Rh1CG172800

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000614
Physical Location & Seq
Forward (+)
38216566 .. 38217089
524 bp
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UTR
Exon/CDS
Intron
Rh1CG172800.1

Sequence Viewer

Length: 468 bp
ATGGGGTCGATGATGATATACACCATCGATCGGTTCTTTAACTTGTCTTTCTTGGAGGCTGATGAAGCTTCGATGCCGGCTTCGATTGCTGGAGTTTCAGGTCAGCCACACCCGCCTTTCGGGTCGGTTGCAAATCTGCTTGGGTCTGAAGGTTGTTCGATCATGGATGTGTTTCTTGATGCCCAAATGATTGGGTTCAACCATAATACGACGCTAATGGTTTTCATTGCCGTCAAAGACTACTCAAGGAACAACTCCGATTACTCGGTGATTTTCAGGGAGCACGTGGTCCAGAAGCTGCTGCCGACTTTTGAAGAAGTGCCCGATCAGGACCTGTACCAAAGCTTCTTTCTGGTTGTTGATGGCCTCAATCGCTTGCTGACGTCACAGCAGCAAATGGTGAGGCAAGAACAAGACCCAGTTGATCAAGAAGATGGTGGCGCTGATTTCACTGATGGGTCTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

155

Amino Acids

17.27

Weight (kDa)

4.2

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40940
fragaria_vesca FvH4_2g32760 FvH4_4g32150 FvH4_4g32590 FvH4_6g20740 FvH4_6g53540 FvH4_7g12190
malus_domestica MD09G1010600.v1.1 MD13G1026900.v1.1 MD13G1028200.v1.1 MD16G1030000.v1.1 MD16G1031100.v1.1
prunus_persica Prupe.1G322000_v2.0.a1 Prupe.3G306500_v2.0.a1
pyrus_communis pycom01g06180 pycom04g10020 pycom111g00880 pycom13g02560 pycom13g02660 pycom16g02710
rosa_chinensis RchiOBHm_Chr2g0175581 RchiOBHm_Chr4g0440841
rosa_laevigata RLG00000006133 RLG00000006134 RLG00000006144 RLG00000008208 RLG00000019874 RLG00000022341 RLG00000032925 RLG00000036410
rosa_multiflora Rmu_co8113152.1_g000001 Rmu_sc0000424.1_g000015 Rmu_sc0000424.1_g000029 Rmu_sc0000424.1_g000030 Rmu_sc0000424.1_g000031 Rmu_sc0000998.1_g000023 Rmu_sc0005054.1_g000012 Rmu_sc0009386.1_g000004 Rmu_sc0013970.1_g000002 Rmu_sc0027146.1_g000001 Rmu_ssc0000175.1_g000015 Rmu_ssc0000386.1_g000026
rosa_roxburghii Rroxscaffold_2G00077200 Rroxscaffold_5G00381670 Rroxscaffold_5G00381840 Rroxscaffold_5G00381850
rosa_rugosa Rorug03G0261000 Rorug04G0120500 Rorug04G0328900 Rorug04G0329900 Rorug04G0330000 Rorug05G0525900
rosa_samantha Rh1AG187300 Rh1BG153500 Rh1CG172800 Rh2BG270100 Rh2BG676400 Rh2CG639600 Rh2DG690400 Rh3BG272200 Rh4AG380600 Rh4AG381600 Rh4AG381700 Rh4BG393200 Rh4BG395000 Rh4BG395100 Rh4CG053800 Rh4CG194900 Rh4CG408000 Rh4CG409900 Rh4CG410000 Rh5BG280900 Rh7AG473300 Rh7BG247300 Rh7CG108400
rosa_wichuraiana Rw2G054570 Rw4G032740 Rw4G032880 Rw4G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 386
AciI CCGC 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 168
AcvI CACGTG 1 cut(s) 286
AcyI GRCGYC 1 cut(s) 383
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 2 cut(s) 30, 119
AgsI TTSAA 2 cut(s) 199, 314
AjuI GAANNNNNNNTTGG 2 cut(s) 333, 365
AluBI AGCT 3 cut(s) 68, 298, 345
AluI AGCT 3 cut(s) 68, 298, 345
Alw21I GWGCWC 1 cut(s) 285
AlwNI CAGNNNCTG 2 cut(s) 298, 334
AoxI GGCC 1 cut(s) 364
ApeKI GCWGC 3 cut(s) 298, 301, 391
AspLEI GCGC 1 cut(s) 443
AspS9I GGNCC 2 cut(s) 289, 331
AsuHPI GGTGA 2 cut(s) 280, 412
AvaII GGWCC 2 cut(s) 289, 331
BaeGI GKGCMC 1 cut(s) 324
BarI GAAGNNNNNNTAC 2 cut(s) 329, 361
BbrPI CACGTG 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 3 cut(s) 285, 288, 403
BccI CCATC 4 cut(s) 32, 356, 428, 449
BceAI ACGGC 1 cut(s) 215
BclI TGATCA 1 cut(s) 424
BfoI RGCGCY 1 cut(s) 444
BisI GCNGC 3 cut(s) 299, 302, 392
BlsI GCNGC 3 cut(s) 300, 303, 393
Bme18I GGWCC 2 cut(s) 289, 331
BmgT120I GGNCC 2 cut(s) 289, 331
BmrI ACTGGG 1 cut(s) 413
BmsI GCATC 2 cut(s) 63, 169
BmuI ACTGGG 1 cut(s) 413
BpmI CTGGAG 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 229
Bsa29I ATCGAT 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 286
BsaHI GRCGYC 1 cut(s) 383
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 119
Bse118I RCCGGY 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 419
Bse3DI GCAATG 1 cut(s) 225
BseCI ATCGAT 1 cut(s) 27
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 30, 119
BseMI GCAATG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 419
BseSI GKGCMC 1 cut(s) 324
BseXI GCAGC 3 cut(s) 285, 288, 403
Bsh1285I CGRYCG 1 cut(s) 31
BshFI GGCC 1 cut(s) 366
BshVI ATCGAT 1 cut(s) 27
BsiEI CGRYCG 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 1 cut(s) 77
BslI CCNNNNNNNGG 2 cut(s) 30, 119
BsnI GGCC 1 cut(s) 366
Bsp1286I GDGCHC 2 cut(s) 285, 324
Bsp143I GATC 4 cut(s) 28, 159, 325, 424
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 366
BspDI ATCGAT 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 225
BsrFI RCCGGY 1 cut(s) 76
BsrI ACTGG 1 cut(s) 419
BssAI RCCGGY 1 cut(s) 76
BssMI GATC 4 cut(s) 28, 159, 325, 424
BssNI GRCGYC 1 cut(s) 383
BstACI GRCGYC 1 cut(s) 383
BstBAI YACGTR 1 cut(s) 286
BstC8I GCNNGC 2 cut(s) 78, 377
BstDEI CTNAG 1 cut(s) 462
BstF5I GGATG 1 cut(s) 172
BstH2I RGCGCY 1 cut(s) 444
BstHHI GCGC 1 cut(s) 443
BstKTI GATC 4 cut(s) 31, 162, 328, 427
BstMBI GATC 4 cut(s) 28, 159, 325, 424
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 4 cut(s) 65, 86, 112, 372
BstSLI GKGCMC 1 cut(s) 324
BstV1I GCAGC 3 cut(s) 285, 288, 403
BstXI CCANNNNNNTGG 1 cut(s) 191
Bsu15I ATCGAT 1 cut(s) 27
BsuRI GGCC 1 cut(s) 366
BsuTUI ATCGAT 1 cut(s) 27
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 450
Cac8I GCNNGC 2 cut(s) 78, 377
CaiI CAGNNNCTG 2 cut(s) 298, 334
CfoI GCGC 1 cut(s) 443
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 289, 331
ClaI ATCGAT 1 cut(s) 27
CseI GACGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 337
CviAII CATG 1 cut(s) 163
CviJI RGCY 7 cut(s) 59, 68, 80, 106, 298, 345, 366
CviKI_1 RGCY 7 cut(s) 59, 68, 80, 106, 298, 345, 366
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 1 cut(s) 462
DpnI GATC 4 cut(s) 30, 161, 327, 426
DpnII GATC 4 cut(s) 28, 159, 325, 424
Eco47I GGWCC 2 cut(s) 289, 331
Eco57I CTGAAG 1 cut(s) 168
Eco72I CACGTG 1 cut(s) 286
EcoO109I RGGNCCY 1 cut(s) 331
FaeI CATG 1 cut(s) 166
FaiI YATR 3 cut(s) 19, 164, 204
FatI CATG 1 cut(s) 162
FauI CCCGC 1 cut(s) 120
FbaI TGATCA 1 cut(s) 424
Fnu4HI GCNGC 3 cut(s) 299, 302, 392
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 3 cut(s) 299, 302, 392
GlaI GCGC 1 cut(s) 442
GluI GCNGC 3 cut(s) 299, 302, 392
GsuI CTGGAG 1 cut(s) 111
HaeII RGCGCY 1 cut(s) 444
HaeIII GGCC 1 cut(s) 366
HapII CCGG 1 cut(s) 77
HgaI GACGC 1 cut(s) 220
HhaI GCGC 1 cut(s) 443
Hin1I GRCGYC 1 cut(s) 383
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 1 cut(s) 441
HinP1I GCGC 1 cut(s) 441
HindIII AAGCTT 2 cut(s) 66, 343
HpaII CCGG 1 cut(s) 77
HphI GGTGA 2 cut(s) 280, 412
Hpy188I TCNGA 2 cut(s) 148, 259
Hpy188III TCNNGA 4 cut(s) 176, 292, 329, 428
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 1 cut(s) 143
HpyCH4IV ACGT 2 cut(s) 285, 383
HpyCH4V TGCA 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 86, 112, 372
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 2 cut(s) 285, 383
Hsp92I GRCGYC 1 cut(s) 383
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 1 cut(s) 441
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 4 cut(s) 28, 159, 325, 424
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 9 cut(s) 75, 84, 90, 262, 305, 314, 338, 347, 432
Lsp1109I GCAGC 3 cut(s) 285, 288, 403
LweI GCATC 2 cut(s) 63, 169
MaeII ACGT 2 cut(s) 285, 383
MaeIII GTNAC 1 cut(s) 384
MalI GATC 4 cut(s) 30, 161, 327, 426
MboI GATC 4 cut(s) 28, 159, 325, 424
MboII GAAGA 2 cut(s) 326, 443
MhlI GDGCHC 2 cut(s) 285, 324
MnlI CCTC 3 cut(s) 49, 377, 396
MroNI GCCGGC 1 cut(s) 76
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 167
MspI CCGG 1 cut(s) 77
MwoI GCNNNNNNNGC 4 cut(s) 65, 86, 112, 372
NaeI GCCGGC 1 cut(s) 78
NdeII GATC 4 cut(s) 28, 159, 325, 424
NgoMIV GCCGGC 1 cut(s) 76
NlaIII CATG 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 384
PdiI GCCGGC 1 cut(s) 78
PkrI GCNGC 3 cut(s) 300, 303, 393
Ple19I CGATCG 1 cut(s) 31
PmaCI CACGTG 1 cut(s) 286
PmlI CACGTG 1 cut(s) 286
Ppu21I YACGTR 1 cut(s) 286
PpuMI RGGWCCY 1 cut(s) 331
Psp5II RGGWCCY 1 cut(s) 331
PspCI CACGTG 1 cut(s) 286
PspPI GGNCC 2 cut(s) 289, 331
PspPPI RGGWCCY 1 cut(s) 331
PstNI CAGNNNCTG 2 cut(s) 298, 334
PvuI CGATCG 1 cut(s) 31
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 3 cut(s) 299, 302, 392
Sau3AI GATC 4 cut(s) 28, 159, 325, 424
Sau96I GGNCC 2 cut(s) 289, 331
SduI GDGCHC 2 cut(s) 285, 324
SetI ASST 8 cut(s) 70, 103, 154, 288, 300, 336, 347, 386
SfaNI GCATC 2 cut(s) 63, 169
SinI GGWCC 2 cut(s) 289, 331
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
SsiI CCGC 1 cut(s) 113
TaiI ACGT 2 cut(s) 288, 386
TaqI TCGA 5 cut(s) 8, 27, 71, 83, 158
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 1 cut(s) 384
TseI GCWGC 3 cut(s) 298, 301, 391
Tsp45I GTSAC 1 cut(s) 384
TspDTI ATGAA 2 cut(s) 78, 214
TspRI CASTG 1 cut(s) 457
VpaK11BI GGWCC 2 cut(s) 289, 331
ZraI GACGTC 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.