FvH4_4g32150

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
30925040 .. 30926056
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32150.t1

Sequence Viewer

Length: 1017 bp
ATGGCGTCGCCGTCGATCACCGTTTTCTCTCTCCTCCTCCTCCTCCTCCCTCTCTCCTCCGCCCTCCCCTCCCACAGCGTCCTCAACGCCGCCGAGATCCTCGCCGATTCCGGCTTCCTCTCCATGGCTCTCACTCTCGAGGTCGTCTCCCAGTCCCTCGTCCCCAAATCGCCGTCTCTCACCATCTTCGCGCCGCCGGACTCCGCCTTCAAGCGCGCCGGCCAGCCCTCCCTCTCCCTCCTTCAACTCCACTTCGCGCCTCTCGCTCTCCCCCTCCAAACCCTAACCTCCCTCCCCGCCGGTACCAAAATCCCGACGCTCCAGTCCGGGAACTCACTCGTCGTCACCTCGCCGCCGTCCGGCGCCGAAATCTCCCTCAACGGCGTCCGCGTCACCACCGCCGCCTCGCCGATCTACGACGACGGCTTCCTCATCATCCTCGGAGTCGAGGACTTCTTCGACCCGAAGTTTCAGTTCCAGGCGGCCGCCCCGCCCCGAATTCCTGCTCCGGGTCAGAAATGCGGGTCGGATTCTTCAAACGGTACCGGGTTTCCGGGGGCTTCTTGGTTCCAAGGAGCCAAAGGCGCGATGAGGTCCAACGGATACACCGTGATGGCTTCGTTGCTTGATCTGCAACTCATGGGGTTCAAGAACCCTCCGACTTCGTTGACCGTCTTTGCTCCCGTTGACCAATCGGTGGAGAATCCTCTGCTGGACCCCTCGGTCTTTCTACGACACGTCGTTCCCTGTCGTCTGGCCTGGTCCGATCTGGTGAATCTCACCGAAGGGACGGCGCTTCCTACCTACCTGGACGGCTTCACCATCAGAATCTCCAGATCCGGCGACGTTTTGCTGCTCAACGGTGCTCCGGTGTACTTTGCCAACATGTACTACGGCGATTCCGTCGTGGTTCACGGCCTTCAGGAGAGCCTTGTGATGCCGGAAGAGGCAGCTGCAGGTGAGTCTTCACCGGAAGAAGGTGGGAGTGACTCACTGGATGACGAGAGTGAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

339

Amino Acids

35.51

Weight (kDa)

4.44

Isoelectric Point (pI)

55.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 216 - 311 4.3e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000614)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 947
AasI GACNNNNNNGTC 2 cut(s) 322, 722
Acc36I ACCTGC 1 cut(s) 947
Acc65I GGTACC 2 cut(s) 302, 542
AccB1I GGYRCC 3 cut(s) 302, 362, 542
AccB7I CCANNNNNTGG 1 cut(s) 697
AccII CGCG 5 cut(s) 191, 216, 257, 390, 587
AclWI GGATC 2 cut(s) 91, 831
AcoI YGGCCR 2 cut(s) 220, 483
AcsI RAATTY 2 cut(s) 498, 1010
AcuI CTGAAG 1 cut(s) 905
AcyI GRCGYC 3 cut(s) 5, 363, 384
AfaI GTAC 4 cut(s) 304, 544, 875, 890
AfiI CCNNNNNNNGG 5 cut(s) 124, 359, 509, 697, 977
AflIII ACRYGT 2 cut(s) 736, 885
AgsI TTSAA 4 cut(s) 211, 245, 537, 649
AjiI CACGTC 1 cut(s) 739
AjnI CCWGG 3 cut(s) 477, 758, 807
AluBI AGCT 1 cut(s) 953
AluI AGCT 1 cut(s) 953
Alw21I GWGCWC 1 cut(s) 868
Alw26I GTCTC 2 cut(s) 151, 180
AlwI GGATC 2 cut(s) 91, 831
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 4 cut(s) 220, 483, 756, 916
ApeKI GCWGC 3 cut(s) 853, 950, 953
ApoI RAATTY 2 cut(s) 498, 1010
Asp718I GGTACC 2 cut(s) 302, 542
AspLEI GCGC 7 cut(s) 193, 216, 218, 259, 365, 587, 796
AspS9I GGNCC 3 cut(s) 594, 715, 762
AsuC2I CCSGG 4 cut(s) 328, 510, 547, 555
AsuHPI GGTGA 9 cut(s) 10, 172, 337, 385, 772, 784, 811, 960, 971
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 3 cut(s) 594, 715, 762
BanI GGYRCC 3 cut(s) 302, 362, 542
BbsI GAAGAC 1 cut(s) 957
Bbv12I GWGCWC 1 cut(s) 868
BbvI GCAGC 3 cut(s) 840, 940, 962
BccI CCATC 3 cut(s) 191, 607, 830
BceAI ACGGC 8 cut(s) 157, 340, 397, 439, 807, 829, 910, 931
BciT130I CCWGG 3 cut(s) 479, 760, 809
BciVI GTATCC 1 cut(s) 596
BcnI CCSGG 4 cut(s) 328, 510, 547, 555
BcoDI GTCTC 2 cut(s) 151, 180
BfmI CTRYAG 1 cut(s) 954
BfoI RGCGCY 2 cut(s) 366, 797
BfuAI ACCTGC 1 cut(s) 947
BfuI GTATCC 1 cut(s) 596
BisI GCNGC 9 cut(s) 90, 194, 353, 402, 483, 486, 854, 951, 954
BlsI GCNGC 9 cut(s) 91, 195, 354, 403, 484, 487, 855, 952, 955
Bme1390I CCNGG 7 cut(s) 328, 479, 510, 547, 555, 760, 809
Bme18I GGWCC 3 cut(s) 594, 715, 762
BmeT110I CYCGRG 1 cut(s) 137
BmgBI CACGTC 1 cut(s) 739
BmgT120I GGNCC 3 cut(s) 594, 715, 762
BmiI GGNNCC 6 cut(s) 304, 364, 544, 569, 577, 717
BmrFI CCNGG 7 cut(s) 328, 479, 510, 547, 555, 760, 809
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 1 cut(s) 927
BmuI ACTGGG 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 957
BplI GAGNNNNNCTC 2 cut(s) 131, 163
BpmI CTGGAG 2 cut(s) 305, 817
BpuMI CCSGG 4 cut(s) 328, 510, 547, 555
BsaHI GRCGYC 3 cut(s) 5, 363, 384
BsaJI CCNNGG 5 cut(s) 123, 439, 554, 571, 720
BsaWI WCCGGW 2 cut(s) 868, 970
Bsc4I CCNNNNNNNGG 5 cut(s) 124, 359, 509, 697, 977
Bse118I RCCGGY 2 cut(s) 218, 299
Bse1I ACTGG 3 cut(s) 151, 322, 999
BseBI CCWGG 3 cut(s) 479, 760, 809
BseDI CCNNGG 5 cut(s) 123, 439, 554, 571, 720
BseGI GGATG 2 cut(s) 435, 1003
BseLI CCNNNNNNNGG 5 cut(s) 124, 359, 509, 697, 977
BseNI ACTGG 3 cut(s) 151, 322, 999
BsePI GCGCGC 1 cut(s) 214
BseRI GAGGAG 6 cut(s) 23, 26, 29, 32, 35, 46
BseX3I CGGCCG 1 cut(s) 483
BseXI GCAGC 3 cut(s) 840, 940, 962
Bsh1236I CGCG 5 cut(s) 191, 216, 257, 390, 587
Bsh1285I CGRYCG 1 cut(s) 486
BshFI GGCC 4 cut(s) 222, 485, 758, 918
BshNI GGYRCC 3 cut(s) 302, 362, 542
BsiEI CGRYCG 1 cut(s) 486
BsiHKAI GWGCWC 1 cut(s) 868
BsiHKCI CYCGRG 1 cut(s) 137
BslFI GGGAC 3 cut(s) 139, 146, 802
BslI CCNNNNNNNGG 5 cut(s) 124, 359, 509, 697, 977
BsmAI GTCTC 2 cut(s) 151, 180
BsmBI CGTCTC 2 cut(s) 151, 180
BsmFI GGGAC 3 cut(s) 139, 146, 802
BsnI GGCC 4 cut(s) 222, 485, 758, 918
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 868
Bsp143I GATC 6 cut(s) 15, 96, 411, 628, 766, 836
Bsp19I CCATGG 1 cut(s) 123
BspANI GGCC 4 cut(s) 222, 485, 758, 918
BspFNI CGCG 5 cut(s) 191, 216, 257, 390, 587
BspLI GGNNCC 6 cut(s) 304, 364, 544, 569, 577, 717
BspMAI CTGCAG 1 cut(s) 958
BspMI ACCTGC 1 cut(s) 947
BspPI GGATC 2 cut(s) 91, 831
BspT107I GGYRCC 3 cut(s) 302, 362, 542
BsrFI RCCGGY 2 cut(s) 218, 299
BsrI ACTGG 3 cut(s) 151, 322, 999
BssAI RCCGGY 2 cut(s) 218, 299
BssECI CCNNGG 5 cut(s) 123, 439, 554, 571, 720
BssHII GCGCGC 1 cut(s) 214
BssMI GATC 6 cut(s) 15, 96, 411, 628, 766, 836
BssNI GRCGYC 3 cut(s) 5, 363, 384
BssT1I CCWWGG 2 cut(s) 123, 571
Bst2UI CCWGG 3 cut(s) 479, 760, 809
Bst4CI ACNGT 5 cut(s) 22, 542, 610, 673, 863
Bst6I CTCTTC 1 cut(s) 939
BstACI GRCGYC 3 cut(s) 5, 363, 384
BstC8I GCNNGC 3 cut(s) 216, 220, 224
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 2 cut(s) 435, 1003
BstFNI CGCG 5 cut(s) 191, 216, 257, 390, 587
BstH2I RGCGCY 2 cut(s) 366, 797
BstHHI GCGC 7 cut(s) 193, 216, 218, 259, 365, 587, 796
BstKTI GATC 6 cut(s) 18, 99, 414, 631, 769, 839
BstMAI GTCTC 2 cut(s) 151, 180
BstMBI GATC 6 cut(s) 15, 96, 411, 628, 766, 836
BstMCI CGRYCG 1 cut(s) 486
BstMWI GCNNNNNNNGC 3 cut(s) 263, 584, 631
BstNI CCWGG 3 cut(s) 479, 760, 809
BstNSI RCATGY 1 cut(s) 889
BstSCI CCNGG 7 cut(s) 326, 477, 508, 545, 553, 758, 807
BstSFI CTRYAG 1 cut(s) 954
BstUI CGCG 5 cut(s) 191, 216, 257, 390, 587
BstV1I GCAGC 3 cut(s) 840, 940, 962
BstV2I GAAGAC 1 cut(s) 957
BstX2I RGATCY 2 cut(s) 96, 836
BstYI RGATCY 2 cut(s) 96, 836
BstZI CGGCCG 1 cut(s) 483
BsuI GTATCC 1 cut(s) 596
BsuRI GGCC 4 cut(s) 222, 485, 758, 918
BtgI CCRYGG 1 cut(s) 123
BtgZI GCGATG 1 cut(s) 602
BtrI CACGTC 1 cut(s) 739
BtsCI GGATG 2 cut(s) 435, 1003
BtsIMutI CAGTG 1 cut(s) 992
BveI ACCTGC 1 cut(s) 947
Cac8I GCNNGC 3 cut(s) 216, 220, 224
CciNI GCGGCCGC 1 cut(s) 483
CfoI GCGC 7 cut(s) 193, 216, 218, 259, 365, 587, 796
Cfr10I RCCGGY 2 cut(s) 218, 299
Cfr13I GGNCC 3 cut(s) 594, 715, 762
CseI GACGC 4 cut(s) 67, 325, 373, 379
Csp6I GTAC 4 cut(s) 303, 543, 874, 889
CviAII CATG 3 cut(s) 124, 640, 886
CviQI GTAC 4 cut(s) 303, 543, 874, 889
DinI GGCGCC 1 cut(s) 364
DpnI GATC 6 cut(s) 17, 98, 413, 630, 768, 838
DpnII GATC 6 cut(s) 15, 96, 411, 628, 766, 836
DrdI GACNNNNNNGTC 2 cut(s) 322, 722
DseDI GACNNNNNNGTC 2 cut(s) 322, 722
EaeI YGGCCR 2 cut(s) 220, 483
EagI CGGCCG 1 cut(s) 483
Eam1104I CTCTTC 1 cut(s) 939
EarI CTCTTC 1 cut(s) 939
EciI GGCGGA 2 cut(s) 49, 193
EclXI CGGCCG 1 cut(s) 483
Eco130I CCWWGG 2 cut(s) 123, 571
Eco47I GGWCC 3 cut(s) 594, 715, 762
Eco52I CGGCCG 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 905
Eco88I CYCGRG 1 cut(s) 137
EcoRI GAATTC 2 cut(s) 498, 1010
EcoRII CCWGG 3 cut(s) 477, 758, 807
EcoT14I CCWWGG 2 cut(s) 123, 571
EgeI GGCGCC 1 cut(s) 364
EheI GGCGCC 1 cut(s) 364
ErhI CCWWGG 2 cut(s) 123, 571
Esp3I CGTCTC 2 cut(s) 151, 180
FaeI CATG 3 cut(s) 127, 643, 889
FaiI YATR 3 cut(s) 125, 641, 887
FaqI GGGAC 3 cut(s) 139, 146, 802
FatI CATG 3 cut(s) 123, 639, 885
FauI CCCGC 3 cut(s) 304, 498, 515
Fnu4HI GCNGC 9 cut(s) 90, 194, 353, 402, 483, 486, 854, 951, 954
FokI GGATG 2 cut(s) 422, 1010
Fsp4HI GCNGC 9 cut(s) 90, 194, 353, 402, 483, 486, 854, 951, 954
GlaI GCGC 7 cut(s) 192, 215, 217, 258, 364, 586, 795
GluI GCNGC 9 cut(s) 90, 194, 353, 402, 483, 486, 854, 951, 954
GsuI CTGGAG 2 cut(s) 305, 817
HaeII RGCGCY 2 cut(s) 366, 797
HaeIII GGCC 4 cut(s) 222, 485, 758, 918
HgaI GACGC 4 cut(s) 67, 325, 373, 379
HhaI GCGC 7 cut(s) 193, 216, 218, 259, 365, 587, 796
Hin1I GRCGYC 3 cut(s) 5, 363, 384
Hin1II CATG 3 cut(s) 127, 643, 889
Hin6I GCGC 7 cut(s) 191, 214, 216, 257, 363, 585, 794
HinP1I GCGC 7 cut(s) 191, 214, 216, 257, 363, 585, 794
HincII GTYRAC 2 cut(s) 669, 688
HindII GTYRAC 2 cut(s) 669, 688
HphI GGTGA 9 cut(s) 10, 172, 337, 385, 772, 784, 811, 960, 971
Hpy166II GTNNAC 4 cut(s) 669, 688, 874, 913
Hpy188I TCNGA 7 cut(s) 443, 516, 529, 660, 766, 827, 1016
Hpy188III TCNNGA 5 cut(s) 137, 313, 649, 834, 923
Hpy8I GTNNAC 4 cut(s) 669, 688, 874, 913
Hpy99I CGWCG 9 cut(s) 10, 16, 319, 344, 422, 425, 743, 848, 908
HpyAV CCTTC 5 cut(s) 217, 251, 779, 929, 971
HpyCH4III ACNGT 5 cut(s) 22, 542, 610, 673, 863
HpyCH4IV ACGT 2 cut(s) 738, 846
HpyCH4V TGCA 2 cut(s) 634, 956
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 584, 631
HpySE526I ACGT 2 cut(s) 738, 846
Hsp92I GRCGYC 3 cut(s) 5, 363, 384
Hsp92II CATG 3 cut(s) 127, 643, 889
HspAI GCGC 7 cut(s) 191, 214, 216, 257, 363, 585, 794
KasI GGCGCC 1 cut(s) 362
KpnI GGTACC 2 cut(s) 306, 546
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
Kzo9I GATC 6 cut(s) 15, 96, 411, 628, 766, 836
LmnI GCTCC 5 cut(s) 324, 511, 575, 685, 871
Lsp1109I GCAGC 3 cut(s) 840, 940, 962
LweI GCATC 1 cut(s) 927
MaeII ACGT 2 cut(s) 738, 846
MaeIII GTNAC 3 cut(s) 343, 391, 986
MalI GATC 6 cut(s) 17, 98, 413, 630, 768, 838
MboI GATC 6 cut(s) 15, 96, 411, 628, 766, 836
MboII GAAGA 6 cut(s) 178, 448, 525, 956, 957, 986
MflI RGATCY 2 cut(s) 96, 836
MhlI GDGCHC 1 cut(s) 868
MluCI AATT 2 cut(s) 498, 1010
Mly113I GGCGCC 1 cut(s) 363
MlyI GAGTC 4 cut(s) 194, 453, 971, 983
MmeI TCCRAC 3 cut(s) 507, 621, 683
MroNI GCCGGC 1 cut(s) 218
MslI CAYNNNNRTG 1 cut(s) 611
MspA1I CMGCKG 1 cut(s) 953
MspR9I CCNGG 7 cut(s) 328, 479, 510, 547, 555, 760, 809
MvaI CCWGG 3 cut(s) 479, 760, 809
MvnI CGCG 5 cut(s) 191, 216, 257, 390, 587
MwoI GCNNNNNNNGC 3 cut(s) 263, 584, 631
NaeI GCCGGC 1 cut(s) 220
NarI GGCGCC 1 cut(s) 363
NciI CCSGG 4 cut(s) 328, 510, 547, 555
NcoI CCATGG 1 cut(s) 123
NdeII GATC 6 cut(s) 15, 96, 411, 628, 766, 836
NgoMIV GCCGGC 1 cut(s) 218
NlaIII CATG 3 cut(s) 127, 643, 889
NlaIV GGNNCC 6 cut(s) 304, 364, 544, 569, 577, 717
NmeAIII GCCGAG 1 cut(s) 118
NmuCI GTSAC 3 cut(s) 343, 391, 986
NotI GCGGCCGC 1 cut(s) 483
NspI RCATGY 1 cut(s) 889
PaeR7I CTCGAG 1 cut(s) 137
PaqCI CACCTGC 1 cut(s) 947
PauI GCGCGC 1 cut(s) 214
PciI ACATGT 1 cut(s) 885
PcsI WCGNNNNNNNCGW 3 cut(s) 387, 606, 900
PdiI GCCGGC 1 cut(s) 220
PfeI GAWTC 6 cut(s) 107, 530, 703, 775, 828, 899
PflMI CCANNNNNTGG 1 cut(s) 697
PfoI TCCNGGA 1 cut(s) 326
PkrI GCNGC 9 cut(s) 91, 195, 354, 403, 484, 487, 855, 952, 955
PleI GAGTC 4 cut(s) 194, 452, 970, 983
PluTI GGCGCC 1 cut(s) 366
PpsI GAGTC 4 cut(s) 194, 452, 970, 983
PscI ACATGT 1 cut(s) 885
Psp6I CCWGG 3 cut(s) 477, 758, 807
PspGI CCWGG 3 cut(s) 477, 758, 807
PspN4I GGNNCC 6 cut(s) 304, 364, 544, 569, 577, 717
PspPI GGNCC 3 cut(s) 594, 715, 762
PstI CTGCAG 1 cut(s) 958
PsuI RGATCY 2 cut(s) 96, 836
PteI GCGCGC 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 953
RsaI GTAC 4 cut(s) 304, 544, 875, 890
RsaNI GTAC 4 cut(s) 303, 543, 874, 889
RseI CAYNNNNRTG 1 cut(s) 611
SatI GCNGC 9 cut(s) 90, 194, 353, 402, 483, 486, 854, 951, 954
Sau3AI GATC 6 cut(s) 15, 96, 411, 628, 766, 836
Sau96I GGNCC 3 cut(s) 594, 715, 762
SchI GAGTC 4 cut(s) 194, 453, 971, 983
ScrFI CCNGG 7 cut(s) 328, 479, 510, 547, 555, 760, 809
SduI GDGCHC 1 cut(s) 868
SfaNI GCATC 1 cut(s) 927
SfcI CTRYAG 1 cut(s) 954
SfoI GGCGCC 1 cut(s) 364
Sfr274I CTCGAG 1 cut(s) 137
SinI GGWCC 3 cut(s) 594, 715, 762
SlaI CTCGAG 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 2 cut(s) 498, 1010
SspDI GGCGCC 1 cut(s) 362
StyD4I CCNGG 7 cut(s) 326, 477, 508, 545, 553, 758, 807
StyI CCWWGG 2 cut(s) 123, 571
TaaI ACNGT 5 cut(s) 22, 542, 610, 673, 863
TaiI ACGT 2 cut(s) 741, 849
TaqI TCGA 4 cut(s) 14, 138, 447, 459
TaqII GACCGA 1 cut(s) 712
TasI AATT 2 cut(s) 498, 1010
TatI WGTACW 2 cut(s) 873, 888
TauI GCSGC 6 cut(s) 92, 196, 355, 404, 485, 488
TfiI GAWTC 6 cut(s) 107, 530, 703, 775, 828, 899
TscAI CASTG 1 cut(s) 999
TseFI GTSAC 3 cut(s) 343, 391, 986
TseI GCWGC 3 cut(s) 853, 950, 953
Tsp45I GTSAC 3 cut(s) 343, 391, 986
TspGWI ACGGA 2 cut(s) 615, 892
TspRI CASTG 1 cut(s) 999
Van91I CCANNNNNTGG 1 cut(s) 697
VpaK11BI GGWCC 3 cut(s) 594, 715, 762
XapI RAATTY 2 cut(s) 498, 1010
XceI RCATGY 1 cut(s) 889
XhoI CTCGAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.