 929
Bst4CI ACNGT 5 cut(s) 539, 679, 799, 923, 1040
Bst6I CTCTTC 1 cut(s) 957
BstACI GRCGYC 2 cut(s) 5, 387
BstC8I GCNNGC 6 cut(s) 219, 223, 227, 304, 758, 948
BstDEI CTNAG 1 cut(s) 153
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 2 cut(s) 81, 1036
BstHHI GCGC 2 cut(s) 196, 958
BstKTI GATC 8 cut(s) 18, 315, 417, 438, 511, 552, 637, 732
BstMAI GTCTC 2 cut(s) 154, 929
BstMBI GATC 8 cut(s) 15, 312, 414, 435, 508, 549, 634, 729
BstMCI CGRYCG 1 cut(s) 552
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 2 cut(s) 698, 929
BstNSI RCATGY 1 cut(s) 895
BstSCI CCNGG 4 cut(s) 498, 696, 818, 927
BstSFI CTRYAG 2 cut(s) 638, 969
BstV1I GCAGC 5 cut(s) 90, 345, 652, 846, 955
BstV2I GAAGAC 1 cut(s) 972
BstX2I RGATCY 2 cut(s) 312, 508
BstYI RGATCY 2 cut(s) 312, 508
BsuI GTATCC 1 cut(s) 602
BsuRI GGCC 2 cut(s) 225, 818
BtgI CCRYGG 1 cut(s) 126
BtrI CACGTC 1 cut(s) 745
BtsCI GGATG 2 cut(s) 81, 1036
BtsIMutI CAGTG 4 cut(s) 366, 793, 1015, 1045
Cac8I GCNNGC 6 cut(s) 219, 223, 227, 304, 758, 948
CfoI GCGC 2 cut(s) 196, 958
Cfr10I RCCGGY 4 cut(s) 221, 302, 756, 946
Cfr13I GGNCC 3 cut(s) 600, 721, 768
CseI GACGC 1 cut(s) 376
Csp6I GTAC 3 cut(s) 101, 540, 880
CviAII CATG 4 cut(s) 127, 476, 646, 892
CviQI GTAC 3 cut(s) 101, 540, 880
DdeI CTNAG 1 cut(s) 153
DpnI GATC 8 cut(s) 17, 314, 416, 437, 510, 551, 636, 731
DpnII GATC 8 cut(s) 15, 312, 414, 435, 508, 549, 634, 729
EaeI YGGCCR 2 cut(s) 223, 816
Eam1104I CTCTTC 1 cut(s) 957
EarI CTCTTC 1 cut(s) 957
EciI GGCGGA 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 929
Eco47I GGWCC 3 cut(s) 600, 721, 768
Eco88I CYCGRG 1 cut(s) 140
EcoRII CCWGG 2 cut(s) 696, 927
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
Esp3I CGTCTC 1 cut(s) 154
FaeI CATG 4 cut(s) 130, 479, 649, 895
FaiI YATR 7 cut(s) 128, 477, 647, 813, 815, 885, 893
FaqI GGGAC 4 cut(s) 142, 149, 157, 808
FatI CATG 4 cut(s) 126, 475, 645, 891
FauI CCCGC 4 cut(s) 83, 307, 490, 512
FbaI TGATCA 1 cut(s) 435
Fnu4HI GCNGC 9 cut(s) 79, 93, 197, 334, 405, 564, 641, 860, 969
FokI GGATG 2 cut(s) 68, 1043
Fsp4HI GCNGC 9 cut(s) 79, 93, 197, 334, 405, 564, 641, 860, 969
GlaI GCGC 2 cut(s) 195, 957
GluI GCNGC 9 cut(s) 79, 93, 197, 334, 405, 564, 641, 860, 969
GsaI CCCAGC 1 cut(s) 999
GsuI CTGGAG 1 cut(s) 911
HaeIII GGCC 2 cut(s) 225, 818
HgaI GACGC 1 cut(s) 376
HhaI GCGC 2 cut(s) 196, 958
Hin1I GRCGYC 2 cut(s) 5, 387
Hin1II CATG 4 cut(s) 130, 479, 649, 895
Hin6I GCGC 2 cut(s) 194, 956
HinP1I GCGC 2 cut(s) 194, 956
HincII GTYRAC 2 cut(s) 675, 694
HindII GTYRAC 2 cut(s) 675, 694
HphI GGTGA 4 cut(s) 10, 340, 790, 817
Hpy166II GTNNAC 5 cut(s) 675, 694, 825, 880, 919
Hpy188I TCNGA 8 cut(s) 109, 414, 446, 508, 513, 666, 772, 833
Hpy188III TCNNGA 6 cut(s) 140, 316, 433, 632, 655, 840
Hpy8I GTNNAC 5 cut(s) 675, 694, 825, 880, 919
HpyAV CCTTC 5 cut(s) 220, 369, 537, 572, 785
HpyCH4III ACNGT 5 cut(s) 539, 679, 799, 923, 1040
HpyCH4IV ACGT 2 cut(s) 744, 852
HpyCH4V TGCA 3 cut(s) 640, 887, 971
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 2 cut(s) 744, 852
Hsp92I GRCGYC 2 cut(s) 5, 387
Hsp92II CATG 4 cut(s) 130, 479, 649, 895
HspAI GCGC 2 cut(s) 194, 956
KroI GCCGGC 4 cut(s) 221, 302, 756, 946
KroNI GCCGGC 4 cut(s) 223, 304, 758, 948
Ksp22I TGATCA 1 cut(s) 435
Kzo9I GATC 8 cut(s) 15, 312, 414, 435, 508, 549, 634, 729
LmnI GCTCC 5 cut(s) 300, 341, 484, 581, 691
Lsp1109I GCAGC 5 cut(s) 90, 345, 652, 846, 955
LweI GCATC 1 cut(s) 90
MaeII ACGT 2 cut(s) 744, 852
MaeIII GTNAC 2 cut(s) 346, 394
MalI GATC 8 cut(s) 17, 314, 416, 437, 510, 551, 636, 731
MbiI CCGCTC 1 cut(s) 65
MboI GATC 8 cut(s) 15, 312, 414, 435, 508, 549, 634, 729
MboII GAAGA 4 cut(s) 451, 972, 974, 1001
MflI RGATCY 2 cut(s) 312, 508
MluCI AATT 3 cut(s) 248, 781, 1043
MlyI GAGTC 6 cut(s) 197, 313, 456, 899, 943, 986
MmeI TCCRAC 1 cut(s) 830
MroNI GCCGGC 4 cut(s) 221, 302, 756, 946
MspR9I CCNGG 4 cut(s) 500, 698, 820, 929
MvaI CCWGG 2 cut(s) 698, 929
MwoI GCNNNNNNNGC 1 cut(s) 266
NaeI GCCGGC 4 cut(s) 223, 304, 758, 948
NciI CCSGG 2 cut(s) 500, 820
NcoI CCATGG 1 cut(s) 126
NdeII GATC 8 cut(s) 15, 312, 414, 435, 508, 549, 634, 729
NgoMIV GCCGGC 4 cut(s) 221, 302, 756, 946
NlaIII CATG 4 cut(s) 130, 479, 649, 895
NlaIV GGNNCC 5 cut(s) 307, 431, 510, 583, 723
NmuCI GTSAC 2 cut(s) 346, 394
NspI RCATGY 1 cut(s) 895
PaeR7I CTCGAG 1 cut(s) 140
PciI ACATGT 1 cut(s) 891
PcsI WCGNNNNNNNCGW 1 cut(s) 530
PdiI GCCGGC 4 cut(s) 223, 304, 758, 948
PfeI GAWTC 5 cut(s) 110, 495, 709, 834, 1016
PflMI CCANNNNNTGG 1 cut(s) 703
PfoI TCCNGGA 1 cut(s) 927
PkrI GCNGC 9 cut(s) 80, 94, 198, 335, 406, 565, 642, 861, 970
Ple19I CGATCG 1 cut(s) 552
PleI GAGTC 6 cut(s) 197, 313, 455, 899, 942, 985
PpsI GAGTC 6 cut(s) 197, 313, 455, 899, 942, 985
PscI ACATGT 1 cut(s) 891
Psp6I CCWGG 2 cut(s) 696, 927
PspFI CCCAGC 1 cut(s) 995
PspGI CCWGG 2 cut(s) 696, 927
PspN4I GGNNCC 5 cut(s) 307, 431, 510, 583, 723
PspPI GGNCC 3 cut(s) 600, 721, 768
PstI CTGCAG 2 cut(s) 642, 973
PsuI RGATCY 2 cut(s) 312, 508
PvuI CGATCG 1 cut(s) 552
RsaI GTAC 3 cut(s) 102, 541, 881
RsaNI GTAC 3 cut(s) 101, 540, 880
SatI GCNGC 9 cut(s) 79, 93, 197, 334, 405, 564, 641, 860, 969
Sau3AI GATC 8 cut(s) 15, 312, 414, 435, 508, 549, 634, 729
Sau96I GGNCC 3 cut(s) 600, 721, 768
ScaI AGTACT 1 cut(s) 102
SchI GAGTC 6 cut(s) 197, 313, 456, 899, 943, 986
ScrFI CCNGG 4 cut(s) 500, 698, 820, 929
SfaNI GCATC 1 cut(s) 90
SfcI CTRYAG 2 cut(s) 638, 969
Sfr274I CTCGAG 1 cut(s) 140
SinI GGWCC 3 cut(s) 600, 721, 768
SlaI CTCGAG 1 cut(s) 140
SmlI CTYRAG 2 cut(s) 140, 838
SmoI CTYRAG 2 cut(s) 140, 838
Sse9I AATT 3 cut(s) 248, 781, 1043
StyD4I CCNGG 4 cut(s) 498, 696, 818, 927
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 5 cut(s) 539, 679, 799, 923, 1040
TaiI ACGT 2 cut(s) 747, 855
TaqI TCGA 6 cut(s) 14, 141, 450, 462, 533, 728
TasI AATT 3 cut(s) 248, 781, 1043
TatI WGTACW 2 cut(s) 100, 879
TauI GCSGC 4 cut(s) 95, 199, 407, 566
TfiI GAWTC 5 cut(s) 110, 495, 709, 834, 1016
TscAI CASTG 4 cut(s) 373, 793, 1015, 1045
TseFI GTSAC 2 cut(s) 346, 394
TseI GCWGC 5 cut(s) 78, 333, 640, 859, 968
Tsp45I GTSAC 2 cut(s) 346, 394
TspGWI ACGGA 1 cut(s) 898
TspRI CASTG 4 cut(s) 373, 793, 1015, 1045
Van91I CCANNNNNTGG 1 cut(s) 703
VpaK11BI GGWCC 3 cut(s) 600, 721, 768
XapI RAATTY 2 cut(s) 781, 1043
XceI RCATGY 1 cut(s) 895
XhoI CTCGAG 1 cut(s) 140
ZrmI AGTACT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.